View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5316_low_3 (Length: 584)
Name: NF5316_low_3
Description: NF5316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5316_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 50 - 567
Target Start/End: Original strand, 5901475 - 5901993
Alignment:
| Q |
50 |
tacatagataccttttttcatactcaataactatagacacctaaatattgtatagacaacagtttacactatctatagataaattatgtacagagctgat |
149 |
Q |
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||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5901475 |
tacatagatcccttttttcatacgcaataactatagacacctaaatattgtatagacaacagtttacactatctatagataaattatgtacagagctgat |
5901574 |
T |
|
| Q |
150 |
ctat-atctgctcnnnnnnnnnnnnnnnnngctgatctgttatacgaacccatatgtaaactacacattttatagtcagaactgaaaagaaattgatcta |
248 |
Q |
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|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
5901575 |
ctattatctgctcaaaaaataaaaaataaagctgatctgttatacgaacccatatgtaaactacacattttatagtcagaactgaaaagaaattgttcta |
5901674 |
T |
|
| Q |
249 |
tatgcccttcatatttgctcaatagctcttcaataaaccggaatgtatcttttgatgacacgaacatatcataagatatgttttgatcgacnnnnnnnca |
348 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
5901675 |
tatgcccttcatatttgctcaatagctcttcaataaaccggaatgtatcttttgatgacacgaacatatcataagatatgttttgatcgactttttttca |
5901774 |
T |
|
| Q |
349 |
tcggaagctattttttggtcggcattttttcactgtattaatgacctgggcctttttcactgggccctgaagtcatagtatggacttggccaccaatcaa |
448 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5901775 |
tcggaagctatttttcggtcggcattttttcactgtattaatgacctgggcctttttcactgggccctgaagtcatagtatggacttggccaccaatcaa |
5901874 |
T |
|
| Q |
449 |
aaccctgaaaacattgttggccttctctttcatgatctttagctctttgataggttcatcaataacctttaattttaactcattgataggttcatcaatg |
548 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |
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| T |
5901875 |
aaccctgaaaacattgttggccttctctttcatgatctttagctctttgataggttcatcaataacctttaactttagttcattgataggttcatcaatg |
5901974 |
T |
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| Q |
549 |
gcctttacttgggagggat |
567 |
Q |
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||||||||||||||||||| |
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| T |
5901975 |
gcctttacttgggagggat |
5901993 |
T |
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