View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5316_low_31 (Length: 256)

Name: NF5316_low_31
Description: NF5316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5316_low_31
NF5316_low_31
[»] chr3 (7 HSPs)
chr3 (18-255)||(44783554-44783791)
chr3 (118-245)||(44788285-44788412)
chr3 (118-242)||(44786607-44786731)
chr3 (125-248)||(44799934-44800057)
chr3 (115-241)||(44791970-44792096)
chr3 (125-246)||(44803783-44803904)
chr3 (157-246)||(44796907-44796996)


Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 18 - 255
Target Start/End: Original strand, 44783554 - 44783791
Alignment:
Q  18 aggtcttgtatcagaaaattatattacatggaagtggaaatattattgagaaaaaccaaaagcacataaattatagatcatatcctattatctcatctgg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44783554 aggtcttgtatcagaaaattatattacatggaagtggaaatattattgagaaaaaccaaaagcacataaattatagatcatatcctattatctcatctgg 44783653  T
Q  118 tctcagtttcacattttactagtaatggaaagatatgtggtatgacgtccatgagcaaaaacttggccagtctttttcttcctaaactccatgcttgcaa 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  44783654 tctcagtttcacattttactagtaatggaaagatatgtggtatgacgtccatgagcaaaaacttggccagtctttttcttcctaaactccatgcttacaa 44783753  T
Q  218 cagctataacctttcctactcgtagaacctttgcttct 255  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  44783754 cagctataacctttcctactcgtagaacccttgcttct 44783791  T

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Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 118 - 245
Target Start/End: Original strand, 44788285 - 44788412
Alignment:
Q  118 tctcagtttcacattttactagtaatggaaagatatgtggtatgacgtccatgagcaaaaacttggccagtctttttcttcctaaactccatgcttgcaa 217  Q
    |||||||||||||||||| |  ||| ||||| |||| ||||||||||||| |||||||||| ||||||||||||||||||||| ||||||| |||| |||    
T  44788285 tctcagtttcacattttagtgataaaggaaatatatttggtatgacgtccctgagcaaaaatttggccagtctttttcttcctgaactccacgcttacaa 44788384  T
Q  218 cagctataacctttcctactcgtagaac 245  Q
    |||| ||| |||| ||| ||||||||||    
T  44788385 cagccatacccttccctgctcgtagaac 44788412  T

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Target: chr3; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 118 - 242
Target Start/End: Original strand, 44786607 - 44786731
Alignment:
Q  118 tctcagtttcacattttactagtaatggaaagatatgtggtatgacgtccatgagcaaaaacttggccagtctttttcttcctaaactccatgcttgcaa 217  Q
    ||||||||||||||||||||  ||| ||  | |||| |||||||||| || |||||||||| ||||||||| ||||||||||| ||||||| ||||  ||    
T  44786607 tctcagtttcacattttactgataaagggtatatatttggtatgacgcccctgagcaaaaatttggccagtttttttcttccttaactccacgcttataa 44786706  T
Q  218 cagctataacctttcctactcgtag 242  Q
    ||||||||  |||||||||||||||    
T  44786707 cagctatagtctttcctactcgtag 44786731  T

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Target: chr3; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 125 - 248
Target Start/End: Original strand, 44799934 - 44800057
Alignment:
Q  125 ttcacattttactagtaatggaaagatatgtggtatgacgtccatgagcaaaaacttggccagtctttttcttcctaaactccatgcttgcaacagctat 224  Q
    |||||||||||||   || || ||||||  |||||||||| || |||||||||| |||||| |||||||||||||| ||||| | |||| ||||||||||    
T  44799934 ttcacattttactgacaaagggaagatacttggtatgacgcccttgagcaaaaatttggcccgtctttttcttcctgaactctacgcttacaacagctat 44800033  T
Q  225 aacctttcctactcgtagaacctt 248  Q
    | | ||||||||||||||||||||    
T  44800034 agcatttcctactcgtagaacctt 44800057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 115 - 241
Target Start/End: Original strand, 44791970 - 44792096
Alignment:
Q  115 tggtctcagtttcacattttactagtaatggaaagatatgtggtatgacgtccatgagcaaaaacttggccagtctttttcttcctaaactccatgcttg 214  Q
    ||||||| |||||||||||||||   || || || |||| |||||||||| || |||||||||||||| ||||||||||||||| | ||||||| ||||     
T  44791970 tggtctcggtttcacattttacttacaaagggaatatatttggtatgacgcccttgagcaaaaacttgtccagtctttttcttcttgaactccacgctta 44792069  T
Q  215 caacagctataacctttcctactcgta 241  Q
    ||||||||| | ||||||||| |||||    
T  44792070 caacagctacagcctttcctattcgta 44792096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 125 - 246
Target Start/End: Original strand, 44803783 - 44803904
Alignment:
Q  125 ttcacattttactagtaatggaaagatatgtggtatgacgtccatgagcaaaaacttggccagtctttttcttcctaaactccatgcttgcaacagctat 224  Q
    |||||||||||||  ||| || ||||||| | ||| |||| || ||||||||||||||| | |||||||||||||| ||||||| |||| |||||||||     
T  44803783 ttcacattttactcctaaagggaagatattttgtaagacgcccttgagcaaaaacttggtccgtctttttcttcctcaactccacgcttacaacagctac 44803882  T
Q  225 aacctttcctactcgtagaacc 246  Q
      ||||||||||||||||||||    
T  44803883 ggcctttcctactcgtagaacc 44803904  T

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Target: chr3; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 157 - 246
Target Start/End: Original strand, 44796907 - 44796996
Alignment:
Q  157 gtatgacgtccatgagcaaaaacttggccagtctttttcttcctaaactccatgcttgcaacagctataacctttcctactcgtagaacc 246  Q
    |||||||| || |||||||||||||||||||| ||||||||||| ||||||| ||||  |||||||| | ||||||||| || |||||||    
T  44796907 gtatgacgcccttgagcaaaaacttggccagtttttttcttcctcaactccacgcttagaacagctacagcctttcctagtcttagaacc 44796996  T

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