View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5316_low_33 (Length: 251)

Name: NF5316_low_33

Description: NF5316

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF5316_low_33

[»] chr7 (2 HSPs)

Target: chr7 (Bit Score: 151; Significance: 5e-80; HSPs: 2)

Name: chr7

Description:

Target: chr7; HSP #1

Raw Score: 151; E-Value: 5e-80

Query Start/End: Original strand, 26 - 188

Target Start/End: Complemental strand, 45757069 - 45756907

Alignment:

Q	26	aaaaagcacgttacttgtagtagatacgaaagatctagaagaaaaaagaataagagtaataataagttaataatgatcgcaaaatgcgaatatctaataa	125	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	45757069	aaaaagcacgttacttgtagtagatacgaaagatctagaagaaaaaagaataagagtaataataagttaataatggtggcaaaatgcgaatatctaataa	45756970	T

Q	126	ggtgaaatcttcatgtgagaagaaccaaacattattgacaaaagtaccatcgaaaagaatatt	188	Q
		\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	45756969	ggtgaaatcttaatgtgagaagaaccaaacattattgacaaaagtaccatcgaaaagaatatt	45756907	T

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Target: chr7; HSP #2

Raw Score: 58; E-Value: 2e-24

Query Start/End: Original strand, 184 - 241

Target Start/End: Complemental strand, 45756869 - 45756812

Alignment:

Q	184	atattcatagcaaatgttttcccaaaatttaagtttgttagtaccattttgtcctttg	241	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	45756869	atattcatagcaaatgttttcccaaaatttaagtttgttagtaccattttgtcctttg	45756812	T

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