View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5316_low_4 (Length: 544)

Name: NF5316_low_4
Description: NF5316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5316_low_4
NF5316_low_4
[»] chr4 (42 HSPs)
chr4 (8-534)||(42312848-42313374)
chr4 (53-108)||(7806582-7806637)
chr4 (9-108)||(33629678-33629777)
chr4 (32-105)||(23018512-23018585)
chr4 (9-105)||(33629940-33630035)
chr4 (32-108)||(45427238-45427314)
chr4 (32-105)||(29669352-29669425)
chr4 (32-105)||(52214657-52214730)
chr4 (32-105)||(53740224-53740297)
chr4 (32-108)||(990589-990665)
chr4 (32-108)||(12016877-12016953)
chr4 (32-108)||(27048394-27048470)
chr4 (2-106)||(43943685-43943789)
chr4 (32-108)||(51469523-51469599)
chr4 (32-108)||(53739908-53739984)
chr4 (32-107)||(5488409-5488484)
chr4 (2-105)||(17076929-17077032)
chr4 (69-108)||(20545898-20545937)
chr4 (30-105)||(27048126-27048201)
chr4 (53-108)||(27634517-27634572)
chr4 (66-105)||(35645219-35645258)
chr4 (66-105)||(35645508-35645547)
chr4 (32-106)||(12016671-12016745)
chr4 (2-108)||(17077130-17077236)
chr4 (32-106)||(25753593-25753667)
chr4 (53-99)||(27634091-27634137)
chr4 (62-108)||(27634312-27634358)
chr4 (30-100)||(43972395-43972465)
chr4 (32-106)||(51470525-51470599)
chr4 (32-97)||(21497680-21497745)
chr4 (32-97)||(21498229-21498294)
chr4 (36-105)||(28395223-28395292)
chr4 (32-105)||(29113491-29113564)
chr4 (3-96)||(49380878-49380971)
chr4 (53-105)||(17222656-17222708)
chr4 (32-108)||(28245830-28245906)
chr4 (32-108)||(29669664-29669740)
chr4 (53-105)||(36558455-36558507)
chr4 (32-100)||(45426930-45426998)
chr4 (53-105)||(50858075-50858127)
chr4 (62-106)||(50858397-50858441)
chr4 (62-106)||(51470716-51470760)
[»] chr1 (28 HSPs)
chr1 (140-390)||(47977596-47977846)
chr1 (53-106)||(49895216-49895269)
chr1 (2-105)||(1233938-1234041)
chr1 (55-105)||(24382140-24382190)
chr1 (32-96)||(11590629-11590693)
chr1 (32-108)||(24382346-24382422)
chr1 (32-91)||(11590462-11590521)
chr1 (2-100)||(15392037-15392135)
chr1 (34-108)||(20735566-20735640)
chr1 (54-108)||(24382554-24382608)
chr1 (36-105)||(15392150-15392219)
chr1 (55-100)||(17412597-17412642)
chr1 (32-105)||(43423321-43423394)
chr1 (32-100)||(22892427-22892495)
chr1 (32-108)||(29273211-29273287)
chr1 (53-105)||(34076665-34076717)
chr1 (2-106)||(39649072-39649176)
chr1 (54-105)||(2997045-2997096)
chr1 (53-108)||(2997247-2997302)
chr1 (53-108)||(24382762-24382817)
chr1 (53-108)||(29273052-29273107)
chr1 (62-108)||(9380972-9381018)
chr1 (32-106)||(17419829-17419903)
chr1 (62-108)||(19481378-19481424)
chr1 (62-108)||(46098549-46098595)
chr1 (32-105)||(4022114-4022187)
chr1 (32-105)||(31305753-31305826)
chr1 (60-100)||(22892682-22892722)
[»] chr3 (35 HSPs)
chr3 (140-390)||(51565006-51565256)
chr3 (3-105)||(42604921-42605023)
chr3 (32-108)||(44573681-44573757)
chr3 (32-108)||(50692365-50692441)
chr3 (30-105)||(21832188-21832263)
chr3 (1-108)||(40230625-40230732)
chr3 (2-108)||(9264486-9264592)
chr3 (2-108)||(51642621-51642727)
chr3 (32-105)||(44573978-44574051)
chr3 (32-105)||(50692568-50692641)
chr3 (2-106)||(9264074-9264178)
chr3 (36-108)||(9264279-9264351)
chr3 (36-108)||(22407634-22407706)
chr3 (32-108)||(39078757-39078833)
chr3 (32-108)||(39956660-39956736)
chr3 (1-105)||(40230424-40230527)
chr3 (53-108)||(4255573-4255628)
chr3 (33-108)||(50057072-50057147)
chr3 (62-108)||(4255991-4256037)
chr3 (53-107)||(24539217-24539271)
chr3 (30-96)||(49477367-49477433)
chr3 (2-96)||(49477546-49477640)
chr3 (32-101)||(13769284-13769353)
chr3 (32-105)||(21750517-21750590)
chr3 (36-105)||(22407430-22407499)
chr3 (32-105)||(34715444-34715517)
chr3 (36-105)||(42258956-42259025)
chr3 (36-105)||(51642417-51642486)
chr3 (32-100)||(31563997-31564065)
chr3 (32-96)||(34992619-34992683)
chr3 (32-108)||(38300738-38300814)
chr3 (62-106)||(48685300-48685344)
chr3 (68-108)||(50057237-50057277)
chr3 (68-108)||(50057367-50057407)
chr3 (53-105)||(51338392-51338444)
[»] chr6 (20 HSPs)
chr6 (220-362)||(34028832-34028974)
chr6 (1-108)||(11316854-11316961)
chr6 (2-108)||(30526850-30526956)
chr6 (32-108)||(16876996-16877072)
chr6 (32-105)||(1744831-1744904)
chr6 (32-105)||(16876819-16876892)
chr6 (32-105)||(28149835-28149908)
chr6 (32-100)||(8144059-8144127)
chr6 (32-108)||(17147891-17147967)
chr6 (1-105)||(19712393-19712497)
chr6 (36-100)||(24558629-24558693)
chr6 (32-99)||(10418333-10418400)
chr6 (11-105)||(15102613-15102708)
chr6 (2-108)||(11313368-11313474)
chr6 (32-106)||(15101099-15101173)
chr6 (3-105)||(24558801-24558903)
chr6 (32-105)||(24055098-24055171)
chr6 (32-100)||(10733432-10733500)
chr6 (32-108)||(19712595-19712671)
chr6 (32-100)||(27914320-27914388)
[»] chr7 (21 HSPs)
chr7 (8-108)||(258447-258547)
chr7 (2-105)||(6813067-6813170)
chr7 (8-94)||(6751505-6751591)
chr7 (2-96)||(6751707-6751801)
chr7 (10-108)||(13310411-13310509)
chr7 (53-107)||(40792799-40792853)
chr7 (32-108)||(6813269-6813345)
chr7 (32-96)||(29252618-29252682)
chr7 (32-100)||(40703405-40703473)
chr7 (3-105)||(6783051-6783153)
chr7 (2-108)||(23396621-23396727)
chr7 (32-105)||(7135232-7135305)
chr7 (2-105)||(5775894-5775997)
chr7 (32-98)||(39808460-39808526)
chr7 (32-98)||(39808593-39808659)
chr7 (32-105)||(1661180-1661253)
chr7 (53-106)||(1663592-1663645)
chr7 (32-105)||(28910074-28910147)
chr7 (32-100)||(257261-257329)
chr7 (53-105)||(41670896-41670948)
chr7 (32-100)||(43288574-43288642)
[»] chr5 (25 HSPs)
chr5 (32-108)||(13843739-13843815)
chr5 (32-102)||(37995626-37995696)
chr5 (32-108)||(2908755-2908831)
chr5 (32-108)||(13413626-13413702)
chr5 (53-108)||(20720536-20720591)
chr5 (30-108)||(48297-48375)
chr5 (2-108)||(3762918-3763024)
chr5 (60-106)||(18107697-18107743)
chr5 (32-106)||(38131806-38131880)
chr5 (32-105)||(1028082-1028155)
chr5 (32-89)||(15510509-15510566)
chr5 (2-99)||(35526983-35527080)
chr5 (32-108)||(34457138-34457214)
chr5 (32-107)||(28156072-28156147)
chr5 (53-100)||(43490210-43490257)
chr5 (32-106)||(12965234-12965308)
chr5 (53-103)||(30758305-30758355)
chr5 (2-108)||(38376743-38376849)
chr5 (62-108)||(40169027-40169073)
chr5 (32-105)||(873685-873758)
chr5 (32-105)||(24994111-24994184)
chr5 (2-106)||(3015405-3015509)
chr5 (32-100)||(24918203-24918271)
chr5 (32-100)||(28358029-28358097)
chr5 (32-100)||(38663289-38663357)
[»] chr8 (23 HSPs)
chr8 (2-108)||(43599323-43599429)
chr8 (32-108)||(3183897-3183973)
chr8 (32-108)||(10989227-10989303)
chr8 (29-100)||(5496600-5496671)
chr8 (32-106)||(10989022-10989096)
chr8 (32-106)||(18905898-18905972)
chr8 (2-100)||(36037202-36037300)
chr8 (32-106)||(36997208-36997282)
chr8 (32-105)||(20298505-20298578)
chr8 (32-105)||(21085137-21085210)
chr8 (2-107)||(30176451-30176556)
chr8 (32-105)||(32931443-32931516)
chr8 (32-108)||(15011015-15011091)
chr8 (32-100)||(34248401-34248469)
chr8 (32-108)||(43984302-43984378)
chr8 (3-106)||(16454623-16454726)
chr8 (32-99)||(34248119-34248186)
chr8 (2-108)||(8559593-8559699)
chr8 (30-99)||(21653844-21653913)
chr8 (32-105)||(40902382-40902455)
chr8 (60-100)||(7729741-7729781)
chr8 (34-106)||(15010809-15010881)
chr8 (32-96)||(42228813-42228877)
[»] scaffold0434 (2 HSPs)
scaffold0434 (32-108)||(13348-13424)
scaffold0434 (32-105)||(13555-13628)
[»] chr2 (21 HSPs)
chr2 (32-108)||(21214187-21214263)
chr2 (53-108)||(93448-93503)
chr2 (53-108)||(93721-93776)
chr2 (2-103)||(17727416-17727517)
chr2 (32-105)||(42768323-42768396)
chr2 (32-105)||(43195826-43195899)
chr2 (32-108)||(3976457-3976533)
chr2 (2-105)||(883590-883693)
chr2 (53-108)||(883913-883968)
chr2 (53-96)||(6148920-6148963)
chr2 (53-108)||(37812499-37812554)
chr2 (2-108)||(12431910-12432016)
chr2 (32-105)||(20998978-20999051)
chr2 (32-105)||(23054368-23054441)
chr2 (32-105)||(31761373-31761446)
chr2 (36-105)||(33985760-33985829)
chr2 (32-108)||(3976989-3977065)
chr2 (32-100)||(11969094-11969162)
chr2 (52-108)||(25082681-25082737)
chr2 (80-108)||(29695531-29695559)
chr2 (62-98)||(32667049-32667085)
[»] scaffold0989 (1 HSPs)
scaffold0989 (32-105)||(2936-3009)
[»] scaffold0029 (1 HSPs)
scaffold0029 (2-99)||(76864-76961)


Alignment Details
Target: chr4 (Bit Score: 479; Significance: 0; HSPs: 42)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 8 - 534
Target Start/End: Original strand, 42312848 - 42313374
Alignment:
Q  8 cggatagatgagacgttttaggaaagtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaattttaacatg 107  Q
    ||||||||||||||  || | |||||||||||||||||||||   ||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  42312848 cggatagatgagactcttgatgaaagtttataaagaggaggaacccctcacttcacaagccgattttgtgatgatgggttaggccccaaattttaacatg 42312947  T
Q  108 ggtggatccagcattatcttaaccctaaaaggatagtttactttagagattaaatctacctgagtgccccagtcaccgatatgatttcggcggatgagac 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42312948 ggtggatccagcattatcttaaccctaaaaggatagtttactttagagattaaatctacctgagtgccccagtcaccgatatgatttcggcggatgagac 42313047  T
Q  208 attccggctgacaaaattcaagcatccgtgcaattgtatccccaataatggttgacctcaggtgaccaacatgcatttcttttgctatattaggcgagga 307  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42313048 attccggctgacaaaattcaagcatccgtgcaattgtgtccccaataatggttgacctcaggtgaccaacatgcatttcttttgctatattaggcgagga 42313147  T
Q  308 aaagtcaaccagaatcctcttgacaggaagtcgaggagcccatgaatgaataccacaagtgagcatcttctgtaagctctgcaagagatcaaagacattt 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  42313148 aaagtcaaccagaatcctcttgacaggaagtcgaggagcccatgaatgaataccagaagtgagcatcttctgtaagctctgcaagagatcaaagacattt 42313247  T
Q  408 catgttaagagcataatccaattccaaacaacacatgctacaattcagatagtggcctagaaatttggagacatgtataaattttaatttaaaactaaga 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  42313248 catgttaagagcataatccaattccaaacaacacatgctacaattcagatagtggcctagaaatttggagacatgtataaattttaatttaaaactacga 42313347  T
Q  508 atggaaatacaatcaatcacctatgct 534  Q
    |||||||||||||||||||||| ||||    
T  42313348 atggaaatacaatcaatcacctgtgct 42313374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 53 - 108
Target Start/End: Complemental strand, 7806637 - 7806582
Alignment:
Q  53 cctcacttcacaagccgattttgtgatgatgagttaggccccaaattttaacatgg 108  Q
    |||||| |||||||||| |||||||||||||||||||||||||| |||||||||||    
T  7806637 cctcacctcacaagccggttttgtgatgatgagttaggccccaacttttaacatgg 7806582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 9 - 108
Target Start/End: Original strand, 33629678 - 33629777
Alignment:
Q  9 ggatagatgagacgttttaggaaagtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaattttaacatgg 108  Q
    |||||||||||||  || | || |||||||||| ||||||    |||||| |||||||||| |||||||| ||||||||||||||||||||| |||||||    
T  33629678 ggatagatgagactcttgatgagagtttataaataggaggtactcctcacatcacaagccggttttgtgacgatgagttaggccccaaatttcaacatgg 33629777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 32 - 105
Target Start/End: Original strand, 23018512 - 23018585
Alignment:
Q  32 agtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaattttaaca 105  Q
    |||||||||||||||||  | |||||| | |||||||| |||||| | ||||||||||||||||||||| ||||    
T  23018512 agtttataaagaggaggcattcctcaccttacaagccggttttgtaaggatgagttaggccccaaatttcaaca 23018585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 9 - 105
Target Start/End: Original strand, 33629940 - 33630035
Alignment:
Q  9 ggatagatgagacgttttaggaaagtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaattttaaca 105  Q
    |||||||||||||  || | || |||||||||| ||||||    |||||| ||||||||| | ||||||||||||||||||||||||||||| ||||    
T  33629940 ggatagatgagactcttgatgagagtttataaataggaggcactcctcacatcacaagcc-agtttgtgatgatgagttaggccccaaatttcaaca 33630035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 32 - 108
Target Start/End: Complemental strand, 45427314 - 45427238
Alignment:
Q  32 agtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaattttaacatgg 108  Q
    |||||||||||||||||    |||||| | |||||||| |||||| | ||||||||||||||||||||| |||||||    
T  45427314 agtttataaagaggaggcactcctcaccttacaagccggttttgtaaggatgagttaggccccaaatttcaacatgg 45427238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 32 - 105
Target Start/End: Complemental strand, 29669425 - 29669352
Alignment:
Q  32 agtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaattttaaca 105  Q
    |||||||||||||||||    |||||| | |||||||| |||||| | ||||||||||||||||||||| ||||    
T  29669425 agtttataaagaggaggcactcctcaccttacaagccggttttgtaaggatgagttaggccccaaatttcaaca 29669352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 32 - 105
Target Start/End: Original strand, 52214657 - 52214730
Alignment:
Q  32 agtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaattttaaca 105  Q
    |||||||||||||||||    |||||| | |||||||| |||||| | ||||||||||||||||||||| ||||    
T  52214657 agtttataaagaggaggcactcctcaccttacaagccggttttgtaaggatgagttaggccccaaatttcaaca 52214730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 32 - 105
Target Start/End: Original strand, 53740224 - 53740297
Alignment:
Q  32 agtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaattttaaca 105  Q
    |||||||||||||||||    |||||| | |||||||| |||||| | ||||||||||||||||||||| ||||    
T  53740224 agtttataaagaggaggcactcctcaccttacaagccggttttgtaaggatgagttaggccccaaatttcaaca 53740297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 32 - 108
Target Start/End: Original strand, 990589 - 990665
Alignment:
Q  32 agtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaattttaacatgg 108  Q
    |||||||||||||||||    |||||| | ||||| || |||||| | ||||||||||||||||||||| |||||||    
T  990589 agtttataaagaggaggcactcctcaccttacaagtcggttttgtaaggatgagttaggccccaaatttcaacatgg 990665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 32 - 108
Target Start/End: Complemental strand, 12016953 - 12016877
Alignment:
Q  32 agtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaattttaacatgg 108  Q
    |||||||||||||||||    |||||| | |||||||| |||||| | ||||||||||||||| ||||| |||||||    
T  12016953 agtttataaagaggaggcaatcctcaccttacaagccggttttgtaaggatgagttaggcccccaatttcaacatgg 12016877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 32 - 108
Target Start/End: Complemental strand, 27048470 - 27048394
Alignment:
Q  32 agtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaattttaacatgg 108  Q
    |||||||||||||||||    |||||| | |||||||| |||||| | ||||||||||| ||||||||| |||||||    
T  27048470 agtttataaagaggaggcactcctcaccttacaagccggttttgtaaggatgagttaggtcccaaatttcaacatgg 27048394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 2 - 106
Target Start/End: Original strand, 43943685 - 43943789
Alignment:
Q  2 ccacaacggatagatgagacgttttaggaaagtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaatttt 101  Q
    ||||| ||||||||| ||||  || || | |||||||||||||||||    |||||| | |||||||| |||||| | ||||||||||||||| |||||     
T  43943685 ccacatcggatagataagactcttgagaagagtttataaagaggaggcaatcctcaccttacaagccggttttgtaaggatgagttaggcccccaatttc 43943784  T
Q  102 aacat 106  Q
    |||||    
T  43943785 aacat 43943789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 32 - 108
Target Start/End: Original strand, 51469523 - 51469599
Alignment:
Q  32 agtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaattttaacatgg 108  Q
    |||||||||||||||||    |||||| | |||||||| || ||| | ||||||||||||||||||||| |||||||    
T  51469523 agtttataaagaggaggcactcctcaccttacaagccggttgtgtaaggatgagttaggccccaaatttcaacatgg 51469599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 32 - 108
Target Start/End: Original strand, 53739908 - 53739984
Alignment:
Q  32 agtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaattttaacatgg 108  Q
    ||||||||||||||||||   |||||  | |||||||| |||||| | ||||| ||||||||||||||| |||||||    
T  53739908 agtttataaagaggaggaactcctcagcttacaagccggttttgtaaggatgatttaggccccaaatttcaacatgg 53739984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 107
Target Start/End: Original strand, 5488409 - 5488484
Alignment:
Q  32 agtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaattttaacatg 107  Q
    |||||||||||||||||    |||||| | |||||||| |||||| | ||||||||||||| ||||||| ||||||    
T  5488409 agtttataaagaggaggcaatcctcaccttacaagccggttttgtaaggatgagttaggcctcaaatttcaacatg 5488484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 105
Target Start/End: Complemental strand, 17077032 - 17076929
Alignment:
Q  2 ccacaacggatagatgagacgttttaggaaagtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaatttt 101  Q
    ||||| ||||||||||||||  || | || |||| ||||||||||||    ||||||||  ||||||| |||||| | | |||||||||||||||||||     
T  17077032 ccacatcggatagatgagactcttgatgagagttcataaagaggaggcaaccctcactttgcaagccggttttgtaaggttgagttaggccccaaatttc 17076933  T
Q  102 aaca 105  Q
    ||||    
T  17076932 aaca 17076929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 69 - 108
Target Start/End: Complemental strand, 20545937 - 20545898
Alignment:
Q  69 gattttgtgatgatgagttaggccccaaattttaacatgg 108  Q
    |||||||| ||||||||||||||||||||||| |||||||    
T  20545937 gattttgtaatgatgagttaggccccaaatttcaacatgg 20545898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 105
Target Start/End: Complemental strand, 27048201 - 27048126
Alignment:
Q  30 aaagtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaattttaaca 105  Q
    |||||||||||||||||||    |||||| |  ||||||| |||||| | ||||||||||||||||||||| ||||    
T  27048201 aaagtttataaagaggaggcactcctcaccttgcaagccggttttgtaaggatgagttaggccccaaatttcaaca 27048126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 53 - 108
Target Start/End: Complemental strand, 27634572 - 27634517
Alignment:
Q  53 cctcacttcacaagccgattttgtgatgatgagttaggccccaaattttaacatgg 108  Q
    |||||| |||||||||| |||||| | ||||||||||||||||||||  |||||||    
T  27634572 cctcacctcacaagccggttttgtaacgatgagttaggccccaaattacaacatgg 27634517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 66 - 105
Target Start/End: Complemental strand, 35645258 - 35645219
Alignment:
Q  66 gccgattttgtgatgatgagttaggccccaaattttaaca 105  Q
    |||| |||||||||||||||||||||||||||||| ||||    
T  35645258 gccggttttgtgatgatgagttaggccccaaatttcaaca 35645219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 66 - 105
Target Start/End: Complemental strand, 35645547 - 35645508
Alignment:
Q  66 gccgattttgtgatgatgagttaggccccaaattttaaca 105  Q
    |||| |||||||||||||||||||||||||||||| ||||    
T  35645547 gccgtttttgtgatgatgagttaggccccaaatttcaaca 35645508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 32 - 106
Target Start/End: Complemental strand, 12016745 - 12016671
Alignment:
Q  32 agtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaattttaacat 106  Q
    |||||||||||||||||    |||||| | |||||||| |||||| | ||||||||||||||| ||||| |||||    
T  12016745 agtttataaagaggaggcaatcctcaccttacaagccggttttgtaaggatgagttaggcccccaatttcaacat 12016671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 2 - 108
Target Start/End: Complemental strand, 17077236 - 17077130
Alignment:
Q  2 ccacaacggatagatgagacgttttaggaaagtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaatttt 101  Q
    ||||| ||||||||||||||  || | || |||| ||||||||||||    |||||| |  ||||||| |||||| | | |||||||||||||||||||     
T  17077236 ccacatcggatagatgagactcttgatgagagttcataaagaggaggcaaccctcaccttgcaagccggttttgtaaggttgagttaggccccaaatttc 17077137  T
Q  102 aacatgg 108  Q
    |||||||    
T  17077136 aacatgg 17077130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 32 - 106
Target Start/End: Complemental strand, 25753667 - 25753593
Alignment:
Q  32 agtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaattttaacat 106  Q
    |||||||||||||||||    |||||| | |||||||| |||||| | ||||||||||| ||||||||| |||||    
T  25753667 agtttataaagaggaggcaatcctcaccttacaagccggttttgtaaggatgagttaggtcccaaatttcaacat 25753593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 53 - 99
Target Start/End: Complemental strand, 27634137 - 27634091
Alignment:
Q  53 cctcacttcacaagccgattttgtgatgatgagttaggccccaaatt 99  Q
    |||||| |||||| |||||||||| | ||||||||||||||||||||    
T  27634137 cctcacctcacaaaccgattttgtaaggatgagttaggccccaaatt 27634091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 62 - 108
Target Start/End: Complemental strand, 27634358 - 27634312
Alignment:
Q  62 acaagccgattttgtgatgatgagttaggccccaaattttaacatgg 108  Q
    ||||||||||||||| | ||||||||||||||||||||  |||||||    
T  27634358 acaagccgattttgtaaggatgagttaggccccaaattacaacatgg 27634312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 30 - 100
Target Start/End: Original strand, 43972395 - 43972465
Alignment:
Q  30 aaagtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaattt 100  Q
    |||||| ||||||||||||    |||||| | |||||||| |||||| | |||||||||||||||||||||    
T  43972395 aaagttgataaagaggaggcactcctcaccttacaagccggttttgtaaggatgagttaggccccaaattt 43972465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 32 - 106
Target Start/End: Original strand, 51470525 - 51470599
Alignment:
Q  32 agtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaattttaacat 106  Q
    ||||||||| |||||||    |||||| | |||||||| |||||| | ||||||||||||||||||||| |||||    
T  51470525 agtttataaggaggaggctctcctcaccttacaagccggttttgtaaggatgagttaggccccaaatttcaacat 51470599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 97
Target Start/End: Complemental strand, 21497745 - 21497680
Alignment:
Q  32 agtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaa 97  Q
    |||||||||||||||||    |||||| | |||||||| |||||| | ||||||||||||||||||    
T  21497745 agtttataaagaggaggcactcctcaccttacaagccggttttgtaaggatgagttaggccccaaa 21497680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 97
Target Start/End: Original strand, 21498229 - 21498294
Alignment:
Q  32 agtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaa 97  Q
    |||||||||||||||||    |||||| | |||||||| |||||| | ||||||||||||||||||    
T  21498229 agtttataaagaggaggcactcctcaccttacaagccggttttgtaaggatgagttaggccccaaa 21498294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 105
Target Start/End: Original strand, 28395223 - 28395292
Alignment:
Q  36 tataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaattttaaca 105  Q
    |||||||||||||    |||||| | |||||||| |||||| | ||||||||||||||||||||| ||||    
T  28395223 tataaagaggaggcaatcctcaccttacaagccggttttgtaaggatgagttaggccccaaatttcaaca 28395292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 105
Target Start/End: Original strand, 29113491 - 29113564
Alignment:
Q  32 agtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaattttaaca 105  Q
    |||||||||||||||||    |||||| | |||||| | |||||| | ||||||||||||||||||||| ||||    
T  29113491 agtttataaagaggaggcaatcctcaccttacaagctggttttgtaaggatgagttaggccccaaatttcaaca 29113564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 96
Target Start/End: Complemental strand, 49380971 - 49380878
Alignment:
Q  3 cacaacggatagatgagacgttttaggaaagtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaa 96  Q
    |||| ||||||||| ||||  || || | |||||||||||||||||    |||||| | |||||||| |||||||||||| |||||||| ||||    
T  49380971 cacatcggatagataagactcttgagaagagtttataaagaggaggcaatcctcaccttacaagccggttttgtgatgataagttaggctccaa 49380878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 53 - 105
Target Start/End: Complemental strand, 17222708 - 17222656
Alignment:
Q  53 cctcacttcacaagccgattttgtgatgatgagttaggccccaaattttaaca 105  Q
    |||||| |||||||||| |||||| | |||| |||||||||||||||| ||||    
T  17222708 cctcacctcacaagccggttttgtaaggatgtgttaggccccaaatttcaaca 17222656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 32 - 108
Target Start/End: Original strand, 28245830 - 28245906
Alignment:
Q  32 agtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaattttaacatgg 108  Q
    |||||||||||||||||    |||||| |  ||||||| |||||| | ||||||||||||||| ||||| |||||||    
T  28245830 agtttataaagaggaggcaatcctcaccttgcaagccggttttgtaaggatgagttaggcccccaatttcaacatgg 28245906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 32 - 108
Target Start/End: Complemental strand, 29669740 - 29669664
Alignment:
Q  32 agtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaattttaacatgg 108  Q
    |||||||||||||||||    |||||| | |||||||| |||||| | |||||||||  |||||||||| |||||||    
T  29669740 agtttataaagaggaggcactcctcaccttacaagccggttttgtaaggatgagttaaaccccaaatttcaacatgg 29669664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 53 - 105
Target Start/End: Complemental strand, 36558507 - 36558455
Alignment:
Q  53 cctcacttcacaagccgattttgtgatgatgagttaggccccaaattttaaca 105  Q
    |||||| | |||||||| |||||| | ||||||||||||||||||||| ||||    
T  36558507 cctcaccttacaagccggttttgtaaggatgagttaggccccaaatttcaaca 36558455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 32 - 100
Target Start/End: Complemental strand, 45426998 - 45426930
Alignment:
Q  32 agtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaattt 100  Q
    |||||||||||||||||    |||||| | ||||| || |||||| | |||||||||||||||||||||    
T  45426998 agtttataaagaggaggcactcctcaccttacaagtcggttttgtaaggatgagttaggccccaaattt 45426930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 53 - 105
Target Start/End: Original strand, 50858075 - 50858127
Alignment:
Q  53 cctcacttcacaagccgattttgtgatgatgagttaggccccaaattttaaca 105  Q
    |||||| | |||||||| |||||| | ||||||||||||||||||||| ||||    
T  50858075 cctcaccttacaagccggttttgtaaggatgagttaggccccaaatttcaaca 50858127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 62 - 106
Target Start/End: Original strand, 50858397 - 50858441
Alignment:
Q  62 acaagccgattttgtgatgatgagttaggccccaaattttaacat 106  Q
    |||||||| |||||| | ||||||||||||||||||||| |||||    
T  50858397 acaagccggttttgtaaggatgagttaggccccaaatttcaacat 50858441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 62 - 106
Target Start/End: Original strand, 51470716 - 51470760
Alignment:
Q  62 acaagccgattttgtgatgatgagttaggccccaaattttaacat 106  Q
    |||||||| |||||| | ||||||||||||||||||||| |||||    
T  51470716 acaagccggttttgtaaggatgagttaggccccaaatttcaacat 51470760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 163; Significance: 8e-87; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 163; E-Value: 8e-87
Query Start/End: Original strand, 140 - 390
Target Start/End: Original strand, 47977596 - 47977846
Alignment:
Q  140 atagtttactttagagattaaatctacctgagtgccccagtcaccgatatgatttcggcggatgagacattccggctgacaaaattcaagcatccgtgca 239  Q
    ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||| |||||     
T  47977596 atagtttacttcagagattaaatctacctgagtaccccagtcaccgatatgatttcggcggatcagacattcaggctggcaaaattcaagcattcgtgcc 47977695  T
Q  240 attgtatccccaataatggttgacctcaggtgaccaacatgcatttcttttgctatattaggcgaggaaaagtcaaccagaatcctcttgacaggaagtc 339  Q
    | ||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||||||||||||| || ||||||||  |||||||    
T  47977696 agtgtgtccccaataatggttgacctcaggtgaccaacatgcatttctttggctatattcggtgaggaaaagtcaaccataaccctcttgattggaagtc 47977795  T
Q  340 gaggagcccatgaatgaataccacaagtgagcatcttctgtaagctctgca 390  Q
    |||| |||||||||| |||||||   || ||||||||||||||||||||||    
T  47977796 gaggtgcccatgaatcaataccatcggtaagcatcttctgtaagctctgca 47977846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 53 - 106
Target Start/End: Original strand, 49895216 - 49895269
Alignment:
Q  53 cctcacttcacaagccgattttgtgatgatgagttaggccccaaattttaacat 106  Q
    ||||||||||||||||| |||||||||||||||||| ||||||||||| |||||    
T  49895216 cctcacttcacaagccggttttgtgatgatgagttaagccccaaatttcaacat 49895269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 2 - 105
Target Start/End: Original strand, 1233938 - 1234041
Alignment:
Q  2 ccacaacggatagatgagacgttttaggaaagtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaatttt 101  Q
    ||||| ||||||||||||||  || | || ||||||||||||||||     |||||| |||||||| | ||||||||||||||||||| ||||||||||     
T  1233938 ccacatcggatagatgagactcttgatgagagtttataaagaggagacactcctcacctcacaagctggttttgtgatgatgagttagaccccaaatttc 1234037  T
Q  102 aaca 105  Q
    ||||    
T  1234038 aaca 1234041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 55 - 105
Target Start/End: Complemental strand, 24382190 - 24382140
Alignment:
Q  55 tcacttcacaagccgattttgtgatgatgagttaggccccaaattttaaca 105  Q
    |||| |||||||||| ||||||||||||||||||||| |||||||||||||    
T  24382190 tcacctcacaagccggttttgtgatgatgagttaggctccaaattttaaca 24382140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 32 - 96
Target Start/End: Original strand, 11590629 - 11590693
Alignment:
Q  32 agtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaa 96  Q
    |||||||||||||||||    |||||| |||||||||| ||||||||||||||||||||| ||||    
T  11590629 agtttataaagaggaggcaatcctcacctcacaagccggttttgtgatgatgagttaggctccaa 11590693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 32 - 108
Target Start/End: Complemental strand, 24382422 - 24382346
Alignment:
Q  32 agtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaattttaacatgg 108  Q
    |||||||||||||||||    |||||  ||||||| || |||||||||||||| ||||||||||||||| |||||||    
T  24382422 agtttataaagaggaggcactcctcatctcacaagtcggttttgtgatgatgaattaggccccaaatttcaacatgg 24382346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 32 - 91
Target Start/End: Original strand, 11590462 - 11590521
Alignment:
Q  32 agtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggc 91  Q
    |||||||||||||||||    |||||| |||||||||| |||||||||||||||||||||    
T  11590462 agtttataaagaggaggcaatcctcacctcacaagccggttttgtgatgatgagttaggc 11590521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 2 - 100
Target Start/End: Original strand, 15392037 - 15392135
Alignment:
Q  2 ccacaacggatagatgagacgttttaggaaagtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaattt 100  Q
    ||||| ||||||||| ||||  || || | ||| |||||||||||||    |||||||| |||||||| |||||| | |||||||||||||||||||||    
T  15392037 ccacatcggatagataagactcttgagaagagtatataaagaggaggcaatcctcactttacaagccggttttgtaaggatgagttaggccccaaattt 15392135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 34 - 108
Target Start/End: Original strand, 20735566 - 20735640
Alignment:
Q  34 tttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaattttaacatgg 108  Q
    |||||||||||||||    |||||| | |||||||| |||||| | ||||||||||||||||||||| |||||||    
T  20735566 tttataaagaggaggcactcctcaccttacaagccggttttgtaaggatgagttaggccccaaatttcaacatgg 20735640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 54 - 108
Target Start/End: Complemental strand, 24382608 - 24382554
Alignment:
Q  54 ctcacttcacaagccgattttgtgatgatgagttaggccccaaattttaacatgg 108  Q
    ||||| |||||||||| |||||||||||| |||||||||| |||||| |||||||    
T  24382608 ctcacctcacaagccggttttgtgatgataagttaggcccgaaatttgaacatgg 24382554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 36 - 105
Target Start/End: Original strand, 15392150 - 15392219
Alignment:
Q  36 tataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaattttaaca 105  Q
    |||||||||||||    |||||| | ||||||||||||||| | ||||||||||||||||||||| ||||    
T  15392150 tataaagaggaggcaatcctcaccttacaagccgattttgtaaggatgagttaggccccaaatttcaaca 15392219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 55 - 100
Target Start/End: Original strand, 17412597 - 17412642
Alignment:
Q  55 tcacttcacaagccgattttgtgatgatgagttaggccccaaattt 100  Q
    |||||||||||||||||||||||| ||||| |||| ||||||||||    
T  17412597 tcacttcacaagccgattttgtgacgatgaattagaccccaaattt 17412642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 32 - 105
Target Start/End: Original strand, 43423321 - 43423394
Alignment:
Q  32 agtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaattttaaca 105  Q
    |||||||||||||||||    |||||| | |||||||  |||||| | ||||||||||||||||||||||||||    
T  43423321 agtttataaagaggaggcactcctcaccttacaagccagttttgtaaggatgagttaggccccaaattttaaca 43423394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 32 - 100
Target Start/End: Complemental strand, 22892495 - 22892427
Alignment:
Q  32 agtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaattt 100  Q
    |||||||||||||||||    |||||| |||||| ||| |||||| | |||||||||||||||||||||    
T  22892495 agtttataaagaggaggcactcctcacctcacaatccggttttgtaaggatgagttaggccccaaattt 22892427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 32 - 108
Target Start/End: Complemental strand, 29273287 - 29273211
Alignment:
Q  32 agtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaattttaacatgg 108  Q
    ||||||||||| |||||    |||||| | |||||||| |||||| | ||||||||||||||||||||| |||||||    
T  29273287 agtttataaaggggaggcaatcctcaccttacaagccggttttgtaaggatgagttaggccccaaatttcaacatgg 29273211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 53 - 105
Target Start/End: Original strand, 34076665 - 34076717
Alignment:
Q  53 cctcacttcacaagccgattttgtgatgatgagttaggccccaaattttaaca 105  Q
    ||||||||||||| |||||||| | | ||||||||||||||||||||| ||||    
T  34076665 cctcacttcacaaaccgattttataaggatgagttaggccccaaatttcaaca 34076717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 2 - 106
Target Start/End: Complemental strand, 39649176 - 39649072
Alignment:
Q  2 ccacaacggatagatgagacgttttaggaaagtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaatttt 101  Q
    ||||| ||||||||| ||||  || || | |||||||||||||||||    |||||| | |||||||| |||||| | ||||||||| |||||||||||     
T  39649176 ccacatcggatagataagactcttgagaagagtttataaagaggaggcaatcctcaccttacaagccggttttgtaaggatgagttatgccccaaatttc 39649077  T
Q  102 aacat 106  Q
    |||||    
T  39649076 aacat 39649072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 54 - 105
Target Start/End: Complemental strand, 2997096 - 2997045
Alignment:
Q  54 ctcacttcacaagccgattttgtgatgatgagttaggccccaaattttaaca 105  Q
    ||||| |||||||||| |||||| | ||||||||||||||||||||| ||||    
T  2997096 ctcacctcacaagccggttttgtaaggatgagttaggccccaaatttcaaca 2997045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 53 - 108
Target Start/End: Complemental strand, 2997302 - 2997247
Alignment:
Q  53 cctcacttcacaagccgattttgtgatgatgagttaggccccaaattttaacatgg 108  Q
    |||||| ||| |||||| |||||| | ||||||||||||||||||||| |||||||    
T  2997302 cctcacctcataagccggttttgtaaagatgagttaggccccaaatttcaacatgg 2997247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 53 - 108
Target Start/End: Complemental strand, 24382817 - 24382762
Alignment:
Q  53 cctcacttcacaagccgattttgtgatgatgagttaggccccaaattttaacatgg 108  Q
    ||||||||||| ||||  |||||||| |||||||| |||||||||||| |||||||    
T  24382817 cctcacttcaccagccagttttgtgaggatgagtttggccccaaatttcaacatgg 24382762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 53 - 108
Target Start/End: Complemental strand, 29273107 - 29273052
Alignment:
Q  53 cctcacttcacaagccgattttgtgatgatgagttaggccccaaattttaacatgg 108  Q
    |||||| | |||||||| |||||| | ||||||||||||||||||||| |||||||    
T  29273107 cctcaccttacaagccggttttgtaaggatgagttaggccccaaatttcaacatgg 29273052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 62 - 108
Target Start/End: Original strand, 9380972 - 9381018
Alignment:
Q  62 acaagccgattttgtgatgatgagttaggccccaaattttaacatgg 108  Q
    |||||||| |||||| | ||||||||||||||||||||| |||||||    
T  9380972 acaagccggttttgtaaggatgagttaggccccaaatttcaacatgg 9381018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 32 - 106
Target Start/End: Original strand, 17419829 - 17419903
Alignment:
Q  32 agtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaattttaacat 106  Q
    |||||||||||||||||    |||||| | |||||||| |||||| | |||||||||| |||||||||| |||||    
T  17419829 agtttataaagaggaggcactcctcaccttacaagccggttttgtaaggatgagttagaccccaaatttcaacat 17419903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 62 - 108
Target Start/End: Complemental strand, 19481424 - 19481378
Alignment:
Q  62 acaagccgattttgtgatgatgagttaggccccaaattttaacatgg 108  Q
    |||||||| |||||| | ||||||||||||||||||||| |||||||    
T  19481424 acaagccggttttgtaaggatgagttaggccccaaatttcaacatgg 19481378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 62 - 108
Target Start/End: Original strand, 46098549 - 46098595
Alignment:
Q  62 acaagccgattttgtgatgatgagttaggccccaaattttaacatgg 108  Q
    |||||||| |||||  | |||||||||||||||||||||||||||||    
T  46098549 acaagccggttttgcaaggatgagttaggccccaaattttaacatgg 46098595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 105
Target Start/End: Complemental strand, 4022187 - 4022114
Alignment:
Q  32 agtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaattttaaca 105  Q
    |||||||||||||||||    |||||| | |||||||  |||||| | ||||||||||||||||||||| ||||    
T  4022187 agtttataaagaggaggcactcctcaccttacaagccagttttgtaaggatgagttaggccccaaatttcaaca 4022114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 105
Target Start/End: Original strand, 31305753 - 31305826
Alignment:
Q  32 agtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaattttaaca 105  Q
    |||||||||||||||||    |||||| | |||||||| |||||| | |||||||||||| |||||||| ||||    
T  31305753 agtttataaagaggaggcactcctcaccttacaagccggttttgtaaggatgagttaggctccaaatttcaaca 31305826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 60 - 100
Target Start/End: Complemental strand, 22892722 - 22892682
Alignment:
Q  60 tcacaagccgattttgtgatgatgagttaggccccaaattt 100  Q
    |||||||||| |||||| | |||||||||||||||||||||    
T  22892722 tcacaagccggttttgtaaggatgagttaggccccaaattt 22892682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 151; Significance: 1e-79; HSPs: 35)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 140 - 390
Target Start/End: Complemental strand, 51565256 - 51565006
Alignment:
Q  140 atagtttactttagagattaaatctacctgagtgccccagtcaccgatatgatttcggcggatgagacattccggctgacaaaattcaagcatccgtgca 239  Q
    ||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| | |||||| ||||| |||||||||||||| ||||||    
T  51565256 atagtatactttagagattaaatcaacctgagtgccccagtcaccgatatgatttctgcggatcaaacattcaggctggcaaaattcaagcattcgtgca 51565157  T
Q  240 attgtatccccaataatggttgacctcaggtgaccaacatgcatttcttttgctatattaggcgaggaaaagtcaaccagaatcctcttgacaggaagtc 339  Q
    | ||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||||| || ||||||||  |||||||    
T  51565156 agtgtgtccccgataatggttgacctgaggtgaccaacatgcatttcttttgctatattgggtgaggaaaagtcaaccataaccctcttgattggaagtc 51565057  T
Q  340 gaggagcccatgaatgaataccacaagtgagcatcttctgtaagctctgca 390  Q
    |||| |||||||||| |||||||   || |||||| |||||||||||||||    
T  51565056 gaggtgcccatgaatcaataccatcggtaagcatcctctgtaagctctgca 51565006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 3 - 105
Target Start/End: Original strand, 42604921 - 42605023
Alignment:
Q  3 cacaacggatagatgagacgttttaggaaagtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaatttta 102  Q
    |||| ||||||||||||||  || | | ||||||||||||| | ||    ||||||||||||| | |||||||||||||||||||||||| ||||||| |    
T  42604921 cacatcggatagatgagactcttgatggaagtttataaagaaggggcactcctcacttcacaaactgattttgtgatgatgagttaggcctcaaatttca 42605020  T
Q  103 aca 105  Q
    |||    
T  42605021 aca 42605023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 32 - 108
Target Start/End: Original strand, 44573681 - 44573757
Alignment:
Q  32 agtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaattttaacatgg 108  Q
    |||||||||||||||||    |||||| | |||||||| |||||| | ||||||||||||||||||||| |||||||    
T  44573681 agtttataaagaggaggcactcctcaccttacaagccggttttgtaaggatgagttaggccccaaatttcaacatgg 44573757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 32 - 108
Target Start/End: Original strand, 50692365 - 50692441
Alignment:
Q  32 agtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaattttaacatgg 108  Q
    |||||||||||||||||    |||||| | |||||||| |||||| | ||||||||||||||||||||| |||||||    
T  50692365 agtttataaagaggaggcaatcctcaccttacaagccggttttgtaaggatgagttaggccccaaatttcaacatgg 50692441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 30 - 105
Target Start/End: Complemental strand, 21832263 - 21832188
Alignment:
Q  30 aaagtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaattttaaca 105  Q
    |||||||||||||| ||||    |||||| |||||||||| |||||| | ||||||||||||||||||||| ||||    
T  21832263 aaagtttataaagatgaggcaatcctcacctcacaagccggttttgtaaggatgagttaggccccaaatttcaaca 21832188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 40230732 - 40230625
Alignment:
Q  1 tccacaacggatagatgagacgttttaggaaagtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaattt 100  Q
    |||||| ||||||||||||||  || | || |||||||||||||||||    |||||| | |||||||| |||||| | | ||||||| |||||||||||    
T  40230732 tccacatcggatagatgagactcttgatgagagtttataaagaggaggcaatcctcaccttacaagccggttttgtaaggttgagttaagccccaaattt 40230633  T
Q  101 taacatgg 108  Q
     |||||||    
T  40230632 caacatgg 40230625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 2 - 108
Target Start/End: Complemental strand, 9264592 - 9264486
Alignment:
Q  2 ccacaacggatagatgagacgttttaggaaagtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaatttt 101  Q
    ||||| ||||||||| ||||  || || | ||| |||||||||||||    |||||||| |||||||| |||||| | ||||||||||||||||||||      
T  9264592 ccacatcggatagataagactcttgagaagagtatataaagaggaggcaatcctcactttacaagccggttttgtaaggatgagttaggccccaaattac 9264493  T
Q  102 aacatgg 108  Q
    |||||||    
T  9264492 aacatgg 9264486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 2 - 108
Target Start/End: Complemental strand, 51642727 - 51642621
Alignment:
Q  2 ccacaacggatagatgagacgttttaggaaagtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaatttt 101  Q
    ||||| ||||||||| ||||  || || | ||| |||||||||||||    |||||| | |||||||| |||||| | |||||||||||||||||||||     
T  51642727 ccacatcggatagataagactcttgagaagagtatataaagaggaggcaatcctcaccttacaagccggttttgtaaggatgagttaggccccaaatttc 51642628  T
Q  102 aacatgg 108  Q
    |||||||    
T  51642627 aacatgg 51642621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 32 - 105
Target Start/End: Original strand, 44573978 - 44574051
Alignment:
Q  32 agtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaattttaaca 105  Q
    |||||||||||||||||    |||||| | |||||||| |||||| | ||||||||||||||||||||| ||||    
T  44573978 agtttataaagaggaggcactcctcaccttacaagccggttttgtaaggatgagttaggccccaaatttcaaca 44574051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 32 - 105
Target Start/End: Original strand, 50692568 - 50692641
Alignment:
Q  32 agtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaattttaaca 105  Q
    |||||||||||||||||    |||||| | |||||||| |||||| | ||||||||||||||||||||| ||||    
T  50692568 agtttataaagaggaggcaatcctcaccttacaagccggttttgtaaggatgagttaggccccaaatttcaaca 50692641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 2 - 106
Target Start/End: Complemental strand, 9264178 - 9264074
Alignment:
Q  2 ccacaacggatagatgagacgttttaggaaagtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaatttt 101  Q
    ||||| ||||||||| ||||  || || | ||| |||||||||||||    |||||| | |||||||| |||||| | |||||||||||||||||||||     
T  9264178 ccacatcggatagataagactcttgagaagagtatataaagaggaggcaatcctcaccttacaagccggttttgtaaggatgagttaggccccaaatttc 9264079  T
Q  102 aacat 106  Q
    |||||    
T  9264078 aacat 9264074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 36 - 108
Target Start/End: Complemental strand, 9264351 - 9264279
Alignment:
Q  36 tataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaattttaacatgg 108  Q
    |||||||||||||    |||||| | |||||||| |||||| | ||||||||||||||||||||| |||||||    
T  9264351 tataaagaggaggcaatcctcaccttacaagccggttttgtaaggatgagttaggccccaaatttcaacatgg 9264279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 36 - 108
Target Start/End: Complemental strand, 22407706 - 22407634
Alignment:
Q  36 tataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaattttaacatgg 108  Q
    |||||||||||||    |||||| | |||||||| |||||| | ||||||||||||||||||||| |||||||    
T  22407706 tataaagaggaggcactcctcaccttacaagccggttttgtaaggatgagttaggccccaaatttcaacatgg 22407634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 32 - 108
Target Start/End: Complemental strand, 39078833 - 39078757
Alignment:
Q  32 agtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaattttaacatgg 108  Q
    |||||||||||||||||    |||||| | |||||||| |||||| | ||||||||||||||||||||  |||||||    
T  39078833 agtttataaagaggaggcaatcctcaccttacaagccggttttgtaaggatgagttaggccccaaattacaacatgg 39078757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 32 - 108
Target Start/End: Complemental strand, 39956736 - 39956660
Alignment:
Q  32 agtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaattttaacatgg 108  Q
    |||||||||||||||||    |||||| | |||||||| |||||| | |||||||||||| |||||||| |||||||    
T  39956736 agtttataaagaggaggcaatcctcaccttacaagccggttttgtaaggatgagttaggctccaaatttcaacatgg 39956660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 40230527 - 40230424
Alignment:
Q  1 tccacaacggatagatgagacgttttaggaaagtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaattt 100  Q
    |||||| ||||||||||||||  || | || |||||||||||||||| | | |||||| | || ||||| |||||| | | |||||||||||||||||||    
T  40230527 tccacatcggatagatgagactcttgatgagagtttataaagaggagcaat-cctcaccttacgagccggttttgtaaggttgagttaggccccaaattt 40230429  T
Q  101 taaca 105  Q
     ||||    
T  40230428 caaca 40230424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 53 - 108
Target Start/End: Original strand, 4255573 - 4255628
Alignment:
Q  53 cctcacttcacaagccgattttgtgatgatgagttaggccccaaattttaacatgg 108  Q
    |||||||| |||||||| |||||  | ||||||||||||||||||||| |||||||    
T  4255573 cctcactttacaagccggttttgcaaggatgagttaggccccaaatttcaacatgg 4255628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 33 - 108
Target Start/End: Original strand, 50057072 - 50057147
Alignment:
Q  33 gtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaattttaacatgg 108  Q
    ||||||||||||||||    |||||| | |||||||  |||||| | ||||||||||||||||||||| |||||||    
T  50057072 gtttataaagaggaggcacccctcaccttacaagccagttttgtaaggatgagttaggccccaaatttcaacatgg 50057147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 62 - 108
Target Start/End: Original strand, 4255991 - 4256037
Alignment:
Q  62 acaagccgattttgtgatgatgagttaggccccaaattttaacatgg 108  Q
    |||||||| |||||| | ||||||||||||||||||||| |||||||    
T  4255991 acaagccggttttgtaaggatgagttaggccccaaatttcaacatgg 4256037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 53 - 107
Target Start/End: Original strand, 24539217 - 24539271
Alignment:
Q  53 cctcacttcacaagccgattttgtgatgatgagttaggccccaaattttaacatg 107  Q
    |||||| | ||||||||||||||| | |||||||||||||||||| || ||||||    
T  24539217 cctcaccttacaagccgattttgtaaggatgagttaggccccaaacttcaacatg 24539271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 30 - 96
Target Start/End: Original strand, 49477367 - 49477433
Alignment:
Q  30 aaagtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaa 96  Q
    |||||||||||||||||||    |||||| | |||||||| |||||| | |||||||||||||||||    
T  49477367 aaagtttataaagaggaggcaatcctcaccttacaagccggttttgtaaggatgagttaggccccaa 49477433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 2 - 96
Target Start/End: Original strand, 49477546 - 49477640
Alignment:
Q  2 ccacaacggatagatgagacgttttaggaaagtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaa 96  Q
    ||||| ||||||||| ||||  || || | |||||||||||||||||    |||||| | |||||||| |||||| | |||||||||||||||||    
T  49477546 ccacatcggatagataagactcttgagaagagtttataaagaggaggcaatcctcaccttacaagccggttttgtaaggatgagttaggccccaa 49477640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 101
Target Start/End: Complemental strand, 13769353 - 13769284
Alignment:
Q  32 agtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaatttt 101  Q
    |||||||||||||||||    |||||| | |||||| | |||||| | ||||||||||||||||||||||    
T  13769353 agtttataaagaggaggcactcctcaccttacaagctggttttgtaaggatgagttaggccccaaatttt 13769284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 105
Target Start/End: Original strand, 21750517 - 21750590
Alignment:
Q  32 agtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaattttaaca 105  Q
    |||||||||||||||||    |||||| | |||||||  |||||| | ||||||||||||||||||||| ||||    
T  21750517 agtttataaagaggaggcactcctcaccttacaagccagttttgtaaggatgagttaggccccaaatttcaaca 21750590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 105
Target Start/End: Complemental strand, 22407499 - 22407430
Alignment:
Q  36 tataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaattttaaca 105  Q
    |||||||||||||    |||||| | |||||||| |||||| | ||||||||||||||||||||| ||||    
T  22407499 tataaagaggaggcactcctcaccttacaagccggttttgtaaggatgagttaggccccaaatttcaaca 22407430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 105
Target Start/End: Complemental strand, 34715517 - 34715444
Alignment:
Q  32 agtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaattttaaca 105  Q
    |||||||||||||||||    |||||| | |||||||| |||||| | ||||||||| ||||||||||| ||||    
T  34715517 agtttataaagaggaggcactcctcaccttacaagccggttttgtaaggatgagttatgccccaaatttcaaca 34715444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 105
Target Start/End: Original strand, 42258956 - 42259025
Alignment:
Q  36 tataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaattttaaca 105  Q
    |||||||||||||    |||||| | ||||||||||||||  | |||||||||||| |||||||||||||    
T  42258956 tataaagaggaggcaatcctcaccttacaagccgattttgcaaggatgagttaggctccaaattttaaca 42259025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 105
Target Start/End: Complemental strand, 51642486 - 51642417
Alignment:
Q  36 tataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaattttaaca 105  Q
    |||||||||||||    |||||| | |||||||| |||||| | ||||||||||||||||||||| ||||    
T  51642486 tataaagaggaggcaatcctcaccttacaagccggttttgtaaggatgagttaggccccaaatttcaaca 51642417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 32 - 100
Target Start/End: Complemental strand, 31564065 - 31563997
Alignment:
Q  32 agtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaattt 100  Q
    |||||||||||||||||    |||||| | |||||||| |||||| | | |||||||||||||||||||    
T  31564065 agtttataaagaggaggcactcctcaccttacaagccggttttgtaaagttgagttaggccccaaattt 31563997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 32 - 96
Target Start/End: Original strand, 34992619 - 34992683
Alignment:
Q  32 agtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaa 96  Q
    |||||||||||||||||    |||||  |||||||||| |||||||  |||||||||||||||||    
T  34992619 agtttataaagaggaggcaatcctcatctcacaagccggttttgtgcggatgagttaggccccaa 34992683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 32 - 108
Target Start/End: Complemental strand, 38300814 - 38300738
Alignment:
Q  32 agtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaattttaacatgg 108  Q
    |||||||||||||||||    |||||| | |||||||| ||||||   ||||||||||||| ||||||| |||||||    
T  38300814 agtttataaagaggaggcactcctcaccttacaagccggttttgtacggatgagttaggcctcaaatttcaacatgg 38300738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 62 - 106
Target Start/End: Complemental strand, 48685344 - 48685300
Alignment:
Q  62 acaagccgattttgtgatgatgagttaggccccaaattttaacat 106  Q
    |||||||| |||||| | ||||||||||||||||||||| |||||    
T  48685344 acaagccggttttgtaaggatgagttaggccccaaatttcaacat 48685300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 68 - 108
Target Start/End: Original strand, 50057237 - 50057277
Alignment:
Q  68 cgattttgtgatgatgagttaggccccaaattttaacatgg 108  Q
    ||||||||| | ||||||||||||||||||||| |||||||    
T  50057237 cgattttgtaaggatgagttaggccccaaatttcaacatgg 50057277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 68 - 108
Target Start/End: Original strand, 50057367 - 50057407
Alignment:
Q  68 cgattttgtgatgatgagttaggccccaaattttaacatgg 108  Q
    ||||||||| | ||||||||||||||||||||| |||||||    
T  50057367 cgattttgtaaggatgagttaggccccaaatttcaacatgg 50057407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 53 - 105
Target Start/End: Complemental strand, 51338444 - 51338392
Alignment:
Q  53 cctcacttcacaagccgattttgtgatgatgagttaggccccaaattttaaca 105  Q
    |||||| | |||||||| |||||| | ||||||||||||||||||||| ||||    
T  51338444 cctcaccttacaagccggttttgtaaggatgagttaggccccaaatttcaaca 51338392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 6e-20; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 220 - 362
Target Start/End: Complemental strand, 34028974 - 34028832
Alignment:
Q  220 aaaattcaagcatccgtgcaattgtatccccaataatggttgacctcaggtgaccaacatgcatttcttttgctatattaggcgaggaaaagtcaaccag 319  Q
    ||||||||||||| || || | ||| || ||||| ||||| || || |||||||||||||||||||| |||||||||||||| |||||||| |||||||     
T  34028974 aaaattcaagcatgcgggctaatgtgtctccaattatggtagatctaaggtgaccaacatgcatttcctttgctatattaggagaggaaaaatcaaccat 34028875  T
Q  320 aatcctcttgacaggaagtcgaggagcccatgaatgaatacca 362  Q
    |  |||| |||  ||||||||||| ||||| | || |||||||    
T  34028874 agccctcctgattggaagtcgaggtgcccaggtatcaatacca 34028832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 11316854 - 11316961
Alignment:
Q  1 tccacaacggatagatgagacgttttaggaaagtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaattt 100  Q
    |||||| ||||||||||||||  || | || |||||||||||||| ||    ||||||||||||||||| |||||| | | ||||||||||||| |||||    
T  11316854 tccacatcggatagatgagactcttgatgagagtttataaagagggggcactcctcacttcacaagccggttttgtaaggttgagttaggcccccaattt 11316953  T
Q  101 taacatgg 108  Q
     |||||||    
T  11316954 caacatgg 11316961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 2 - 108
Target Start/End: Original strand, 30526850 - 30526956
Alignment:
Q  2 ccacaacggatagatgagacgttttaggaaagtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaatttt 101  Q
    ||||| ||||||||||||||  || | || |||||||||||||| |||   ||||||||||||||| | |||||| | | ||||||||||||| |||||     
T  30526850 ccacatcggatagatgagactcttgatgagagtttataaagagggggaactcctcacttcacaagctggttttgtaaggttgagttaggcccccaatttc 30526949  T
Q  102 aacatgg 108  Q
    |||||||    
T  30526950 aacatgg 30526956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 32 - 108
Target Start/End: Complemental strand, 16877072 - 16876996
Alignment:
Q  32 agtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaattttaacatgg 108  Q
    |||||||||||||||||    |||||| | |||||||| |||||| | ||||||||||||||||||||| |||||||    
T  16877072 agtttataaagaggaggcaatcctcaccttacaagccggttttgtaaggatgagttaggccccaaatttcaacatgg 16876996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 32 - 105
Target Start/End: Complemental strand, 1744904 - 1744831
Alignment:
Q  32 agtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaattttaaca 105  Q
    |||||||||||||||||    |||||| | |||||||| |||||| | ||||||||||||||||||||| ||||    
T  1744904 agtttataaagaggaggcactcctcaccttacaagccggttttgtaaggatgagttaggccccaaatttcaaca 1744831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 32 - 105
Target Start/End: Complemental strand, 16876892 - 16876819
Alignment:
Q  32 agtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaattttaaca 105  Q
    |||||||||||||||||    |||||| | |||||||| |||||| | ||||||||||||||||||||| ||||    
T  16876892 agtttataaagaggaggcaatcctcaccttacaagccggttttgtaaggatgagttaggccccaaatttcaaca 16876819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 32 - 105
Target Start/End: Original strand, 28149835 - 28149908
Alignment:
Q  32 agtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaattttaaca 105  Q
    |||||||||||||||||    |||||| | |||||||| |||||| | ||||||||||||||||||||| ||||    
T  28149835 agtttataaagaggaggcaatcctcaccttacaagccggttttgtaaggatgagttaggccccaaatttcaaca 28149908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 32 - 100
Target Start/End: Original strand, 8144059 - 8144127
Alignment:
Q  32 agtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaattt 100  Q
    |||||||||||||||||    |||||| | |||||||| |||||| | |||||||||||||||||||||    
T  8144059 agtttataaagaggaggcactcctcaccttacaagccggttttgtaaggatgagttaggccccaaattt 8144127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 32 - 108
Target Start/End: Complemental strand, 17147967 - 17147891
Alignment:
Q  32 agtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaattttaacatgg 108  Q
    |||||||||||||||||    |||||| | |||||||| |||||| | ||||||||||||| ||||||| |||||||    
T  17147967 agtttataaagaggaggcaatcctcaccttacaagccggttttgtaaggatgagttaggccacaaatttcaacatgg 17147891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 19712497 - 19712393
Alignment:
Q  1 tccacaacggatagatgagacgttttaggaaagtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaattt 100  Q
    |||||| ||||||||| ||||  || || | ||||||||| |||||||    || ||| | ||||||||||||||| | |||||||||||||||||||||    
T  19712497 tccacatcggatagataagactcttgagaatagtttataaggaggaggcaatccccaccttacaagccgattttgtaaggatgagttaggccccaaattt 19712398  T
Q  101 taaca 105  Q
     ||||    
T  19712397 caaca 19712393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 36 - 100
Target Start/End: Original strand, 24558629 - 24558693
Alignment:
Q  36 tataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaattt 100  Q
    |||||||||||||    |||||| | |||||||| |||||||| |||||||||||||||||||||    
T  24558629 tataaagaggaggcaatcctcaccttacaagccggttttgtgaggatgagttaggccccaaattt 24558693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 99
Target Start/End: Complemental strand, 10418400 - 10418333
Alignment:
Q  32 agtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaatt 99  Q
    |||||||||||||||||    |||||| | |||||||| |||||| | ||||||||||||||||||||    
T  10418400 agtttataaagaggaggcactcctcaccttacaagccggttttgtaaggatgagttaggccccaaatt 10418333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 105
Target Start/End: Complemental strand, 15102708 - 15102613
Alignment:
Q  11 atagatgagacgttttaggaaagtttataaagaggaggagtgcctcacttcac-aagccgattttgtgatgatgagttaggccccaaattttaaca 105  Q
    |||||||||||  || | || |||||||||||||||||    ||||||||||| |||||| |||||| | |||||||||| |||||||||| ||||    
T  15102708 atagatgagactcttgatgagagtttataaagaggaggcactcctcacttcacaaagccggttttgtaaggatgagttagaccccaaatttcaaca 15102613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 2 - 108
Target Start/End: Complemental strand, 11313474 - 11313368
Alignment:
Q  2 ccacaacggatagatgagacgttttaggaaagtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaatttt 101  Q
    ||||| ||||||||| ||||  || || | ||| |||||||||||||    |||||| | |||||||  |||||| | |||||||||||||||||||||     
T  11313474 ccacatcggatagataagactcttgagaagagtatataaagaggaggcaatcctcaccttacaagccagttttgtaaggatgagttaggccccaaatttc 11313375  T
Q  102 aacatgg 108  Q
    |||||||    
T  11313374 aacatgg 11313368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 32 - 106
Target Start/End: Complemental strand, 15101173 - 15101099
Alignment:
Q  32 agtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaattttaacat 106  Q
    |||||||||||||||||    |||||| | |||||||| |||||| | ||||||||||||||| ||||| |||||    
T  15101173 agtttataaagaggaggcaatcctcaccttacaagccggttttgtaaggatgagttaggcccccaatttcaacat 15101099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 3 - 105
Target Start/End: Original strand, 24558801 - 24558903
Alignment:
Q  3 cacaacggatagatgagacgttttaggaaagtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaatttta 102  Q
    |||| ||||||||| ||||  ||||| | ||||||||||||||||     |||||| | |||||| | |||||| | ||||||||||||||||||||| |    
T  24558801 cacatcggatagataagactctttagaagagtttataaagaggagacaatcctcaccttacaagctggttttgtaaggatgagttaggccccaaatttca 24558900  T
Q  103 aca 105  Q
    |||    
T  24558901 aca 24558903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 105
Target Start/End: Complemental strand, 24055171 - 24055098
Alignment:
Q  32 agtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaattttaaca 105  Q
    |||||||||||| ||||    |||||| | |||||||| |||||| | ||||||||||||||||||||| ||||    
T  24055171 agtttataaagacgaggcactcctcaccttacaagccggttttgtaaggatgagttaggccccaaatttcaaca 24055098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 32 - 100
Target Start/End: Complemental strand, 10733500 - 10733432
Alignment:
Q  32 agtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaattt 100  Q
    ||||||||||||||||     |||||| | |||||||| |||||| | |||||||||||||||||||||    
T  10733500 agtttataaagaggagacactcctcaccttacaagccggttttgtaaggatgagttaggccccaaattt 10733432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 32 - 108
Target Start/End: Complemental strand, 19712671 - 19712595
Alignment:
Q  32 agtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaattttaacatgg 108  Q
    |||||||||||||||||    |||||| | |||||| | |||||| | ||||||||||||||||||||  |||||||    
T  19712671 agtttataaagaggaggcaatcctcaccttacaagctggttttgtaaggatgagttaggccccaaattacaacatgg 19712595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 32 - 100
Target Start/End: Complemental strand, 27914388 - 27914320
Alignment:
Q  32 agtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaattt 100  Q
    |||||||||||||||||    ||| || | |||||||| |||||| | |||||||||||||||||||||    
T  27914388 agtttataaagaggaggcactccttaccttacaagccggttttgtaaggatgagttaggccccaaattt 27914320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 8 - 108
Target Start/End: Original strand, 258447 - 258547
Alignment:
Q  8 cggatagatgagacgttttaggaaagtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaattttaacatg 107  Q
    ||||||||||||||  || | || |||| || |||||||||    ||||||||||||||| | |||||||||||||||||||||||||||||| ||||||    
T  258447 cggatagatgagactcttgatgagagttgatgaagaggaggcactcctcacttcacaagctggttttgtgatgatgagttaggccccaaatttcaacatg 258546  T
Q  108 g 108  Q
    |    
T  258547 g 258547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 2 - 105
Target Start/End: Complemental strand, 6813170 - 6813067
Alignment:
Q  2 ccacaacggatagatgagacgttttaggaaagtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaatttt 101  Q
    ||||| |||||||||| |||  || | || |||||||||||||||||    |||||  |||||||||| |||||||| |||||||||||||||||||||     
T  6813170 ccacatcggatagatgggactcttgatgagagtttataaagaggaggcactcctcaactcacaagccggttttgtgaggatgagttaggccccaaatttc 6813071  T
Q  102 aaca 105  Q
    ||||    
T  6813070 aaca 6813067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 8 - 94
Target Start/End: Complemental strand, 6751591 - 6751505
Alignment:
Q  8 cggatagatgagacgttttaggaaagtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggcccc 94  Q
    ||||||||||||||  || | || |||||| ||||||||||    |||||| |||||||||| ||||||||||||||||||||||||    
T  6751591 cggatagatgagactcttgatgagagtttacaaagaggaggcactcctcacctcacaagccggttttgtgatgatgagttaggcccc 6751505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 2 - 96
Target Start/End: Complemental strand, 6751801 - 6751707
Alignment:
Q  2 ccacaacggatagatgagacgttttaggaaagtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaa 96  Q
    ||||| |||||||||||||   || | || |||||| ||||||||||    |||||| |||||||||| ||||||||||||||||||||||||||    
T  6751801 ccacatcggatagatgagattcttgatgagagtttacaaagaggaggcactcctcacctcacaagccggttttgtgatgatgagttaggccccaa 6751707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 10 - 108
Target Start/End: Complemental strand, 13310509 - 13310411
Alignment:
Q  10 gatagatgagacgttttaggaaagtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaattttaacatgg 108  Q
    ||||||||||||  || | || ||||||||||||||||     ||||||||||||| ||| |||||| | ||||||||||||||||||||| |||||||    
T  13310509 gatagatgagactcttgacgagagtttataaagaggagacactcctcacttcacaaaccggttttgtaaggatgagttaggccccaaatttcaacatgg 13310411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 53 - 107
Target Start/End: Complemental strand, 40792853 - 40792799
Alignment:
Q  53 cctcacttcacaagccgattttgtgatgatgagttaggccccaaattttaacatg 107  Q
    |||||| ||||||||||||||||| | |||||||||| |||||||||||||||||    
T  40792853 cctcacctcacaagccgattttgtaaggatgagttagaccccaaattttaacatg 40792799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 32 - 108
Target Start/End: Complemental strand, 6813345 - 6813269
Alignment:
Q  32 agtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaattttaacatgg 108  Q
    |||||||||||||||||    |||||| |||||||||| |||||||| ||  ||||||||||||||||| |||||||    
T  6813345 agtttataaagaggaggcactcctcacctcacaagccggttttgtgaggacaagttaggccccaaatttcaacatgg 6813269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 32 - 96
Target Start/End: Original strand, 29252618 - 29252682
Alignment:
Q  32 agtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaa 96  Q
    |||||||||||||||||    |||||| | |||||||| ||||||||||||||||||||||||||    
T  29252618 agtttataaagaggaggcaatcctcaccttacaagccggttttgtgatgatgagttaggccccaa 29252682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 32 - 100
Target Start/End: Complemental strand, 40703473 - 40703405
Alignment:
Q  32 agtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaattt 100  Q
    |||||||||||||||||    |||||| |||||||||| |||||| | |||||||||||||||||||||    
T  40703473 agtttataaagaggaggcactcctcacctcacaagccggttttgtaaggatgagttaggccccaaattt 40703405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 3 - 105
Target Start/End: Original strand, 6783051 - 6783153
Alignment:
Q  3 cacaacggatagatgagacgttttaggaaagtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaatttta 102  Q
    |||| ||||||||| ||||  || || | |||||||||||||||||    |||||| | |||||||| |||||| | ||||||||||||||||||||| |    
T  6783051 cacatcggatagataagactcttgagaagagtttataaagaggaggcaatcctcaccttacaagccggttttgtaaggatgagttaggccccaaatttca 6783150  T
Q  103 aca 105  Q
    |||    
T  6783151 aca 6783153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 2 - 108
Target Start/End: Original strand, 23396621 - 23396727
Alignment:
Q  2 ccacaacggatagatgagacgttttaggaaagtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaatttt 101  Q
    ||||||||||||||| ||||  || || | ||| |||||||| ||||    |||||| | |||||||| |||||| | |||||||||||||||||||||     
T  23396621 ccacaacggatagataagactcttgagaagagtatataaagatgaggcaatcctcaccttacaagccggttttgtaaggatgagttaggccccaaatttc 23396720  T
Q  102 aacatgg 108  Q
    |||||||    
T  23396721 aacatgg 23396727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 32 - 105
Target Start/End: Complemental strand, 7135305 - 7135232
Alignment:
Q  32 agtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaattttaaca 105  Q
    |||||||||||||||||    |||||| | |||||||| |||||| | |||||||||||||||||||| |||||    
T  7135305 agtttataaagaggaggcactcctcaccttacaagccggttttgtaaagatgagttaggccccaaattctaaca 7135232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 105
Target Start/End: Original strand, 5775894 - 5775997
Alignment:
Q  2 ccacaacggatagatgagacgttttaggaaagtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaatttt 101  Q
    ||||| || |||||||||||  || | || |||||||||||||||||    |||||||| ||||||   |||||||||||||||||| |||| ||||||     
T  5775894 ccacatcgcatagatgagactcttaatgagagtttataaagaggaggcactcctcactttacaagctagttttgtgatgatgagttaagccctaaatttc 5775993  T
Q  102 aaca 105  Q
    ||||    
T  5775994 aaca 5775997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 32 - 98
Target Start/End: Complemental strand, 39808526 - 39808460
Alignment:
Q  32 agtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaat 98  Q
    |||||||||||||||||    |||||| | | |||||| |||||||| |||||||||||||||||||    
T  39808526 agtttataaagaggaggcaatcctcaccttaaaagccggttttgtgaggatgagttaggccccaaat 39808460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 32 - 98
Target Start/End: Complemental strand, 39808659 - 39808593
Alignment:
Q  32 agtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaat 98  Q
    |||||||||||||||||    |||||| | |||||||  |||||||| |||||||||||||||||||    
T  39808659 agtttataaagaggaggcaatcctcaccttacaagccagttttgtgaggatgagttaggccccaaat 39808593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 105
Target Start/End: Complemental strand, 1661253 - 1661180
Alignment:
Q  32 agtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaattttaaca 105  Q
    |||||||||||||||||    |||||| | |||||||| |||||| |  |||||||||||||||||||| ||||    
T  1661253 agtttataaagaggaggcactcctcaccttacaagccggttttgtaagaatgagttaggccccaaatttcaaca 1661180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 53 - 106
Target Start/End: Complemental strand, 1663645 - 1663592
Alignment:
Q  53 cctcacttcacaagccgattttgtgatgatgagttaggccccaaattttaacat 106  Q
    |||||| | |||||||| |||||| | ||||||||||||||||||||| |||||    
T  1663645 cctcaccttacaagccggttttgtaaggatgagttaggccccaaatttcaacat 1663592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 105
Target Start/End: Original strand, 28910074 - 28910147
Alignment:
Q  32 agtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaattttaaca 105  Q
    |||||||||||||||||    |||||| | |||||||| |||||| | |||||||||| |||||||||| ||||    
T  28910074 agtttataaagaggaggcactcctcaccttacaagccggttttgtaaggatgagttagcccccaaatttcaaca 28910147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 32 - 100
Target Start/End: Complemental strand, 257329 - 257261
Alignment:
Q  32 agtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaattt 100  Q
    |||||||||||||||||    |||||| | || ||||| |||||| | |||||||||||||||||||||    
T  257329 agtttataaagaggaggcactcctcaccttactagccggttttgtaaggatgagttaggccccaaattt 257261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 53 - 105
Target Start/End: Original strand, 41670896 - 41670948
Alignment:
Q  53 cctcacttcacaagccgattttgtgatgatgagttaggccccaaattttaaca 105  Q
    |||||| | |||||||| |||||| | ||||||||||||||||||||| ||||    
T  41670896 cctcaccttacaagccggttttgtaaggatgagttaggccccaaatttcaaca 41670948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 32 - 100
Target Start/End: Original strand, 43288574 - 43288642
Alignment:
Q  32 agtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaattt 100  Q
    |||||||||||||||||    |||||| | |||||||| |||||| | ||| |||||||||||||||||    
T  43288574 agtttataaagaggaggcactcctcaccttacaagccggttttgtaaggattagttaggccccaaattt 43288642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 32 - 108
Target Start/End: Original strand, 13843739 - 13843815
Alignment:
Q  32 agtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaattttaacatgg 108  Q
    ||||||||||||||||| |  |||||| | |||||||| |||||| | ||||||||||||||||||||| |||||||    
T  13843739 agtttataaagaggaggcgctcctcaccttacaagccggttttgtaaggatgagttaggccccaaatttcaacatgg 13843815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 32 - 102
Target Start/End: Complemental strand, 37995696 - 37995626
Alignment:
Q  32 agtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaatttta 102  Q
    |||||||||||||||||  | |||||| | |||||||| |||||| | |||||||||||||||||||||||    
T  37995696 agtttataaagaggaggcattcctcaccttacaagccggttttgtaaggatgagttaggccccaaatttta 37995626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 32 - 108
Target Start/End: Complemental strand, 2908831 - 2908755
Alignment:
Q  32 agtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaattttaacatgg 108  Q
    |||||||||||||||||    |||||| | |||||||| |||||| | ||||||||||||||||||||| |||||||    
T  2908831 agtttataaagaggaggcaatcctcaccttacaagccggttttgtaaggatgagttaggccccaaatttcaacatgg 2908755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 32 - 108
Target Start/End: Original strand, 13413626 - 13413702
Alignment:
Q  32 agtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaattttaacatgg 108  Q
    |||||||||||||||||    |||||| | |||||||| |||||| | ||||||||||||||||||||| |||||||    
T  13413626 agtttataaagaggaggcaatcctcaccttacaagccggttttgtaaggatgagttaggccccaaatttcaacatgg 13413702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 53 - 108
Target Start/End: Complemental strand, 20720591 - 20720536
Alignment:
Q  53 cctcacttcacaagccgattttgtgatgatgagttaggccccaaattttaacatgg 108  Q
    |||||||| |||||||| |||||| | |||||||||| ||||||||||||||||||    
T  20720591 cctcactttacaagccggttttgtaaggatgagttagaccccaaattttaacatgg 20720536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 30 - 108
Target Start/End: Complemental strand, 48375 - 48297
Alignment:
Q  30 aaagtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaattttaacatgg 108  Q
    |||||||||||||||||||    |||||| | |||||||| |||||| | ||||||||||||||| ||||| |||||||    
T  48375 aaagtttataaagaggaggcaatcctcaccttacaagccggttttgtaaggatgagttaggcccccaatttcaacatgg 48297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 2 - 108
Target Start/End: Original strand, 3762918 - 3763024
Alignment:
Q  2 ccacaacggatagatgagacgttttaggaaagtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaatttt 101  Q
    ||||| ||||||||| ||||  || || | |||||||||||||||||    | |||| | |||||||| |||||| | |||||||||||||||||||||     
T  3762918 ccacatcggatagataagactcttgagaagagtttataaagaggaggcaatcttcaccttacaagccggttttgtaaggatgagttaggccccaaatttc 3763017  T
Q  102 aacatgg 108  Q
    |||||||    
T  3763018 aacatgg 3763024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 60 - 106
Target Start/End: Original strand, 18107697 - 18107743
Alignment:
Q  60 tcacaagccgattttgtgatgatgagttaggccccaaattttaacat 106  Q
    |||||||||| ||||||||||||||||||| |||||||||| |||||    
T  18107697 tcacaagccggttttgtgatgatgagttagaccccaaatttcaacat 18107743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 32 - 106
Target Start/End: Original strand, 38131806 - 38131880
Alignment:
Q  32 agtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaattttaacat 106  Q
    ||||||||||||||||   | |||||| | |||||||| |||||| | ||||||||||||||||||||| |||||    
T  38131806 agtttataaagaggagacattcctcaccttacaagccggttttgtaaggatgagttaggccccaaatttcaacat 38131880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 32 - 105
Target Start/End: Complemental strand, 1028155 - 1028082
Alignment:
Q  32 agtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaattttaaca 105  Q
    |||||||||||||||||    |||||| | |||| ||| |||||||| ||||||||||||||||||||| ||||    
T  1028155 agtttataaagaggaggcactcctcaccttacaaaccggttttgtgacgatgagttaggccccaaatttcaaca 1028082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 32 - 89
Target Start/End: Complemental strand, 15510566 - 15510509
Alignment:
Q  32 agtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttag 89  Q
    |||||||||||||||||    |||||| |||||||||| |||||||||||||||||||    
T  15510566 agtttataaagaggaggcaatcctcacctcacaagccggttttgtgatgatgagttag 15510509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 2 - 99
Target Start/End: Complemental strand, 35527080 - 35526983
Alignment:
Q  2 ccacaacggatagatgagacgttttaggaaagtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaatt 99  Q
    ||||| ||||||||| ||||  || || | |||||||||||||||||    |||||| | |||||||| |||||| | ||||||||||||||||||||    
T  35527080 ccacatcggatagataagactcttgagaagagtttataaagaggaggcaatcctcaccttacaagccggttttgtaaggatgagttaggccccaaatt 35526983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 32 - 108
Target Start/End: Original strand, 34457138 - 34457214
Alignment:
Q  32 agtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaattttaacatgg 108  Q
    ||||||||||||||| |    |||||| | |||||||| |||||| | ||||||||||||||||||||| |||||||    
T  34457138 agtttataaagaggatgcaatcctcaccttacaagccggttttgtaaggatgagttaggccccaaatttcaacatgg 34457214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 107
Target Start/End: Original strand, 28156072 - 28156147
Alignment:
Q  32 agtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaattttaacatg 107  Q
    |||||||||||||||||    |||||| | |||||||| |||||| | ||||| ||||||||||||||| ||||||    
T  28156072 agtttataaagaggaggcaatcctcaccttacaagccggttttgtaaggatgaattaggccccaaatttcaacatg 28156147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 53 - 100
Target Start/End: Complemental strand, 43490257 - 43490210
Alignment:
Q  53 cctcacttcacaagccgattttgtgatgatgagttaggccccaaattt 100  Q
    |||||| | |||||||| |||||||| |||||||||||||||||||||    
T  43490257 cctcaccttacaagccggttttgtgaggatgagttaggccccaaattt 43490210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 32 - 106
Target Start/End: Complemental strand, 12965308 - 12965234
Alignment:
Q  32 agtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaattttaacat 106  Q
    ||||||||||||||| |    |||||| | |||||||| |||||| | ||||||||||||||||||||| |||||    
T  12965308 agtttataaagaggaagcactcctcaccttacaagccggttttgtaaggatgagttaggccccaaatttcaacat 12965234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 53 - 103
Target Start/End: Complemental strand, 30758355 - 30758305
Alignment:
Q  53 cctcacttcacaagccgattttgtgatgatgagttaggccccaaattttaa 103  Q
    |||||| ||| |||||| |||||| | ||||||||||||||||||||||||    
T  30758355 cctcacctcataagccggttttgtaaggatgagttaggccccaaattttaa 30758305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 2 - 108
Target Start/End: Original strand, 38376743 - 38376849
Alignment:
Q  2 ccacaacggatagatgagacgttttaggaaagtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaatttt 101  Q
    ||||| ||||||||| ||||  || || | ||||||||||||||||     |||||| | |||||||| |||||| | ||||||||||||||||||||      
T  38376743 ccacatcggatagataagactcttgagaagagtttataaagaggagacaatcctcaccttacaagccggttttgtaaggatgagttaggccccaaattac 38376842  T
Q  102 aacatgg 108  Q
    |||||||    
T  38376843 aacatgg 38376849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 62 - 108
Target Start/End: Complemental strand, 40169073 - 40169027
Alignment:
Q  62 acaagccgattttgtgatgatgagttaggccccaaattttaacatgg 108  Q
    |||||||| |||||| | ||||||||||||||||||||| |||||||    
T  40169073 acaagccggttttgtaaggatgagttaggccccaaatttcaacatgg 40169027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 105
Target Start/End: Complemental strand, 873758 - 873685
Alignment:
Q  32 agtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaattttaaca 105  Q
    |||||||| ||||||||  | |||||| | |||||| | |||||| | ||||||||||||||||||||| ||||    
T  873758 agtttatagagaggaggcattcctcaccttacaagcaggttttgtaaggatgagttaggccccaaatttcaaca 873685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 105
Target Start/End: Original strand, 24994111 - 24994184
Alignment:
Q  32 agtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaattttaaca 105  Q
    |||||||||||||||||     ||||| | |||||||| |||||| | ||||||||||||||||||||| ||||    
T  24994111 agtttataaagaggaggcactactcaccttacaagccggttttgtaaggatgagttaggccccaaatttcaaca 24994184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 2 - 106
Target Start/End: Complemental strand, 3015509 - 3015405
Alignment:
Q  2 ccacaacggatagatgagacgttttaggaaagtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaatttt 101  Q
    ||||| ||||||||||||||  || | || |||| ||||||||||||    |||||| |  ||||||| |||||| | | |||||||||||||||||||     
T  3015509 ccacatcggatagatgagactcttgatgagagttcataaagaggaggcaaccctcacattgcaagccggttttgtaaggttgagttaggccccaaatttc 3015410  T
Q  102 aacat 106  Q
    |||||    
T  3015409 aacat 3015405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 32 - 100
Target Start/End: Original strand, 24918203 - 24918271
Alignment:
Q  32 agtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaattt 100  Q
    |||||||||||||||||     ||||| | |||||||| |||||| | |||||||||||||||||||||    
T  24918203 agtttataaagaggaggcactactcaccttacaagccggttttgtaaggatgagttaggccccaaattt 24918271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 32 - 100
Target Start/End: Complemental strand, 28358097 - 28358029
Alignment:
Q  32 agtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaattt 100  Q
    ||||||||||||||||     |||||| | |||||||| |||||| | |||||||||||||||||||||    
T  28358097 agtttataaagaggagacaatcctcaccttacaagccggttttgtaaggatgagttaggccccaaattt 28358029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 32 - 100
Target Start/End: Original strand, 38663289 - 38663357
Alignment:
Q  32 agtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaattt 100  Q
    |||||||||||||||||    | |||| | |||||||| |||||| | |||||||||||||||||||||    
T  38663289 agtttataaagaggaggcactcgtcaccttacaagccggttttgtaaggatgagttaggccccaaattt 38663357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 2 - 108
Target Start/End: Original strand, 43599323 - 43599429
Alignment:
Q  2 ccacaacggatagatgagacgttttaggaaagtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaatttt 101  Q
    ||||| ||||||||| ||||  || || | |||||||||||||||||    |||||| | |||||||| |||||| | |||||||||||||||||||||     
T  43599323 ccacatcggatagataagactcttgagaagagtttataaagaggaggcaatcctcaccttacaagccggttttgtaaggatgagttaggccccaaatttc 43599422  T
Q  102 aacatgg 108  Q
    |||||||    
T  43599423 aacatgg 43599429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 32 - 108
Target Start/End: Complemental strand, 3183973 - 3183897
Alignment:
Q  32 agtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaattttaacatgg 108  Q
    |||||||||||||||||    |||||| | |||||||| |||||| | ||||||||||||||||||||| |||||||    
T  3183973 agtttataaagaggaggcaatcctcaccttacaagccggttttgtaacgatgagttaggccccaaatttcaacatgg 3183897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 32 - 108
Target Start/End: Complemental strand, 10989303 - 10989227
Alignment:
Q  32 agtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaattttaacatgg 108  Q
    |||||||||||||||||    |||||| | |||||||| |||||| | ||||||||||||||||||||| |||||||    
T  10989303 agtttataaagaggaggcaatcctcaccttacaagccggttttgtaaggatgagttaggccccaaatttcaacatgg 10989227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 29 - 100
Target Start/End: Original strand, 5496600 - 5496671
Alignment:
Q  29 gaaagtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaattt 100  Q
    ||||||||||||||||||||    ||| ||||||||||| | ||||||||||||||||||| || |||||||    
T  5496600 gaaagtttataaagaggaggcactccttacttcacaagctggttttgtgatgatgagttagacctcaaattt 5496671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 32 - 106
Target Start/End: Complemental strand, 10989096 - 10989022
Alignment:
Q  32 agtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaattttaacat 106  Q
    |||||||||||||||||    |||||| | |||||||| |||||| | ||||||||||||||||||||| |||||    
T  10989096 agtttataaagaggaggcaatcctcaccttacaagccggttttgtaaggatgagttaggccccaaatttcaacat 10989022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 32 - 106
Target Start/End: Original strand, 18905898 - 18905972
Alignment:
Q  32 agtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaattttaacat 106  Q
    |||||||||||||||||    |||||| | |||||||| |||||| | ||||||||||||||||||||| |||||    
T  18905898 agtttataaagaggaggcactcctcaccttacaagccggttttgtaaggatgagttaggccccaaatttcaacat 18905972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 2 - 100
Target Start/End: Original strand, 36037202 - 36037300
Alignment:
Q  2 ccacaacggatagatgagacgttttaggaaagtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaattt 100  Q
    ||||| ||||||||||||||  || | || ||||||||||||||| |    |||||| |||||||||| |||||| | |||||||||| ||||||||||    
T  36037202 ccacatcggatagatgagactcttgatgagagtttataaagaggatgcactcctcacctcacaagccggttttgtaaggatgagttagaccccaaattt 36037300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 32 - 106
Target Start/End: Original strand, 36997208 - 36997282
Alignment:
Q  32 agtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaattttaacat 106  Q
    |||||||||||||||||    |||||| | |||||||| |||||| | ||||||||||||||||||||| |||||    
T  36997208 agtttataaagaggaggcactcctcaccttacaagccggttttgtaaggatgagttaggccccaaatttcaacat 36997282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 32 - 105
Target Start/End: Complemental strand, 20298578 - 20298505
Alignment:
Q  32 agtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaattttaaca 105  Q
    |||||||||||||||||    |||||| | |||||| | |||||| ||||||||||||||||||||||| ||||    
T  20298578 agtttataaagaggaggcactcctcaccttacaagctggttttgtaatgatgagttaggccccaaatttcaaca 20298505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 32 - 105
Target Start/End: Complemental strand, 21085210 - 21085137
Alignment:
Q  32 agtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaattttaaca 105  Q
    |||||||||||||||||    |||||| | |||||| | |||||| ||||||||||||||||||||||| ||||    
T  21085210 agtttataaagaggaggcactcctcaccttacaagctggttttgtaatgatgagttaggccccaaatttcaaca 21085137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 2 - 107
Target Start/End: Complemental strand, 30176556 - 30176451
Alignment:
Q  2 ccacaacggatagatgagacgttttaggaaagtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaatttt 101  Q
    ||||| |||||||| |||||  || | || |||||||||||||||||    | |||| |||||||||| |||||| | ||||||||||||||| |||||     
T  30176556 ccacatcggatagacgagactcttgatgagagtttataaagaggaggcactcttcacctcacaagccggttttgtaaggatgagttaggccccgaatttc 30176457  T
Q  102 aacatg 107  Q
    ||||||    
T  30176456 aacatg 30176451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 32 - 105
Target Start/End: Original strand, 32931443 - 32931516
Alignment:
Q  32 agtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaattttaaca 105  Q
    |||||||||||||||||    |||||| | |||||||| |||||| | ||||||||||||||||||||| ||||    
T  32931443 agtttataaagaggaggcactcctcaccttacaagccggttttgtaaggatgagttaggccccaaatttcaaca 32931516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 32 - 108
Target Start/End: Complemental strand, 15011091 - 15011015
Alignment:
Q  32 agtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaattttaacatgg 108  Q
    |||||||||||||||||    |||||| | |||||||| |||||| | ||||||||| ||||||||||| |||||||    
T  15011091 agtttataaagaggaggcaatcctcaccttacaagccggttttgtaaggatgagttaagccccaaatttcaacatgg 15011015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 32 - 100
Target Start/End: Original strand, 34248401 - 34248469
Alignment:
Q  32 agtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaattt 100  Q
    |||||||||||||||||    |||||| | |||||||| |||||| | |||||||||||||||||||||    
T  34248401 agtttataaagaggaggcactcctcaccttacaagccggttttgtaaggatgagttaggccccaaattt 34248469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 32 - 108
Target Start/End: Complemental strand, 43984378 - 43984302
Alignment:
Q  32 agtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaattttaacatgg 108  Q
    |||||||||||||||||    ||||||   |||||||| |||||| | ||||||||||||||||||||| |||||||    
T  43984378 agtttataaagaggaggcactcctcaccatacaagccggttttgtaaggatgagttaggccccaaatttcaacatgg 43984302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 3 - 106
Target Start/End: Complemental strand, 16454726 - 16454623
Alignment:
Q  3 cacaacggatagatgagacgttttaggaaagtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaatttta 102  Q
    |||| ||||||||| ||||  || || | ||| |||||||||||||    |||||| | |||||||| |||||| | ||||||||||||||||||||| |    
T  16454726 cacatcggatagataagactcttaagaagagtatataaagaggaggcaatcctcaccttacaagccggttttgtaaggatgagttaggccccaaatttca 16454627  T
Q  103 acat 106  Q
    ||||    
T  16454626 acat 16454623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 99
Target Start/End: Original strand, 34248119 - 34248186
Alignment:
Q  32 agtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaatt 99  Q
    |||||||||||||||||    |||||| | |||||||| |||||| | ||||||||||||||||||||    
T  34248119 agtttataaagaggaggcactcctcaccttacaagccggttttgtaaggatgagttaggccccaaatt 34248186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 2 - 108
Target Start/End: Original strand, 8559593 - 8559699
Alignment:
Q  2 ccacaacggatagatgagacgttttaggaaagtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaatttt 101  Q
    ||||| ||||||||| ||||  || || | ||| |||||||||||||    |||||| | |||||||| |||||| | ||||||||||||||||||||      
T  8559593 ccacatcggatagataagactcttgagaagagtatataaagaggaggcaatcctcaccttacaagccggttttgtaaggatgagttaggccccaaattac 8559692  T
Q  102 aacatgg 108  Q
    |||||||    
T  8559693 aacatgg 8559699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 99
Target Start/End: Original strand, 21653844 - 21653913
Alignment:
Q  30 aaagtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaatt 99  Q
    |||||||||| ||||||||    |||||| | |||||||| |||||| | ||||||||||||||||||||    
T  21653844 aaagtttatacagaggaggcactcctcaccttacaagccggttttgtaaggatgagttaggccccaaatt 21653913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 105
Target Start/End: Complemental strand, 40902455 - 40902382
Alignment:
Q  32 agtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaattttaaca 105  Q
    |||||||||||||||||    |||||| | |||||||| |||||| | ||| ||||||||||||||||| ||||    
T  40902455 agtttataaagaggaggcaatcctcaccttacaagccggttttgtaaggataagttaggccccaaatttcaaca 40902382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 60 - 100
Target Start/End: Original strand, 7729741 - 7729781
Alignment:
Q  60 tcacaagccgattttgtgatgatgagttaggccccaaattt 100  Q
    |||||||||| |||||| | |||||||||||||||||||||    
T  7729741 tcacaagccggttttgtaaggatgagttaggccccaaattt 7729781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 34 - 106
Target Start/End: Complemental strand, 15010881 - 15010809
Alignment:
Q  34 tttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaattttaacat 106  Q
    |||||||||||||||    |||||| | |||||||| |||| | | ||||||||||||||||||||| |||||    
T  15010881 tttataaagaggaggcaatcctcaccttacaagccggttttataaggatgagttaggccccaaatttcaacat 15010809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 32 - 96
Target Start/End: Original strand, 42228813 - 42228877
Alignment:
Q  32 agtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaa 96  Q
    |||||||||||||||||    |||||| | ||||||||||||||| | |||||||||| ||||||    
T  42228813 agtttataaagaggaggcaatcctcaccttacaagccgattttgtaaggatgagttagaccccaa 42228877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0434 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: scaffold0434
Description:

Target: scaffold0434; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 32 - 108
Target Start/End: Original strand, 13348 - 13424
Alignment:
Q  32 agtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaattttaacatgg 108  Q
    |||||||||||||||||    |||||| | |||||||| |||||||| ||||||||||||||| ||||| |||||||    
T  13348 agtttataaagaggaggcaatcctcaccttacaagccggttttgtgaggatgagttaggccccgaatttcaacatgg 13424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0434; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 105
Target Start/End: Original strand, 13555 - 13628
Alignment:
Q  32 agtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaattttaaca 105  Q
    |||||||||||||||||    |||||| | |||||||| ||||| || ||||||||||||||| ||||| ||||    
T  13555 agtttataaagaggaggcaatcctcaccttacaagccggttttgcgaggatgagttaggccccgaatttcaaca 13628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 32 - 108
Target Start/End: Complemental strand, 21214263 - 21214187
Alignment:
Q  32 agtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaattttaacatgg 108  Q
    |||||||||||||||||    |||||| | |||||||| |||||| | ||||||||||||||||||||| |||||||    
T  21214263 agtttataaagaggaggcactcctcaccttacaagccggttttgtaaggatgagttaggccccaaatttcaacatgg 21214187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 53 - 108
Target Start/End: Complemental strand, 93503 - 93448
Alignment:
Q  53 cctcacttcacaagccgattttgtgatgatgagttaggccccaaattttaacatgg 108  Q
    |||||| |||||||||| |||||||| ||||||||| ||||||||||| |||||||    
T  93503 cctcacctcacaagccggttttgtgaggatgagttatgccccaaatttcaacatgg 93448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 53 - 108
Target Start/End: Complemental strand, 93776 - 93721
Alignment:
Q  53 cctcacttcacaagccgattttgtgatgatgagttaggccccaaattttaacatgg 108  Q
    |||||| |||||||||| |||||||| ||||||||||||| ||||||| |||||||    
T  93776 cctcacctcacaagccggttttgtgaggatgagttaggcctcaaatttcaacatgg 93721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 2 - 103
Target Start/End: Original strand, 17727416 - 17727517
Alignment:
Q  2 ccacaacggatagatgagacgttttaggaaagtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaatttt 101  Q
    ||||| ||||||||| ||||  || || | ||||||||||||| |||    |||||| | |||||||| |||||| | ||||||||||||||||||||||    
T  17727416 ccacatcggatagataagactcttgagaagagtttataaagagaaggcaatcctcaccttacaagccggttttgtaaggatgagttaggccccaaatttt 17727515  T
Q  102 aa 103  Q
    ||    
T  17727516 aa 17727517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 32 - 105
Target Start/End: Complemental strand, 42768396 - 42768323
Alignment:
Q  32 agtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaattttaaca 105  Q
    |||||||||||||||||    |||||| | |||||||| |||||| | ||||||||||||||||||||| ||||    
T  42768396 agtttataaagaggaggcactcctcaccttacaagccggttttgtaaggatgagttaggccccaaatttcaaca 42768323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 32 - 105
Target Start/End: Original strand, 43195826 - 43195899
Alignment:
Q  32 agtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaattttaaca 105  Q
    |||||||||||||||||    |||||| | |||||||| |||||| | ||||||||||||||||||||| ||||    
T  43195826 agtttataaagaggaggcactcctcaccttacaagccggttttgtaaggatgagttaggccccaaatttcaaca 43195899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 32 - 108
Target Start/End: Complemental strand, 3976533 - 3976457
Alignment:
Q  32 agtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaattttaacatgg 108  Q
    |||||||||||||||||    |||||| | |||||||| |||||| | ||||||||||||||||||||  |||||||    
T  3976533 agtttataaagaggaggcactcctcaccttacaagccggttttgtaaggatgagttaggccccaaattacaacatgg 3976457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 105
Target Start/End: Complemental strand, 883693 - 883590
Alignment:
Q  2 ccacaacggatagatgagacgttttaggaaagtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaatttt 101  Q
    ||||| ||||||||| ||||  || || | |||||||||||||||||    |||||| | |||||||| |||||| | ||||||||| ||||| ||||||    
T  883693 ccacatcggatagataagactcttgagaagagtttataaagaggaggcaatcctcaccttacaagccggttttgtaaggatgagttatgcccccaatttt 883594  T
Q  102 aaca 105  Q
    ||||    
T  883593 aaca 883590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 53 - 108
Target Start/End: Original strand, 883913 - 883968
Alignment:
Q  53 cctcacttcacaagccgattttgtgatgatgagttaggccccaaattttaacatgg 108  Q
    |||||| | |||||||| |||||| | ||||||||||||||| |||||||||||||    
T  883913 cctcaccttacaagccggttttgtaaggatgagttaggcccccaattttaacatgg 883968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 53 - 96
Target Start/End: Complemental strand, 6148963 - 6148920
Alignment:
Q  53 cctcacttcacaagccgattttgtgatgatgagttaggccccaa 96  Q
    ||||||||||||||| ||||||||||| |||||||| |||||||    
T  6148963 cctcacttcacaagctgattttgtgataatgagttaagccccaa 6148920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 53 - 108
Target Start/End: Complemental strand, 37812554 - 37812499
Alignment:
Q  53 cctcacttcacaagccgattttgtgatgatgagttaggccccaaattttaacatgg 108  Q
    |||||| ||||||| ||||||||| | ||||||||||||||||||||  |||||||    
T  37812554 cctcacctcacaagtcgattttgtaaggatgagttaggccccaaattacaacatgg 37812499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 2 - 108
Target Start/End: Original strand, 12431910 - 12432016
Alignment:
Q  2 ccacaacggatagatgagacgttttaggaaagtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaatttt 101  Q
    ||||| ||||||||| ||||  || || | ||||||||||||||||     |||||| | |||||||| |||||| | |||||| ||||||||||||||     
T  12431910 ccacatcggatagataagactcttgagaagagtttataaagaggagacaatcctcaccttacaagccggttttgtaaggatgagctaggccccaaatttc 12432009  T
Q  102 aacatgg 108  Q
    |||||||    
T  12432010 aacatgg 12432016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 105
Target Start/End: Complemental strand, 20999051 - 20998978
Alignment:
Q  32 agtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaattttaaca 105  Q
    |||||||||||||||||    |||||| | |||||||| |||||| | ||||||||||||||| ||||| ||||    
T  20999051 agtttataaagaggaggcaatcctcaccttacaagccggttttgtaaggatgagttaggcccccaatttcaaca 20998978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 105
Target Start/End: Original strand, 23054368 - 23054441
Alignment:
Q  32 agtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaattttaaca 105  Q
    |||||||||||||||||    |||||| | ||||| || |||||| | ||||||||||||||||||||| ||||    
T  23054368 agtttataaagaggaggcactcctcaccttacaagacggttttgtaaggatgagttaggccccaaatttcaaca 23054441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 105
Target Start/End: Original strand, 31761373 - 31761446
Alignment:
Q  32 agtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaattttaaca 105  Q
    |||||||| ||||||||    |||||| | ||||||||||||||| | ||||||||| ||||||||||| ||||    
T  31761373 agtttatatagaggaggcaatcctcaccttacaagccgattttgtaaggatgagttaagccccaaatttcaaca 31761446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 105
Target Start/End: Complemental strand, 33985829 - 33985760
Alignment:
Q  36 tataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaattttaaca 105  Q
    |||||||||||||    |||||| | |||||||| |||||| | ||||||||||||||||||||| ||||    
T  33985829 tataaagaggaggcaatcctcaccttacaagccggttttgtaaggatgagttaggccccaaatttcaaca 33985760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 32 - 108
Target Start/End: Complemental strand, 3977065 - 3976989
Alignment:
Q  32 agtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaattttaacatgg 108  Q
    |||||||||||||||||    |||||  | |||||||| |||||| | ||||||||||||||||||||  |||||||    
T  3977065 agtttataaagaggaggcactcctcaaattacaagccggttttgtaaggatgagttaggccccaaattacaacatgg 3976989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 32 - 100
Target Start/End: Original strand, 11969094 - 11969162
Alignment:
Q  32 agtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaattt 100  Q
    |||||||||||||||||    |||||| | |||||||| |||||| | |||||||||||||| ||||||    
T  11969094 agtttataaagaggaggcactcctcaccttacaagccggttttgtaaggatgagttaggcccaaaattt 11969162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 52 - 108
Target Start/End: Original strand, 25082681 - 25082737
Alignment:
Q  52 gcctcacttcacaagccgattttgtgatgatgagttaggccccaaattttaacatgg 108  Q
    ||||||| |||||||||| |||| | | ||||| ||||||||||||||| |||||||    
T  25082681 gcctcacctcacaagccgtttttctaaggatgaattaggccccaaatttcaacatgg 25082737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 80 - 108
Target Start/End: Complemental strand, 29695559 - 29695531
Alignment:
Q  80 gatgagttaggccccaaattttaacatgg 108  Q
    |||||||||||||||||||||||||||||    
T  29695559 gatgagttaggccccaaattttaacatgg 29695531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 62 - 98
Target Start/End: Original strand, 32667049 - 32667085
Alignment:
Q  62 acaagccgattttgtgatgatgagttaggccccaaat 98  Q
    |||||||| |||||| |||||||||||||||||||||    
T  32667049 acaagccggttttgtaatgatgagttaggccccaaat 32667085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0989 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0989
Description:

Target: scaffold0989; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 32 - 105
Target Start/End: Complemental strand, 3009 - 2936
Alignment:
Q  32 agtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaattttaaca 105  Q
    |||||||||||||||||    |||||||| |||||| | |||||| | ||||||||||||||||||||| ||||    
T  3009 agtttataaagaggaggcaatcctcactttacaagctggttttgtaaggatgagttaggccccaaatttcaaca 2936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 2 - 99
Target Start/End: Original strand, 76864 - 76961
Alignment:
Q  2 ccacaacggatagatgagacgttttaggaaagtttataaagaggaggagtgcctcacttcacaagccgattttgtgatgatgagttaggccccaaatt 99  Q
    ||||| ||||||||| ||||  || || | |||||||||||||||||    |||||| | |||||||| |||||| | ||||||||||||||||||||    
T  76864 ccacatcggatagataagactcttgagaagagtttataaagaggaggcaatcctcaccttacaagccggttttgtaaagatgagttaggccccaaatt 76961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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