View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5316_low_43 (Length: 205)
Name: NF5316_low_43
Description: NF5316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5316_low_43 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 2 - 205
Target Start/End: Complemental strand, 26730580 - 26730379
Alignment:
| Q |
2 |
catcaccacatgtcacattgtattcagcccccataggtttctatagcatccttgataatttgttctgctggagtaaactctaaacctatatatataatta |
101 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
26730580 |
catcaccacatgtcacattgtattcagcccccataggtttctatagcatccttgataatttgttctgctggagtaaactctaaacctatatata--atta |
26730483 |
T |
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| Q |
102 |
agcatacaatccatttattcatactatatccattccataaacaaacagtcaagggtttggacttcacagtgctaatcaatctacattattctacaacagc |
201 |
Q |
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| T |
26730482 |
agcatacaatccatttattcatactatatccattccataaacaaacagtcaagggtttggacttcacagtgctaatcaatctacattattctacaacagc |
26730383 |
T |
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| Q |
202 |
aaaa |
205 |
Q |
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|||| |
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| T |
26730382 |
aaaa |
26730379 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 43
Target Start/End: Complemental strand, 26674484 - 26674443
Alignment:
| Q |
2 |
catcaccacatgtcacattgtattcagcccccataggtttct |
43 |
Q |
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| T |
26674484 |
catcatcacatgtcacattgtattcagcccccataggtttct |
26674443 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 89
Target Start/End: Complemental strand, 26674403 - 26674361
Alignment:
| Q |
47 |
gcatccttgataatttgttctgctggagtaaactctaaaccta |
89 |
Q |
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| T |
26674403 |
gcatccttgataatttcttctgctggagtgaactctaacccta |
26674361 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.00000000007; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 136 - 194
Target Start/End: Complemental strand, 44614807 - 44614749
Alignment:
| Q |
136 |
ccataaacaaacagtcaagggtttggacttcacagtgctaatcaatctacattattcta |
194 |
Q |
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| T |
44614807 |
ccataaccaaacagtcaagggtgtgaactccacactgctaaccaatctacattattcta |
44614749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 136 - 194
Target Start/End: Original strand, 44789907 - 44789965
Alignment:
| Q |
136 |
ccataaacaaacagtcaagggtttggacttcacagtgctaatcaatctacattattcta |
194 |
Q |
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|||||| ||||||||||||||| || ||| |||| |||||| ||||||||||||||||| |
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| T |
44789907 |
ccataaccaaacagtcaagggtgtgaactccacactgctaaccaatctacattattcta |
44789965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 136 - 194
Target Start/End: Original strand, 44793762 - 44793820
Alignment:
| Q |
136 |
ccataaacaaacagtcaagggtttggacttcacagtgctaatcaatctacattattcta |
194 |
Q |
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|||||| ||||||||||||||| || ||| |||| |||||| ||||||||||||||||| |
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| T |
44793762 |
ccataaccaaacagtcaagggtgtgaactccacactgctaaccaatctacattattcta |
44793820 |
T |
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