View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5316_low_5 (Length: 534)
Name: NF5316_low_5
Description: NF5316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5316_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 285; Significance: 1e-159; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 216 - 528
Target Start/End: Original strand, 31457594 - 31457906
Alignment:
| Q |
216 |
gagtccccccacaaggatacgaaaagcaaacttagtttattcatagtgataataataatgacatatataaatcacattcaccaccacacagttacataat |
315 |
Q |
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| T |
31457594 |
gagtcccaccacaaggataacaaaagcaaacttagtttattcatagtgataataataatgacatatataaatcacattcaccaccacacagttacatatt |
31457693 |
T |
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| Q |
316 |
tatttattaatgagaaaattaagaggctagttaaaaacaagtaatagctggatgaattatagcactacttgttggccttgtcaacagaatgaagaccact |
415 |
Q |
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| T |
31457694 |
aatttattaatgagaaaattaagaggctagttaaaaacaagtaatagctggatgaattatagcactacttgttggccttgtcagcagaatgaagaccact |
31457793 |
T |
|
| Q |
416 |
aaaatagccttgagggttgttttcaaatgcaccacgagatatgtatgatccaccacctcccggtgctttcattgaatccccaccaccactgccaccggtg |
515 |
Q |
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| T |
31457794 |
aaaatagccttgagggttgttttcaaatgcaccacgagatatgtatgatccaccacctccaggtgctttcattgaatccccaccaccactgccaccggtg |
31457893 |
T |
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| Q |
516 |
gaccctttgcttc |
528 |
Q |
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| T |
31457894 |
gaccctttgcttc |
31457906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 278 - 528
Target Start/End: Original strand, 49085607 - 49085855
Alignment:
| Q |
278 |
atatataaatcacattcaccaccacacagttacataattatttattaatgagaaaattaagaggctagttaaaaacaagtaatagctggatgaattatag |
377 |
Q |
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|||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| |
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| T |
49085607 |
atatataaatcacattagccaccacacagttacatatttatttattaatgagaaaattaagaggccagttaaaaacaagtaatagctggatgaa--atag |
49085704 |
T |
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| Q |
378 |
cactacttgttggccttgtcaacagaatgaagaccactaaaatagccttgagggttgttttcaaatgcaccacgagatatgtatgatccaccacctcccg |
477 |
Q |
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||||||||||||||||||||| ||| ||||||||||| |||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
49085705 |
cactacttgttggccttgtcagcagcatgaagaccaccaaaatagccttgtgggttgctttcaaatgcaccacgagatatgtatgatccaccacctcccg |
49085804 |
T |
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| Q |
478 |
gtgctttcattgaatccccaccaccactgccaccggtggaccctttgcttc |
528 |
Q |
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| T |
49085805 |
gtgctttcattgaatctccaccaccactgccaccggtggaccctttgcttc |
49085855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 96 - 156
Target Start/End: Original strand, 49085510 - 49085571
Alignment:
| Q |
96 |
atctattcagtttttaatta-atattgcgtgttttaattttgtatgtgtaaaataacgagag |
156 |
Q |
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| T |
49085510 |
atctattcagtttttaataatatatagcgtgttttagttttgtatgtgtaaaataacgagag |
49085571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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