View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5316_low_7 (Length: 515)
Name: NF5316_low_7
Description: NF5316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5316_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 188 - 496
Target Start/End: Complemental strand, 45757388 - 45757078
Alignment:
| Q |
188 |
accaaaggaagcctttggaaacattcgtaagttacaaggaaattgagtttgggaatcaatcactttccacgaaataaaatgtgaccgtataaatcttcca |
287 |
Q |
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| T |
45757388 |
accaaaggaagcctttggaaacattcgtaagttacaaggaaattgagtttgggaatcaatcactttccacgaaataaaatgcgaccgtataaatctccca |
45757289 |
T |
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| Q |
288 |
ctatag------------taaggtaggaagcatcattctatgtgcatgtgcatgtgcatgcgcccaaaacataatggagacatattatattatgcatgtt |
375 |
Q |
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| T |
45757288 |
ctatagcttatattgatgtaaggtaggaagcatcattctatgtgcatgtgcatg------cgcccaaaacataatggaaacatattatattatgcatgtt |
45757195 |
T |
|
| Q |
376 |
aattaagatgttctatattcactagtagtaataatctactgtcaacaacttatcaaggtggtcaatacaacaatttgccgtataaaaatccattggaact |
475 |
Q |
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| T |
45757194 |
aa----gatgttctatattcactagtagtagtaatctactgtcaacaacttatcaaggtggtcaatacaacaatttgccgtataaaaatccattggaact |
45757099 |
T |
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| Q |
476 |
ctaattagtggtatgctacca |
496 |
Q |
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| T |
45757098 |
ctaattagtggtatgttacca |
45757078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 45757576 - 45757464
Alignment:
| Q |
1 |
cttggaatcctaacctatagtgtgagtttgtggtttctttaaggggcaaaaacataccgtacgttgtgcattttcgtattcttaccaacccgagagtact |
100 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
45757576 |
cttggaatcctaacctacagtgtgagtttgtggtttctttaaggggcaaaaaaataccgtacgttgtgcattttcgtattcttaccaactcgagagtact |
45757477 |
T |
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| Q |
101 |
tcaaatcttaaat |
113 |
Q |
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| T |
45757476 |
tcaaatcttaaat |
45757464 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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