View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5317_high_2 (Length: 382)
Name: NF5317_high_2
Description: NF5317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5317_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 19 - 364
Target Start/End: Original strand, 8202056 - 8202401
Alignment:
| Q |
19 |
gaatcgtcatcacttagcaatgattacacttgtaaattcagttattcggttattccttttagtctttaagctaatatgctgtcatgttgtgtttttgttg |
118 |
Q |
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| T |
8202056 |
gaatcgtcatcacttagcaatgattacacttgtaaattcagttattcggttattccttttagtctttaagctaatatgctgtcatgttgtgtttttgttg |
8202155 |
T |
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| Q |
119 |
cattctgtttcacagtttcatgtgatcaaaactcggactgatacctgtaggaaaaaggtcagcaatatttttaatctatgatccagttttttcttgctct |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8202156 |
cattctgtttcacagtttcatgtgatcaaaactcggactgatacctgtaggaaaaaggtcagcaatatttttaatctatgatccagttttttcttgctct |
8202255 |
T |
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| Q |
219 |
tgtgaatttgataaaccaatgttctattaaaactttatctaaataatatgcaggttagaagcttggagcagatgaatggaaatctcttgcttgaacttgt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8202256 |
tgtgaatttgataaaccaatgttctattaaaactttatctaaataatatgcaggttagaagcttggagcagatgaatggaaatctcttgcttgaacttgt |
8202355 |
T |
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| Q |
319 |
aagaacattatttctttcaagttaatgttatatactactagaaaaa |
364 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
8202356 |
aagaacattattcctttcaagttaatgttatatactactagaaaaa |
8202401 |
T |
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