View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5317_low_3 (Length: 376)
Name: NF5317_low_3
Description: NF5317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5317_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 300; Significance: 1e-168; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 18 - 360
Target Start/End: Original strand, 1352779 - 1353115
Alignment:
| Q |
18 |
gatacaacttgtcagtgaagagcagcaacataatgaagaagtcaaagaaggattttcttaatagcttggaggtcaaaaataacacagcaatgaaaaggag |
117 |
Q |
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| T |
1352779 |
gatacaacttgtcagtgaagagcagcaacataatgaagaagtcaaagaaggattttcttaatagttttgaggtcaaaaatatcacagcaatgaaaaggag |
1352878 |
T |
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| Q |
118 |
aggaattggttcaacttccaaatatctcactttttaagaaggaaattttagggtcaggcaatgaagataacaatgctatgtatcattatttgctgctttt |
217 |
Q |
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| T |
1352879 |
aggaattggttcaacttccaaatatctcactttttaagaaggaaattttaggggcaggcaatgaggataacaatgctatgtatcattatttgctgctttt |
1352978 |
T |
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| Q |
218 |
agataatatgctattgagtttattttgttggctacttttggctttggctttactatgtattttcattgaaactcttattttgataagtaattgttaatat |
317 |
Q |
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| T |
1352979 |
agataatatgctattgagtttattttgttggctact------tttggctttactatgtattttcattgaaactcttattttgataagtaattgttaatat |
1353072 |
T |
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| Q |
318 |
gattcattgaaaaaatacactaaatattgaaaagagagaatac |
360 |
Q |
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| T |
1353073 |
gattcattgaaaaaatacactaaatattgaaaagagagaatac |
1353115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 18 - 211
Target Start/End: Complemental strand, 2040865 - 2040672
Alignment:
| Q |
18 |
gatacaacttgtcagtgaagagcagcaacataatgaagaagtcaaagaaggattttcttaatagcttggaggtcaaaaataacacagcaatgaaaaggag |
117 |
Q |
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| T |
2040865 |
gatacaacttgtcagtgaagagcagcaacataatgaagaagtcaaagaaggattttcttaatagcttggaggtcaaaaataacacagcaatgaaaaggag |
2040766 |
T |
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| Q |
118 |
aggaattggttcaacttccaaatatctcactttttaagaaggaaattttagggtcaggcaatgaagataacaatgctatgtatcattatttgct |
211 |
Q |
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| T |
2040765 |
aggaattggttcaacttccaaatatctcactttttaagaacgaaattttagggtcaggcaatgaagataacaatgctatgtatcattatttgct |
2040672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 120 - 209
Target Start/End: Original strand, 1357941 - 1358029
Alignment:
| Q |
120 |
gaattggttcaacttccaaatatctcactttttaagaaggaaattttagggtcaggcaatgaagataacaatgctatgtatcattatttg |
209 |
Q |
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| T |
1357941 |
gaattgtttcaacttccaagtatctcactttttaaggat-attttttaggggcaggcaatgaggataacaatgctatgtatcattatttg |
1358029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 56 - 111
Target Start/End: Complemental strand, 10043832 - 10043776
Alignment:
| Q |
56 |
aagtcaaagaaggattttcttaatag-cttggaggtcaaaaataacacagcaatgaa |
111 |
Q |
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| T |
10043832 |
aagtcaaagaaagattttcttaatagtttttgaggtaaaaaatatcacagcaatgaa |
10043776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 32 - 111
Target Start/End: Original strand, 36717833 - 36717912
Alignment:
| Q |
32 |
gtgaagagcagcaacataatgaagaagtcaaagaaggattttcttaatagcttggaggtcaaaaataacacagcaatgaa |
111 |
Q |
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| T |
36717833 |
gtgaagagcagcaacataatgaagaagtcaaagaaagattttcttaatagttttgaggtaaaaaatatcacagcaatgaa |
36717912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 119 - 156
Target Start/End: Original strand, 36717977 - 36718014
Alignment:
| Q |
119 |
ggaattggttcaacttccaaatatctcactttttaaga |
156 |
Q |
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| T |
36717977 |
ggaattggttcaacttccaaatatctcactttttaaga |
36718014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 32 - 79
Target Start/End: Complemental strand, 24619780 - 24619733
Alignment:
| Q |
32 |
gtgaagagcagcaacataatgaagaagtcaaagaaggattttcttaat |
79 |
Q |
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| T |
24619780 |
gtgaagagcagcaacataatgaagaaatcaaagaaatattttcttaat |
24619733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 211
Target Start/End: Complemental strand, 18178806 - 18178758
Alignment:
| Q |
163 |
ttttagggtcaggcaatgaagataacaatgctatgtatcattatttgct |
211 |
Q |
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| T |
18178806 |
ttttaggggcagacaatgaggatagcaatgctatgtatcattatttgct |
18178758 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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