View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5318-Insertion-1 (Length: 360)

Name: NF5318-Insertion-1
Description: NF5318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5318-Insertion-1
NF5318-Insertion-1
[»] chr8 (5 HSPs)
chr8 (47-360)||(22897162-22897475)
chr8 (60-360)||(36306569-36306869)
chr8 (208-251)||(13812286-13812329)
chr8 (8-55)||(22897479-22897526)
chr8 (165-274)||(23477526-23477635)
[»] chr1 (4 HSPs)
chr1 (47-360)||(28384412-28384725)
chr1 (60-349)||(38489411-38489690)
chr1 (205-344)||(26334337-26334474)
chr1 (208-272)||(45600290-45600354)
[»] chr3 (5 HSPs)
chr3 (60-360)||(16878507-16878807)
chr3 (145-274)||(13762867-13762998)
chr3 (208-274)||(14484912-14484978)
chr3 (211-280)||(42625445-42625514)
chr3 (208-274)||(12527255-12527321)
[»] chr7 (2 HSPs)
chr7 (205-344)||(42510830-42510969)
chr7 (208-272)||(8862864-8862928)
[»] chr2 (3 HSPs)
chr2 (65-356)||(20608600-20608891)
chr2 (205-270)||(5380238-5380303)
chr2 (208-272)||(30847325-30847389)
[»] chr4 (1 HSPs)
chr4 (208-272)||(33479803-33479867)


Alignment Details
Target: chr8 (Bit Score: 270; Significance: 1e-151; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 47 - 360
Target Start/End: Complemental strand, 22897475 - 22897162
Alignment:
Q  47 gctgcacagacacagcagactgctgcacagacgcatcataatgcagctgctgattgctcgtctgctgcaggtcagctggcctcggaacattggcctcctg 146  Q
    ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| | ||||||||||||||||||||||| |||||||    
T  22897475 gctgcacagacacagcagactgctgcacagacgcagcagaatgcagctgctgattgctcgtctgctactggtcagctggcctcggaacattgacctcctg 22897376  T
Q  147 ccaatcatccactaactgtcgagctctgtctacaacttgcgcgctattctccgtaacctcttcccaaattttgagatttcgatgcttccataaactccaa 246  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  22897375 ccaatcatccactaactgtcgagctctgtctacaacttgcgcgctattctccgtaacctcttcccaaattttgagattccgatgcttccataaactccaa 22897276  T
Q  247 caaatagcagcaaaacgttgttgaatatacatagacgagttttggagtaaatagaaaattgttttgatggaagaatctgaattcatggccgcattttgca 346  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| ||||| |||||||| ||||||||||||||||||||||    
T  22897275 caaatagcagcaaaacgttgttgaatatccatagacgagttttggagtaaataaaaaattgtgttgatagaagaatccgaattcatggccgcattttgca 22897176  T
Q  347 catcctgccacata 360  Q
    ||||||||||||||    
T  22897175 catcctgccacata 22897162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 60 - 360
Target Start/End: Original strand, 36306569 - 36306869
Alignment:
Q  60 agcagactgctgcacagacgcatcataatgcagctgctgattgctcgtctgctgcaggtcagctggcctcggaacattggcctcctgccaatcatccact 159  Q
    ||||||||||| |||||||||| || ||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||||||||||    
T  36306569 agcagactgctacacagacgcagcagaatgcagttgctgattgctcgtctgctgcaggtcagctgccctcggaacattggcatgctgccaatcatccact 36306668  T
Q  160 aactgtcgagctctgtctacaacttgcgcgctattctccgtaacctcttcccaaattttgagatttcgatgcttccataaactccaacaaatagcagcaa 259  Q
    |||| |||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||    
T  36306669 aactatcgagctctgtcaacaacttgcgcgctattctccgttacctcttcccaaattttgagattccgatgcttccataaactccaacaaatagcagaaa 36306768  T
Q  260 aacgttgttgaatatacatagacgagttttggagtaaatagaaaattgttttgatggaagaatctgaattcatggccgcattttgcacatcctgccacat 359  Q
    ||||||||||||||| ||||||||||||||||||||||||||||| | | ||||| ||||| ||||||||||| ||||||||||||||||||||||||||    
T  36306769 aacgttgttgaatatccatagacgagttttggagtaaatagaaaactttgttgatagaagagtctgaattcattgccgcattttgcacatcctgccacat 36306868  T
Q  360 a 360  Q
    |    
T  36306869 a 36306869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 208 - 251
Target Start/End: Original strand, 13812286 - 13812329
Alignment:
Q  208 tcccaaattttgagatttcgatgcttccataaactccaacaaat 251  Q
    |||||||||||||| || ||||||||||||||||||||||||||    
T  13812286 tcccaaattttgaggttccgatgcttccataaactccaacaaat 13812329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 55
Target Start/End: Complemental strand, 22897526 - 22897479
Alignment:
Q  8 gccactgcaggataggaggtcctgtcaaagacctttgctgctgcacag 55  Q
    |||||||| |||||||||||||||| |||| |||||||||||||||||    
T  22897526 gccactgccggataggaggtcctgtaaaaggcctttgctgctgcacag 22897479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 274
Target Start/End: Original strand, 23477526 - 23477635
Alignment:
Q  165 tcgagctctgtctacaacttgcgcgctattctccgtaacctcttcccaaattttgagatttcgatgcttccataaactccaacaaatagcagcaaaacgt 264  Q
    |||||||||||| |||||||| || || |||||   ||| |  ||||||||||| || || || |||||||| |||||||| ||| ||||| |||| |||    
T  23477526 tcgagctctgtcaacaacttgtgcactgttctcatcaacgttctcccaaattttaaggttccggtgcttccacaaactccagcaagtagcaacaaagcgt 23477625  T
Q  265 tgttgaatat 274  Q
    |||| |||||    
T  23477626 tgtttaatat 23477635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 47 - 360
Target Start/End: Complemental strand, 28384725 - 28384412
Alignment:
Q  47 gctgcacagacacagcagactgctgcacagacgcatcataatgcagctgctgattgctcgtctgctgcaggtcagctggcctcggaacattggcctcctg 146  Q
    ||||||||||||||||||| |||||  |||||||| || ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  28384725 gctgcacagacacagcagaatgctgagcagacgcagcagaatgcagctgctgattgctcgtctgctgcaggtcagctggccttggaacattggcctcctg 28384626  T
Q  147 ccaatcatccactaactgtcgagctctgtctacaacttgcgcgctattctccgtaacctcttcccaaattttgagatttcgatgcttccataaactccaa 246  Q
     |||||||||| ||||||||||||| ||||  |||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||    
T  28384625 tcaatcatccattaactgtcgagctatgtcagcaacttgcgcgctattctccgttacctcttcccaaattttgagatttcaatgcttccataaactccaa 28384526  T
Q  247 caaatagcagcaaaacgttgttgaatatacatagacgagttttggagtaaatagaaaattgttttgatggaagaatctgaattcatggccgcattttgca 346  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||| || ||| |||||   ||| |||||||||||||||||||||||||    
T  28384525 caaatagcagcaaaacgttgttgaatatccatagacgagttttggagtaaatagagaactgtgttgataacagagtctgaattcatggccgcattttgca 28384426  T
Q  347 catcctgccacata 360  Q
    ||||||||||||||    
T  28384425 catcctgccacata 28384412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 60 - 349
Target Start/End: Original strand, 38489411 - 38489690
Alignment:
Q  60 agcagactgctgcacagacgcatcataatgcagctgctgattgctcgtctgctgcaggtcagctggcctcggaacattggcctcctgccaatcatccact 159  Q
    |||||||||||||||||||||| ||  ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38489411 agcagactgctgcacagacgcagcaggatgtagctgctgattgctcgtctgctgcaggtcagctggcctcggaacattggcctcctgccaatcatccact 38489510  T
Q  160 aactgtcgagctctgtctacaacttgcgcgctattctccgtaacctcttcccaaattttgagatttcgatgcttccataaactccaacaaatagcagcaa 259  Q
    ||||||| |          |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38489511 aactgtcaa----------caacttgcgcgctattctccgttacctcttcccaaattttgagatttcgatgcttccataaactccaacaaatagcagcaa 38489600  T
Q  260 aacgttgttgaatatacatagacgagttttggagtaaatagaaaattgttttgatggaagaatctgaattcatggccgcattttgcacat 349  Q
    || ||  |||||||| ||||||||||||||||||||||||||||| ||| ||||| ||||| |  ||||| |||||||||||||||||||    
T  38489601 aaggtgattgaatatccatagacgagttttggagtaaatagaaaactgtgttgatagaagagttcgaatttatggccgcattttgcacat 38489690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 205 - 344
Target Start/End: Original strand, 26334337 - 26334474
Alignment:
Q  205 tcttcccaaattttgagatttcgatgcttccataaactccaacaaatagcagcaaaacgttgttgaatatacatagacgagttttggagtaaatagaaaa 304  Q
    ||||||||||||  |||||| |||||||||||||| ||||| ||| | || |||||||||||||| | || |||||  |||||||||||||||||||| |    
T  26334337 tcttcccaaatt--gagattccgatgcttccataagctccagcaagtcgcggcaaaacgttgttggacattcatagttgagttttggagtaaatagaaga 26334434  T
Q  305 ttgttttgatggaagaatctgaattcatggccgcattttg 344  Q
    |||| ||||  | |||||| ||||| ||||| ||||||||    
T  26334435 ttgtattgacagcagaatccgaatttatggctgcattttg 26334474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 208 - 272
Target Start/End: Complemental strand, 45600354 - 45600290
Alignment:
Q  208 tcccaaattttgagatttcgatgcttccataaactccaacaaatagcagcaaaacgttgttgaat 272  Q
    |||||||| ||||| |||||||||||||| || ||||||||||| || ||||  | |||||||||    
T  45600354 tcccaaatcttgaggtttcgatgcttccacaagctccaacaaattgctgcaatgcattgttgaat 45600290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 60 - 360
Target Start/End: Original strand, 16878507 - 16878807
Alignment:
Q  60 agcagactgctgcacagacgcatcataatgcagctgctgattgctcgtctgctgcaggtcagctggcctcggaacattggcctcctgccaatcatccact 159  Q
    |||||||||||||||||||||| || ||||||||||||||||||   ||||||||||||||| |||||||| |||||||||||||| |||||||||||||    
T  16878507 agcagactgctgcacagacgcagcagaatgcagctgctgattgcctatctgctgcaggtcagttggcctcgaaacattggcctcctaccaatcatccact 16878606  T
Q  160 aactgtcgagctctgtctacaacttgcgcgctattctccgtaacctcttcccaaattttgagatttcgatgcttccataaactccaacaaatagcagcaa 259  Q
     ||||||||||||| || |||||||||   ||||||||||| |||||||||||||||||||||||  ||||||||  |||||||||||||||||||||||    
T  16878607 gactgtcgagctctatcaacaacttgcattctattctccgttacctcttcccaaattttgagattctgatgcttctgtaaactccaacaaatagcagcaa 16878706  T
Q  260 aacgttgttgaatatacatagacgagttttggagtaaatagaaaattgttttgatggaagaatctgaattcatggccgcattttgcacatcctgccacat 359  Q
    ||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||  | ||| || |||||||||||||||||||||||||||||||||||    
T  16878707 aacgttgttgaatatccatagacgagttttggagtaaatagaaaactgtgttgacagcagagtccgaattcatggccgcattttgcacatcctgccacat 16878806  T
Q  360 a 360  Q
    |    
T  16878807 a 16878807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 145 - 274
Target Start/End: Complemental strand, 13762998 - 13762867
Alignment:
Q  145 tgccaatcatccactaactgtcgagctctgtctacaacttgcgcgctattctccgtaacctcttcccaaattttgagatttcgatgcttccataaactcc 244  Q
    ||||||||||||  ||| |||| ||||||||| ||| | || |||||||||||||| || |||||||| ||||| || || ||||||||||| |||||||    
T  13762998 tgccaatcatccggtaagtgtctagctctgtcaacagcctgtgcgctattctccgttacatcttcccatattttaaggttccgatgcttccacaaactcc 13762899  T
Q  245 aacaa--atagcagcaaaacgttgttgaatat 274  Q
    |||||  ||||| |||||||| ||||||||||    
T  13762898 aacaaatatagcggcaaaacggtgttgaatat 13762867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 208 - 274
Target Start/End: Complemental strand, 14484978 - 14484912
Alignment:
Q  208 tcccaaattttgagatttcgatgcttccataaactccaacaaatagcagcaaaacgttgttgaatat 274  Q
    ||||||||||| || || || |||||||| |||||||||||| |||||||||| ||||||| |||||    
T  14484978 tcccaaattttaaggttccggtgcttccacaaactccaacaagtagcagcaaagcgttgtttaatat 14484912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 211 - 280
Target Start/End: Complemental strand, 42625514 - 42625445
Alignment:
Q  211 caaattttgagatttcgatgcttccataaactccaacaaatagcagcaaaacgttgttgaatatacatag 280  Q
    |||||||| || || |||||||||||||||||| || ||||||||||||  ||||||| ||||| |||||    
T  42625514 caaatttttaggttccgatgcttccataaactctaaaaaatagcagcaactcgttgtttaatattcatag 42625445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 274
Target Start/End: Original strand, 12527255 - 12527321
Alignment:
Q  208 tcccaaattttgagatttcgatgcttccataaactccaacaaatagcagcaaaacgttgttgaatat 274  Q
    ||||||||||| || || |||||||||||||||||| |  ||||||||||||  ||||||| |||||    
T  12527255 tcccaaatttttaggttccgatgcttccataaactcaagaaaatagcagcaactcgttgtttaatat 12527321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 9e-21; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 205 - 344
Target Start/End: Original strand, 42510830 - 42510969
Alignment:
Q  205 tcttcccaaattttgagatttcgatgcttccataaactccaacaaatagcagcaaaacgttgttgaatatacatagacgagttttggagtaaatagaaaa 304  Q
    |||||||||||||||||||| ||||||||||| || ||||| ||| | ||||||||||| ||||| | || ||||   |||||||||||||||||||| |    
T  42510830 tcttcccaaattttgagattccgatgcttccacaagctccagcaagtcgcagcaaaacgctgttggacattcatatttgagttttggagtaaatagaaga 42510929  T
Q  305 ttgttttgatggaagaatctgaattcatggccgcattttg 344  Q
    |||| ||||  | |||||| ||||| || || ||||||||    
T  42510930 ttgtattgacagcagaatccgaatttattgctgcattttg 42510969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 272
Target Start/End: Original strand, 8862864 - 8862928
Alignment:
Q  208 tcccaaattttgagatttcgatgcttccataaactccaacaaatagcagcaaaacgttgttgaat 272  Q
    |||||||| ||||| |||||||||||||| || ||||||||||| || ||||  |||||||||||    
T  8862864 tcccaaatcttgaggtttcgatgcttccacaagctccaacaaattgctgcaatgcgttgttgaat 8862928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 6e-16; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 65 - 356
Target Start/End: Complemental strand, 20608891 - 20608600
Alignment:
Q  65 actgctgcacagacgcatcataatgcagctgctgattgctcgtctgctgcaggtcagctggcctcggaacattggcctcctgccaatcatccactaactg 164  Q
    ||||||||||| ||||  || |||||| ||||||||||| || |||| ||||  |  ||| || |  || |||||| |||||||||  ||||| ||| ||    
T  20608891 actgctgcacaaacgcggcagaatgcatctgctgattgcccgcctgcagcagcacctctgtccgcaaaaaattggcatcctgccaaaaatccagtaagtg 20608792  T
Q  165 tcgagctctgtctacaacttgcgcgctattctccgtaacctcttcccaaattttgagatttcgatgcttccataaactccaacaaatagcagcaaaacgt 264  Q
    || ||||||||| ||||||||  ||||| |||| |  || |||||||| |||||||| || ||||||||||| |||||  || |||| || | | |||      
T  20608791 tctagctctgtcaacaacttgtacgctagtctcagctacatcttcccatattttgaggttccgatgcttccaaaaactgaaataaattgcggaagaacac 20608692  T
Q  265 tgttgaatatacatagacgagttttggagtaaatagaaaattgttttgatggaagaatctgaattcatggccgcattttgcacatcctgcca 356  Q
     |||||| || |||||  || |||||||| |||||||||||||| || |  | | |||| |||||| |||| |||||| | |||||||||||    
T  20608691 ggttgaagattcataggtgaattttggagcaaatagaaaattgtgttaaccgcataatccgaattcgtggctgcatttcggacatcctgcca 20608600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 205 - 270
Target Start/End: Complemental strand, 5380303 - 5380238
Alignment:
Q  205 tcttcccaaattttgagatttcgatgcttccataaactccaacaaatagcagcaaaacgttgttga 270  Q
    |||||||| | ||| ||||| || ||||||||||||||||||||||  ||| ||||||||||||||    
T  5380303 tcttcccatactttcagattacggtgcttccataaactccaacaaagtgcaacaaaacgttgttga 5380238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 208 - 272
Target Start/End: Original strand, 30847325 - 30847389
Alignment:
Q  208 tcccaaattttgagatttcgatgcttccataaactccaacaaatagcagcaaaacgttgttgaat 272  Q
    ||||||||  |||| |||||||||||||| || ||||||||||| || ||||  |||||||||||    
T  30847325 tcccaaatcatgaggtttcgatgcttccacaagctccaacaaattgctgcaatgcgttgttgaat 30847389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 272
Target Start/End: Complemental strand, 33479867 - 33479803
Alignment:
Q  208 tcccaaattttgagatttcgatgcttccataaactccaacaaatagcagcaaaacgttgttgaat 272  Q
    |||||||||||||| ||  |||||||||| ||||||||||||||   ||||| ||||||||||||    
T  33479867 tcccaaattttgaggttctgatgcttccacaaactccaacaaattatagcaacacgttgttgaat 33479803  T

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