View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5318-Insertion-3 (Length: 980)
Name: NF5318-Insertion-3
Description: NF5318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5318-Insertion-3 |
 | |
|
| [»] scaffold0012 (6 HSPs) |
| | |
|
Alignment Details
Target: scaffold0012 (Bit Score: 647; Significance: 0; HSPs: 6)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 647; E-Value: 0
Query Start/End: Original strand, 175 - 974
Target Start/End: Original strand, 163295 - 164098
Alignment:
| Q |
175 |
tgaattatgacggaatgttggtggattccctgtaaaattgggatttgttggctatatctaaggctgaaaccatttaagaaaacttggttcatgagatcat |
274 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
163295 |
tgaattatgacggtatgttggtggattccctgtaaaattgggatttgttgactatatctaaggctgaaaccatttaagaaaacttggttcatgagatcat |
163394 |
T |
|
| Q |
275 |
ttattagtgtagagtgcttggttattgtttttgtaagagtgtagatgatgattaaggagcttgttcatgagtacacgaatttggttattttattcgattt |
374 |
Q |
| |
|
|| |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
163395 |
tttttagtgtaaaatgcttggttattgtttttgtaagagtgtagatgatgattaaggagcttgttcatgagtacacgaatttggttattttattcgattt |
163494 |
T |
|
| Q |
375 |
tattttccacttatgcattttcttaatgatgttattgttttgattagagaggattcttcttaaaggagataacataaccttaatgatgaacacgtaagtg |
474 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |
|
|
| T |
163495 |
tattttccacttattcattttcttaatgatgttattgttttgattagagaggattcttcttaaaggagataacataactttaatgatgaacacataagtg |
163594 |
T |
|
| Q |
475 |
aaat--taaagttgcattttcatctannnnnnnatgaatttcttcttcgaaatttatctgaaattatgagggaaatgatgacaagcacattggtacagtt |
572 |
Q |
| |
|
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
163595 |
aaattataaagttgcattttcatctatttttttatgaatttcttcttcgaaatttatctgaaattatgagggaaatgatgacgagcacattggtacagtt |
163694 |
T |
|
| Q |
573 |
gttccattcaacaagaaggttgattagtctttaaccttttcagatggaaatgttgtttcagaaatatgatgttaacaatgtcaattttttatgcaccaga |
672 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
163695 |
gttccattcaacaagaaggttgattagtc-ttaaccttttcagatgcaaatgttgtttcagaaatatgatgttaacaatgtcaattttttatgcaccaga |
163793 |
T |
|
| Q |
673 |
cgaatacttggtttgttggtcctcttagttatgcctccttgttgccagattccagcatgaaagccaattgtatatactgtgacaacgatnnnnnnngggt |
772 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |||| |
|
|
| T |
163794 |
cgaatacttggtttgttggtcctcttagttatgcctccttgttgccagattccagcatgaaagccaattgtatatattgtgactccgataaagaaagggt |
163893 |
T |
|
| Q |
773 |
aataattattattagaaaatgaaaaattacttaattgaagtgacagtaaattataaaaaggctgcaagagtattgaaaatagtcac-tttgtatttatca |
871 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
163894 |
aataattattattagaaaatgaaaaattacttaattgaagtgacagtaaattataaaaaggctgcaagagtattgaaaatagtcacttttgtatttatca |
163993 |
T |
|
| Q |
872 |
ttgcattcgcatggggcaaactttggnnnnnnnatctgagactcaacgaaa-ggatgtgtagcttggaagtcacttggtattcg-cccacatcgattgct |
969 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
163994 |
ttgcattcgcatggggcaaactttggtttttttatctgagactcaacgaaagggatgtgtagcttggaagtcacttggtattcgccccacatcgattgct |
164093 |
T |
|
| Q |
970 |
tccat |
974 |
Q |
| |
|
||||| |
|
|
| T |
164094 |
tccat |
164098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012; HSP #2
Raw Score: 105; E-Value: 6e-52
Query Start/End: Original strand, 8 - 116
Target Start/End: Original strand, 163111 - 163219
Alignment:
| Q |
8 |
ttcttcttgaagttagtaagagatccaattatgcaattacacatacaacagcaggaatcatctaacaaagggtgtcctaatcacctatgctctcattctc |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
163111 |
ttcttcttgaagttagtaagagatccaattatgcaattacacatacaacagcaggaatcatctaacaaagggtgtcctaatcacctatgctctcaatctc |
163210 |
T |
|
| Q |
108 |
ttgatgttt |
116 |
Q |
| |
|
||||||||| |
|
|
| T |
163211 |
ttgatgttt |
163219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012; HSP #3
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 771 - 851
Target Start/End: Original strand, 157584 - 157664
Alignment:
| Q |
771 |
gtaataattattattagaaaatgaaaaattacttaattgaagtgacagtaaattataaaaaggctgcaagagtattgaaaa |
851 |
Q |
| |
|
||||||||||||||||||||||||||||||| | |||||| ||||| ||||||||||||||| ||||||||||||||||| |
|
|
| T |
157584 |
gtaataattattattagaaaatgaaaaattagtgaattgatgtgactataaattataaaaaggttgcaagagtattgaaaa |
157664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012; HSP #4
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 543 - 603
Target Start/End: Original strand, 164774 - 164834
Alignment:
| Q |
543 |
ggaaatgatgacaagcacattggtacagttgttccattcaacaagaaggttgattagtctt |
603 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||| |||| ||| |||| |
|
|
| T |
164774 |
ggaaatgatgatgagcacattggtacagttgttccattcaacaagaaagttggttaatctt |
164834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012; HSP #5
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 771 - 847
Target Start/End: Original strand, 149543 - 149620
Alignment:
| Q |
771 |
gtaataattattattagaaaa-tgaaaaattacttaattgaagtgacagtaaattataaaaaggctgcaagagtattg |
847 |
Q |
| |
|
|||||||||||||||| |||| ||| ||| || | |||||| |||||| ||||||||||||||| ||||||||||||| |
|
|
| T |
149543 |
gtaataattattattaaaaaaatgataaactattgaattgaggtgacaataaattataaaaaggttgcaagagtattg |
149620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012; HSP #6
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 774 - 840
Target Start/End: Original strand, 174118 - 174185
Alignment:
| Q |
774 |
ataattattattagaaaa-tgaaaaattacttaattgaagtgacagtaaattataaaaaggctgcaag |
840 |
Q |
| |
|
||||||||||||| |||| |||||||||||| |||| |||||| | ||||||||||||||| |||||| |
|
|
| T |
174118 |
ataattattattaaaaaaatgaaaaattactgaattaaagtgataataaattataaaaaggttgcaag |
174185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 103; Significance: 1e-50; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 103; E-Value: 1e-50
Query Start/End: Original strand, 769 - 971
Target Start/End: Complemental strand, 34399592 - 34399390
Alignment:
| Q |
769 |
gggtaataattattattagaaaatgaaaaattacttaattgaagtgacagtaaattataaaaaggctgcaagagtattgaaaatagtcactttgtattta |
868 |
Q |
| |
|
|||||||||| ||||||||||||||||||| |||||||||||||| ||| |||||||||||| | |||||||||||||||||||||||||||||||||| |
|
|
| T |
34399592 |
gggtaataataattattagaaaatgaaaaaatacttaattgaagtaacaaaaaattataaaaaagatgcaagagtattgaaaatagtcactttgtattta |
34399493 |
T |
|
| Q |
869 |
tcattgcattcgcatggggcaaactttggnnnnnnnatctgagactcaacgaaa-ggatgtgtagcttggaagtcacttggtattcg-cccacatcgatt |
966 |
Q |
| |
|
||||||||||| ||| ||||| ||||||| |||||| ||||||| ||| ||||||||| |||| ||||||||||||||||| |||||||||||| |
|
|
| T |
34399492 |
tcattgcattcacat-gggcatactttgg-ttttttatctgaaactcaaccaaagggatgtgtatcttgaaagtcacttggtattcgccccacatcgatt |
34399395 |
T |
|
| Q |
967 |
gcttc |
971 |
Q |
| |
|
||||| |
|
|
| T |
34399394 |
gcttc |
34399390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 3e-29; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 381 - 495
Target Start/End: Original strand, 30884709 - 30884823
Alignment:
| Q |
381 |
ccacttatgcattttcttaatgatgttattgttttgattagagaggattcttcttaaaggagataacataaccttaatgatgaacacgtaagtgaaatta |
480 |
Q |
| |
|
||||| ||||||||||| || | |||||||||||||||||| |||||| |||||||||||||| |||||||| || |||||||||||||||||||||||| |
|
|
| T |
30884709 |
ccactcatgcattttctgaagggtgttattgttttgattagggaggatccttcttaaaggagacaacataactttgatgatgaacacgtaagtgaaatta |
30884808 |
T |
|
| Q |
481 |
aagttgcattttcat |
495 |
Q |
| |
|
|| | ||||||||| |
|
|
| T |
30884809 |
aaatcacattttcat |
30884823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 66; Significance: 1e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 386 - 498
Target Start/End: Original strand, 44989759 - 44989869
Alignment:
| Q |
386 |
tatgcattttcttaatgatgttattgttttgattagagaggattcttcttaaaggagataacataaccttaatgatgaacacgtaagtgaaattaaagtt |
485 |
Q |
| |
|
|||||||||||| ||||||||||||||| |||||| |||||| ||||||||||||||||||||||| || |||||||||||||||||||| || || || |
|
|
| T |
44989759 |
tatgcattttctgaatgatgttattgtt--gattagggaggatccttcttaaaggagataacataactttgatgatgaacacgtaagtgaagttgaaatt |
44989856 |
T |
|
| Q |
486 |
gcattttcatcta |
498 |
Q |
| |
|
|||||||||||| |
|
|
| T |
44989857 |
acattttcatcta |
44989869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University