View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5318-Insertion-5 (Length: 632)

Name: NF5318-Insertion-5
Description: NF5318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5318-Insertion-5
NF5318-Insertion-5
[»] scaffold0268 (1 HSPs)
scaffold0268 (264-624)||(18730-19090)
[»] scaffold0031 (1 HSPs)
scaffold0031 (269-632)||(90963-91340)
[»] chr6 (6 HSPs)
chr6 (264-632)||(2196694-2197076)
chr6 (268-632)||(24016695-24017073)
chr6 (264-425)||(629808-629969)
chr6 (263-310)||(31098699-31098746)
chr6 (264-310)||(1569578-1569624)
chr6 (264-310)||(35176248-35176294)
[»] chr8 (8 HSPs)
chr8 (264-578)||(9866132-9866438)
chr8 (263-334)||(130107-130178)
chr8 (376-490)||(34904918-34905030)
chr8 (546-632)||(34905083-34905169)
chr8 (264-310)||(32057265-32057311)
chr8 (264-304)||(9875372-9875412)
chr8 (264-310)||(41708415-41708461)
chr8 (281-310)||(9875166-9875195)
[»] chr7 (13 HSPs)
chr7 (263-632)||(13925813-13926196)
chr7 (340-490)||(38656967-38657116)
chr7 (546-632)||(38657170-38657256)
chr7 (340-459)||(8943031-8943150)
chr7 (264-310)||(19794397-19794443)
chr7 (260-310)||(6730277-6730327)
chr7 (264-310)||(13931851-13931897)
chr7 (264-310)||(15746687-15746733)
chr7 (265-304)||(19795284-19795323)
chr7 (263-310)||(45720724-45720771)
chr7 (264-310)||(21460130-21460176)
chr7 (266-310)||(13926222-13926266)
chr7 (262-310)||(26854877-26854925)
[»] scaffold1603 (1 HSPs)
scaffold1603 (264-582)||(1-332)
[»] chr5 (6 HSPs)
chr5 (263-549)||(22292546-22292846)
chr5 (153-263)||(24882060-24882170)
chr5 (532-632)||(22287763-22287863)
chr5 (263-459)||(13578875-13579081)
chr5 (7-96)||(24881913-24882002)
chr5 (264-310)||(42910046-42910092)
[»] chr2 (7 HSPs)
chr2 (340-560)||(29075746-29075981)
chr2 (340-490)||(15573258-15573405)
chr2 (546-632)||(15573118-15573204)
chr2 (262-310)||(29076031-29076079)
chr2 (264-310)||(12521365-12521411)
chr2 (264-310)||(12524142-12524188)
chr2 (264-310)||(33473865-33473911)
[»] chr1 (12 HSPs)
chr1 (340-585)||(27052428-27052689)
chr1 (260-310)||(37179116-37179166)
chr1 (264-310)||(38634964-38635010)
chr1 (262-310)||(8674693-8674741)
chr1 (262-310)||(51311643-51311691)
chr1 (262-310)||(51719435-51719483)
chr1 (264-310)||(10459767-10459813)
chr1 (264-310)||(28032875-28032921)
chr1 (264-310)||(48734910-48734956)
chr1 (264-310)||(50138338-50138384)
chr1 (264-300)||(38634083-38634119)
chr1 (262-310)||(48980703-48980751)
[»] chr3 (14 HSPs)
chr3 (412-632)||(41523222-41523457)
chr3 (340-475)||(52616350-52616486)
chr3 (340-487)||(51846921-51847068)
chr3 (340-479)||(11758942-11759078)
chr3 (264-337)||(31893430-31893503)
chr3 (351-411)||(29223259-29223321)
chr3 (263-304)||(34134118-34134159)
chr3 (516-557)||(51847120-51847161)
chr3 (368-410)||(41523474-41523517)
chr3 (264-310)||(11758856-11758902)
chr3 (264-310)||(35441776-35441822)
chr3 (264-310)||(35442568-35442614)
chr3 (270-310)||(44308430-44308470)
chr3 (266-310)||(49085300-49085344)
[»] chr4 (9 HSPs)
chr4 (527-632)||(15743163-15743268)
chr4 (351-488)||(13736611-13736746)
chr4 (340-487)||(26889203-26889350)
chr4 (516-557)||(26889110-26889151)
chr4 (566-632)||(13736814-13736880)
chr4 (264-337)||(43259800-43259873)
chr4 (264-304)||(28804180-28804220)
chr4 (263-307)||(47326271-47326315)
chr4 (263-307)||(47341067-47341111)
[»] scaffold0604 (1 HSPs)
scaffold0604 (265-310)||(7217-7262)
[»] scaffold0027 (1 HSPs)
scaffold0027 (262-310)||(18020-18068)
[»] scaffold0047 (1 HSPs)
scaffold0047 (264-310)||(50417-50463)


Alignment Details
Target: scaffold0268 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: scaffold0268
Description:

Target: scaffold0268; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 264 - 624
Target Start/End: Complemental strand, 19090 - 18730
Alignment:
Q  264 ggtggcatttagcatgcacaaatgatagatttgtgcaccatgcacaattttcccatggaaggacagctggcggtaatttacctgctagaatattttaatg 363  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||    
T  19090 ggtggcatttagcatgcacaaatgatagatttgtgcaccatgcacaattttcccatggaaggacagctggaggtaaattacctgctagaatattttaatg 18991  T
Q  364 tttcatattatattgtaaaatattcatttattgtttctgctgctcacacccccctaaaaaactgtcagttatcagcaataacttgtacaccccctagtaa 463  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  18990 tttcatattatattgtaaaatattcatttattgtttctgctgctcacatccccctaaaaaacagtcagttatcagcaataacttgtacaccccctagtaa 18891  T
Q  464 aattgaaacatggagattagtaattcaactcttttcagaatatattaattttagctttgtttcccttctccttcatgcttaacattcttcttcatctcca 563  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  18890 aattgaaacatggagagtagtaattcaactcttttcagaatatattaattttagctttgtttcccttctccttcatgcttaacattattcttcatctcca 18791  T
Q  564 tagccacccatatttttgacatttccagacatcctttctcctttgtgcttaacttaaagtt 624  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  18790 tagccacccatatttttgacatttccatacatcctttctcctttgtgcttaacttaaagtt 18730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 269 - 632
Target Start/End: Complemental strand, 91340 - 90963
Alignment:
Q  269 catttagcatgcacaaatgatagatttgtgcaccatgcacaattttcccatggaaggacagctggcggtaatttacctgctagaatattttaatgtttca 368  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || ||||||||||   ||    
T  91340 catttagtatgcacaaatgatagatttgtgcaccatgcacaattttcccatggaaggacagctgtcggtaatttacctgctggattattttaatgaaaca 91241  T
Q  369 tattatattgtaaaatattcatttattgtttctgctgctcacacccccctaaaaaactgtcagttatcagcaataacttgtacaccccctagtaaaattg 468  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||| |||| |||    
T  91240 tattatattgtaaaatattcatttattgtttctgctgctcacacccccctaaaaaacaaccagttatcagcaataacttgtacaccccctactaaacttg 91141  T
Q  469 aaacatggagattagtaattcaactctttt--------------cagaatatattaattttagctttgtttcccttctccttcatgcttaacattcttct 554  Q
    ||||||| ||| ||||||||||||||||||              |||||||||| | |||||||||||||||||||||||||||||||||||||||||||    
T  91140 aaacatgaagagtagtaattcaactcttttcactagtgacacaccagaatatatcatttttagctttgtttcccttctccttcatgcttaacattcttct 91041  T
Q  555 tcatctccatagccacccatatttttgacatttccagacatcctttctcctttgtgcttaacttaaagtttttcttca 632  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  91040 tcatctccatagccacccatatttttgacatttccagacatcctttctcctttgtgcttaacttaaagttcttcttca 90963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 260; Significance: 1e-144; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 264 - 632
Target Start/End: Complemental strand, 2197076 - 2196694
Alignment:
Q  264 ggtggcatttagcatgcacaaatgatagatttgtgcaccatgcacaattttcccatggaaggacagctggcggtaatttacctgctagaatattttaatg 363  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||| || |||||||||||||    
T  2197076 ggtggcatttagcatgcacaaatgatagatttgtgcaccatgcacaatttttgtatggaaggacagctggcggtaatttacctactggaatattttaatg 2196977  T
Q  364 tttcatattatattgtaaaatattcatttattgtttctgctgctcacacccccctaaaaaactgtcagttatcagcaataacttgtacaccccctagtaa 463  Q
       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||| || |||    
T  2196976 aaacatattatattgtaaaatattcatttattgtttctgctgctcacacccccctaaaaaacaaccagttatcagcaataacttgtacaccccttactaa 2196877  T
Q  464 aattgaaacatggagattagtaattcaactcttt--------------tcagaatatattaattttagctttgtttcccttctccttcatgcttaacatt 549  Q
    |||||||||||||||| |||||||||||||||||              ||||||||||| | ||||| ||||||||||||||||||||||||||||||||    
T  2196876 aattgaaacatggagagtagtaattcaactcttttcacaagtgacacatcagaatatatcatttttaactttgtttcccttctccttcatgcttaacatt 2196777  T
Q  550 cttcttcatctccatagccacccatatttttgacatttccagacatcctttctcctttgtgcttaacttaaagtttttcttca 632  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  2196776 cttcttcatctccaaagccacccatatttttgacatttccagacatcctttctcctttgtgcttaacttaaagttcttcttca 2196694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 268 - 632
Target Start/End: Original strand, 24016695 - 24017073
Alignment:
Q  268 gcatttagcatgcacaaatgatagatttgtgcaccatgcacaattttcccatggaaggacagctggcggtaatttacctgctagaatattttaatgtttc 367  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || ||||||||||   |    
T  24016695 gcatttagtatgcacaaatgatagatttgtgcaccatgcacaattttcccatggaaggacagctgacggtaatttacctgctggattattttaatgaaac 24016794  T
Q  368 atattatattgtaaaatattcatttattgtttctgctgctcacacccccctaaaaaactgtcagttatcagcaataacttgtacaccccctagtaaaatt 467  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    |||||||||||||||||||||||||||||| |||||||    
T  24016795 atattatattgtaaaatattcatttattgtttctgttgctcacacccccctaaaaaacaactagttatcagcaataacttgtacaccccctactaaaatt 24016894  T
Q  468 gaaacatggagattagtaattcaactctttt--------------cagaatatattaattttagctttgtttcccttctccttcatgcttaacattcttc 553  Q
    |||||||||||| ||||||||||||||||||              |||||||||| | ||||||||||||||||||||||||||||||||||||||||||    
T  24016895 gaaacatggagagtagtaattcaactcttttcactagtgacacaccagaatatatcatttttagctttgtttcccttctccttcatgcttaacattcttc 24016994  T
Q  554 ttcatctccatagccacccatatttttgacatttccagacatcctttctcctttgtgcttaacttaaagtttttcttca 632  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  24016995 ttcatctccatagccacccaaatttttgacatttccagacatcctttctcctttgtgcttaacttaaagttcttcttca 24017073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 264 - 425
Target Start/End: Original strand, 629808 - 629969
Alignment:
Q  264 ggtggcatttagcatgcacaaatgatagatttgtgcaccatgcacaattttcccatggaaggacagctggcggtaatttacctgctagaatattttaatg 363  Q
    |||| ||||||| ||||||||||   ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||     
T  629808 ggtgccatttagaatgcacaaatacaagatttgtgcaccatgcacaatttttccatggaaggacagctggcggtaatttacctgctggaatattttaatc 629907  T
Q  364 tttcatattatattgtaaaatatt-catttattgtttctgctgctcacacccccctaaaaaac 425  Q
        ||||||||||||| |||||| ||||||||||||||||||| |||| |||||||||||||    
T  629908 aaaaatattatattgtataatattccatttattgtttctgctgcacaca-ccccctaaaaaac 629969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 263 - 310
Target Start/End: Original strand, 31098699 - 31098746
Alignment:
Q  263 tggtggcatttagcatgcacaaatgatagatttgtgcaccatgcacaa 310  Q
    |||| ||||||||||||||||||| ||| |||||||||||||||||||    
T  31098699 tggtagcatttagcatgcacaaattataaatttgtgcaccatgcacaa 31098746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 264 - 310
Target Start/End: Original strand, 1569578 - 1569624
Alignment:
Q  264 ggtggcatttagcatgcacaaatgatagatttgtgcaccatgcacaa 310  Q
    |||||||||||||||||||||  || |||||||||||||||||||||    
T  1569578 ggtggcatttagcatgcacaagggaaagatttgtgcaccatgcacaa 1569624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 264 - 310
Target Start/End: Original strand, 35176248 - 35176294
Alignment:
Q  264 ggtggcatttagcatgcacaaatgatagatttgtgcaccatgcacaa 310  Q
    |||||||||||||||||||||   ||| |||||||||||||||||||    
T  35176248 ggtggcatttagcatgcacaagatataaatttgtgcaccatgcacaa 35176294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 237; Significance: 1e-131; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 264 - 578
Target Start/End: Original strand, 9866132 - 9866438
Alignment:
Q  264 ggtggcatttagcatgcacaaatgatagatttgtgcaccatgcacaattttcccatggaaggacagctggcggtaatttacctgctagaatattttaatg 363  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||  ||||| | |||||||||||||||||||||    
T  9866132 ggtggcatttagcatgcacaaatgatagatttgtgcaccatgcacaatttttccatggaaggacagctgtaggtaaatgacctgctagaatattttaatg 9866231  T
Q  364 tttcatattatattgtaaaatattcatttattgtttctgctgctcacacccccctaaaaaactgtcagttatcagcaataacttgtacaccccctagtaa 463  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||    
T  9866232 tttcatattatattgtaaaatattcatttattgtttctgctgctcacacccccctaaaaagcagtcagttatcagcaataacttgtacaccccctagtaa 9866331  T
Q  464 aattgaaacatggagattagtaattcaactcttttcagaatatattaattttagctttgtttcccttctccttcatgcttaacattcttcttcatctcca 563  Q
    |||| ||||||||||| |||||| | |||| ||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||    
T  9866332 aatttaaacatggagagtagtaaataaact-ttttcagaatatattaattttagctttgtt-------tccttcatgcttaacattcttcttcatctcca 9866423  T
Q  564 tagccacccatattt 578  Q
    |||||||||||||||    
T  9866424 tagccacccatattt 9866438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 263 - 334
Target Start/End: Complemental strand, 130178 - 130107
Alignment:
Q  263 tggtggcatttagcatgcacaaatgatagatttgtgcaccatgcacaattttcccatggaaggacagctggc 334  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  130178 tggtggcatttagcatgcacaaatgatagatttgtgcaccatgcacaattttcccatggaaggatagctggc 130107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 376 - 490
Target Start/End: Original strand, 34904918 - 34905030
Alignment:
Q  376 ttgtaaaatattc-atttattgtttctgctgctcacacccccctaaaaaactgtcagttatcagcaataacttgtacaccccctagtaaaattgaaacat 474  Q
    ||||||||||||| |||||||||||||||||||||||||| ||||||||||   || ||||||||||||||||||| || |||   ||||||||||||||    
T  34904918 ttgtaaaatattccatttattgtttctgctgctcacaccctcctaaaaaaccaccacttatcagcaataacttgtatactccc---taaaattgaaacat 34905014  T
Q  475 ggagattagtaattca 490  Q
    | | | ||||||||||    
T  34905015 gaaaagtagtaattca 34905030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 546 - 632
Target Start/End: Original strand, 34905083 - 34905169
Alignment:
Q  546 cattcttcttcatctccatagccacccatatttttgacatttccagacatcctttctcctttgtgcttaacttaaagtttttcttca 632  Q
    |||| |||||||||||||||||||||||| || |||||||||||| | || ||||||||||  |||||||||||||||| |||||||    
T  34905083 catttttcttcatctccatagccacccatgttcttgacatttccatatatgctttctccttcatgcttaacttaaagttcttcttca 34905169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 264 - 310
Target Start/End: Original strand, 32057265 - 32057311
Alignment:
Q  264 ggtggcatttagcatgcacaaatgatagatttgtgcaccatgcacaa 310  Q
    |||||||||||||||||||||  || |||||||||||||||||||||    
T  32057265 ggtggcatttagcatgcacaagggaaagatttgtgcaccatgcacaa 32057311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 264 - 304
Target Start/End: Complemental strand, 9875412 - 9875372
Alignment:
Q  264 ggtggcatttagcatgcacaaatgatagatttgtgcaccat 304  Q
    |||||||||||||||||||||||| || |||||||||||||    
T  9875412 ggtggcatttagcatgcacaaatgttaaatttgtgcaccat 9875372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 264 - 310
Target Start/End: Original strand, 41708415 - 41708461
Alignment:
Q  264 ggtggcatttagcatgcacaaatgatagatttgtgcaccatgcacaa 310  Q
    |||||||||||| ||||||||||  || |||||||||||||||||||    
T  41708415 ggtggcatttagaatgcacaaatattaaatttgtgcaccatgcacaa 41708461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 281 - 310
Target Start/End: Complemental strand, 9875195 - 9875166
Alignment:
Q  281 acaaatgatagatttgtgcaccatgcacaa 310  Q
    ||||||||||||||||||||||||||||||    
T  9875195 acaaatgatagatttgtgcaccatgcacaa 9875166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 237; Significance: 1e-131; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 263 - 632
Target Start/End: Complemental strand, 13926196 - 13925813
Alignment:
Q  263 tggtggcatttagcatgcacaaatgatagatttgtgcaccatgcacaattttcccatggaaggacagctggcggtaatttacctgctagaatattttaat 362  Q
    ||||||||||||| ||||||||||   ||||||||||||||||||||| |||   |||||||||||||||||||||||||||||||| ||||||||||||    
T  13926196 tggtggcatttagaatgcacaaatacaagatttgtgcaccatgcacaacttttgtatggaaggacagctggcggtaatttacctgctggaatattttaat 13926097  T
Q  363 gtttcatattatattgtaaaatattcatttattgtttctgctgctcacacccccctaaaaaactgtcagttatcagcaataacttgtacaccccctagta 462  Q
        ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||| ||    
T  13926096 aaaacatattatattataaaatattcatttattgtttctgctgctcacacccccctaaaaaacaactagttatcagcaataacttgtacaccccctacta 13925997  T
Q  463 aaattgaaacatggagattagtaattcaactctttt--------------cagaatatattaattttagctttgtttcccttctccttcatgcttaacat 548  Q
    ||||||||||||||||| ||||||||||||||||||              |||||||||| | |||||||||||||||||||||||||||||||||||||    
T  13925996 aaattgaaacatggagagtagtaattcaactcttttcacaagtgacacaccagaatatatcatttttagctttgtttcccttctccttcatgcttaacat 13925897  T
Q  549 tcttcttcatctccatagccacccatatttttgacatttccagacatcctttctcctttgtgcttaacttaaagtttttcttca 632  Q
    |||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||    
T  13925896 tcttcttcatcttcatagccacccatatttttgacattttcagacatcctttctcctttgtgcttaacttaaagttcttcttca 13925813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 340 - 490
Target Start/End: Original strand, 38656967 - 38657116
Alignment:
Q  340 tttacctgctagaatattttaatgtttcatattatattgtaaaatattc-atttattgtttctgctgctcacacccccctaaaaaactgtcagttatcag 438  Q
    |||||||||| |||||||||||||   |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||   ||||||||||    
T  38656967 tttacctgctggaatattttaatgaaacatattatattgtaaaatattttatttattgtttctgctgctcacacccccctaaaaaacaaccagttatcag 38657066  T
Q  439 caataacttgtacaccccctagtaaaattgaaacatggagattagtaattca 490  Q
    ||||||||||||||||||||| |||||||||| |||  ||| ||||||||||    
T  38657067 caataacttgtacaccccctactaaaattgaagcat--agagtagtaattca 38657116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 546 - 632
Target Start/End: Original strand, 38657170 - 38657256
Alignment:
Q  546 cattcttcttcatctccatagccacccatatttttgacatttccagacatcctttctcctttgtgcttaacttaaagtttttcttca 632  Q
    |||| |||||||||||||||||||||||| || |||||||||||||| || ||||||||||  |||||||||||||||| |||||||    
T  38657170 catttttcttcatctccatagccacccatgttcttgacatttccagatatgctttctccttcatgcttaacttaaagttcttcttca 38657256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 340 - 459
Target Start/End: Original strand, 8943031 - 8943150
Alignment:
Q  340 tttacctgctagaatattttaatgtttcatattatattgtaaaatattc-atttattgtttctgctgctcacacccccctaaaaaactgtcagttatcag 438  Q
    |||||||||| ||||||||||||     ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||    || |||||||    
T  8943031 tttacctgctggaatattttaatcaaaaatattatattgtaaaatattccatttattgtttctgctgctcaca-ccccctaaaaaaacaccacttatcag 8943129  T
Q  439 caataacttgtacacccccta 459  Q
    |||| | ||||| ||||||||    
T  8943130 caattatttgtatacccccta 8943150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 264 - 310
Target Start/End: Original strand, 19794397 - 19794443
Alignment:
Q  264 ggtggcatttagcatgcacaaatgatagatttgtgcaccatgcacaa 310  Q
    ||||||||||||||||||||| ||||| |||||||||||||||||||    
T  19794397 ggtggcatttagcatgcacaattgataaatttgtgcaccatgcacaa 19794443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 260 - 310
Target Start/End: Complemental strand, 6730327 - 6730277
Alignment:
Q  260 aaatggtggcatttagcatgcacaaatgatagatttgtgcaccatgcacaa 310  Q
    ||||||||||||||||||||||||| | | | |||||||||||||||||||    
T  6730327 aaatggtggcatttagcatgcacaactaacaaatttgtgcaccatgcacaa 6730277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 264 - 310
Target Start/End: Complemental strand, 13931897 - 13931851
Alignment:
Q  264 ggtggcatttagcatgcacaaatgatagatttgtgcaccatgcacaa 310  Q
    |||||||||||||||||||||  || |||||||||||||||||||||    
T  13931897 ggtggcatttagcatgcacaagggaaagatttgtgcaccatgcacaa 13931851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 264 - 310
Target Start/End: Complemental strand, 15746733 - 15746687
Alignment:
Q  264 ggtggcatttagcatgcacaaatgatagatttgtgcaccatgcacaa 310  Q
    |||||||||||||||||||||  || |||||||||||||||||||||    
T  15746733 ggtggcatttagcatgcacaagggaaagatttgtgcaccatgcacaa 15746687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 265 - 304
Target Start/End: Complemental strand, 19795323 - 19795284
Alignment:
Q  265 gtggcatttagcatgcacaaatgatagatttgtgcaccat 304  Q
    |||||||||||||||||||| ||||| |||||||||||||    
T  19795323 gtggcatttagcatgcacaattgataaatttgtgcaccat 19795284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 263 - 310
Target Start/End: Original strand, 45720724 - 45720771
Alignment:
Q  263 tggtggcatttagcatgcacaaatgatagatttgtgcaccatgcacaa 310  Q
    |||||||||||||  |||| |||||||| |||||||||||||||||||    
T  45720724 tggtggcatttagggtgcataaatgataaatttgtgcaccatgcacaa 45720771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 264 - 310
Target Start/End: Original strand, 21460130 - 21460176
Alignment:
Q  264 ggtggcatttagcatgcacaaatgatagatttgtgcaccatgcacaa 310  Q
    |||||||||||| ||||||||||| || ||||||| |||||||||||    
T  21460130 ggtggcatttaggatgcacaaatgttaaatttgtgtaccatgcacaa 21460176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 266 - 310
Target Start/End: Original strand, 13926222 - 13926266
Alignment:
Q  266 tggcatttagcatgcacaaatgatagatttgtgcaccatgcacaa 310  Q
    |||||||||||||||||||  || |||||||| ||||||||||||    
T  13926222 tggcatttagcatgcacaagagaaagatttgtacaccatgcacaa 13926266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 262 - 310
Target Start/End: Original strand, 26854877 - 26854925
Alignment:
Q  262 atggtggcatttagcatgcacaaatgatagatttgtgcaccatgcacaa 310  Q
    |||||||||||||  |||||||||| ||| ||||||||| |||||||||    
T  26854877 atggtggcatttacaatgcacaaattataaatttgtgcatcatgcacaa 26854925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1603 (Bit Score: 196; Significance: 1e-106; HSPs: 1)
Name: scaffold1603
Description:

Target: scaffold1603; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 264 - 582
Target Start/End: Complemental strand, 332 - 1
Alignment:
Q  264 ggtggcatttagcatgcacaaatgatagatttgtgcaccatgcacaattttcccatggaaggacagctggcggtaatttacctgctagaatattttaatg 363  Q
    |||| ||||||| ||||||||||   | |||||||||||||||||||||||||||||||| ||||||||| |||||||||||| || |||||||||||||    
T  332 ggtgccatttagaatgcacaaatataaaatttgtgcaccatgcacaattttcccatggaatgacagctggtggtaatttaccttctggaatattttaatg 233  T
Q  364 tttcatattatattgtaaaatattcatttattgtttctgctgctcacacccccctaaaaaactgtcagttatcagcaataacttgtacaccccctagtaa 463  Q
       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||| |||    
T  232 aaacatattatattgtaaaatattcatttattgtttctgctgctcacacccccctaaaaaacaaccagttatcagcaataacttgtacaccccctactaa 133  T
Q  464 aattgaaacatggagattagtaattcaactctt-------------ttcagaatatattaattttagctttgtttcccttctccttcatgcttaacattc 550  Q
    |||||||||||||||| ||||||||||||| ||               |||||||||| | |||||||||||||||||||||||||||||||||||||||    
T  132 aattgaaacatggagagtagtaattcaacttttccataagtgacacaccagaatatatcatttttagctttgtttcccttctccttcatgcttaacattc 33  T
Q  551 ttcttcatctccatagccacccatatttttga 582  Q
    ||||||||||||||||||||||||||||||||    
T  32 ttcttcatctccatagccacccatatttttga 1  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 182; Significance: 4e-98; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 263 - 549
Target Start/End: Complemental strand, 22292846 - 22292546
Alignment:
Q  263 tggtggcatttagcatgcacaaatgatagatttgtgcaccatgcacaattttcccatggaaggacagctggcggtaatttacctgctagaatattttaat 362  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||| ||||||||||||    
T  22292846 tggtggcatttagtatgcacaaatgatagatttgtgcaccatgcacaattttcccatggaaggacagctggcggtttcatacctgctggaatattttaat 22292747  T
Q  363 gtttcatattatattgtaaaatattcatttattgtttctgctgctcacacccccctaaaaaactgtcagttatcagcaataacttgtacaccccctagta 462  Q
    |   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |   ||||||||||||||||||| ||||||||||| ||    
T  22292746 gaaacatattatattgtaaaatattcatttattgtttctgctgctcacacccccctaaaaagcaaccagttatcagcaataacttttacaccccctacta 22292647  T
Q  463 aaattgaaacatggagattagtaattcaactctttt--------------cagaatatattaattttagctttgtttcccttctccttcatgcttaacat 548  Q
    ||||||||||||||||| ||||||||||||||||||              |||||||||| | |||||||||||||||||||||||||||||||||||||    
T  22292646 aaattgaaacatggagagtagtaattcaactcttttcactagtgacacaccagaatatatcatttttagctttgtttcccttctccttcatgcttaacat 22292547  T
Q  549 t 549  Q
    |    
T  22292546 t 22292546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 153 - 263
Target Start/End: Original strand, 24882060 - 24882170
Alignment:
Q  153 caaacttatatttgggtgacttgcatattataagaatttgaacaaaataaagagagcatgagtgacacattaaatgagacgatttgaattcttttggtaa 252  Q
    ||||||||||||| ||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24882060 caaacttatatttaggtgacttgcatattataagaatttaaataaaataaagagagcatgagtgacacattaaatgagacgatttgaattcttttggtaa 24882159  T
Q  253 acgtgagaaat 263  Q
    |||||||||||    
T  24882160 acgtgagaaat 24882170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 532 - 632
Target Start/End: Complemental strand, 22287863 - 22287763
Alignment:
Q  532 tccttcatgcttaacattcttcttcatctccatagccacccatatttttgacatttccagacatcctttctcctttgtgcttaacttaaagtttttcttc 631  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  22287863 tccttcatgcttaacattcttcttcatctccatagccacccatatttttgacatttccagacatcctttctcctttgtgcttaacttaaagttcttcttc 22287764  T
Q  632 a 632  Q
    |    
T  22287763 a 22287763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 263 - 459
Target Start/End: Complemental strand, 13579081 - 13578875
Alignment:
Q  263 tggtggcatttagcatgcacaaatgatagatttgtgcaccatgcacaattttcccatggaaggacagctggcggtaa----------tttacctgctaga 352  Q
    ||||||||||||| |||||||||||  ||||||||||| ||||||||| ||   ||||||||||||| |||||||||          |||||||||| ||    
T  13579081 tggtggcatttagtatgcacaaatgcaagatttgtgcatcatgcacaacttgtgcatggaaggacagttggcggtaaaaattcaaattttacctgctgga 13578982  T
Q  353 atattttaatgtttcatattatattgtaaaatatt-catttattgtttctgctgctcacacccccctaaaaaactgtcagttatcagcaataacttgtac 451  Q
    ||||| ||||     |||||||| ||||||||||| |||||||| ||||||||| ||||| |||||||||||||   || |||||| |||| |||||||     
T  13578981 atattctaatcaaaaatattataatgtaaaatattccatttattatttctgctgttcaca-ccccctaaaaaaccaccacttatcaacaattacttgtat 13578883  T
Q  452 acccccta 459  Q
    ||||||||    
T  13578882 acccccta 13578875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 7 - 96
Target Start/End: Original strand, 24881913 - 24882002
Alignment:
Q  7 attttatacatggttagaaaaactccttatattaaannnnnnnnnnnnnnaactcaactttcaatctaactcctaaactcaaaggtctcc 96  Q
    |||||| |||||||||||||||||||||||||||||              ||||||||||||||||||||||||||||||||||||||||    
T  24881913 attttagacatggttagaaaaactccttatattaaatttttagtttttttaactcaactttcaatctaactcctaaactcaaaggtctcc 24882002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 264 - 310
Target Start/End: Complemental strand, 42910092 - 42910046
Alignment:
Q  264 ggtggcatttagcatgcacaaatgatagatttgtgcaccatgcacaa 310  Q
    ||||||||||||||||||||||  ||| ||||||||||||| |||||    
T  42910092 ggtggcatttagcatgcacaaaacataaatttgtgcaccatacacaa 42910046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 137; Significance: 3e-71; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 340 - 560
Target Start/End: Complemental strand, 29075981 - 29075746
Alignment:
Q  340 tttacctgctagaatattttaatgtttcatattatattgtaaaatattc-atttattgtttctgctgctcacacccccctaaaaaactgtcagttatcag 438  Q
    |||||||||| |||||||||||||   |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||   ||||||||||    
T  29075981 tttacctgctggaatattttaatgaaacatattatattgtaaaatattccatttattgtttctgctgctcacacccccctaaaaaacaaccagttatcag 29075882  T
Q  439 caataacttgtacaccccctagtaaaattgaaacatggagattagtaattcaactctttt--------------cagaatatattaattttagctttgtt 524  Q
    ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||              |||||||||| | |||||||||||||    
T  29075881 caataacttgtacaccccctactaaaattgaaacatggagagtagtaattcaactcttttcacaagtgacacaccagaatatatcatttttagctttgtt 29075782  T
Q  525 tcccttctccttcatgcttaacattcttcttcatct 560  Q
    ||||||||||||||||||||||||||||||||||||    
T  29075781 tcccttctccttcatgcttaacattcttcttcatct 29075746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 340 - 490
Target Start/End: Complemental strand, 15573405 - 15573258
Alignment:
Q  340 tttacctgctagaatattttaatgtttcatattatattgtaaaatattc-atttattgtttctgctgctcacacccccctaaaaaactgtcagttatcag 438  Q
    |||||||||| |||||||||||||   |||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||   ||  ||||||    
T  15573405 tttacctgctggaatattttaatgaaacatattatattgtaaaatattccatttattgtttctactgctcacacccccctaaaaaaccacca-ctatcag 15573307  T
Q  439 caataacttgtacaccccctagtaaaattgaaacatggagattagtaattca 490  Q
    |||||||||||| ||||||   ||||||||||| ||||||| ||||||||||    
T  15573306 caataacttgtataccccc---taaaattgaaatatggagagtagtaattca 15573258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 546 - 632
Target Start/End: Complemental strand, 15573204 - 15573118
Alignment:
Q  546 cattcttcttcatctccatagccacccatatttttgacatttccagacatcctttctcctttgtgcttaacttaaagtttttcttca 632  Q
    |||| |||||||||||||||||||||||| || ||||||||| |||| || ||||||||||  |||||||||||||||| |||||||    
T  15573204 catttttcttcatctccatagccacccatgttcttgacattttcagatatgctttctccttcatgcttaacttaaagttcttcttca 15573118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 262 - 310
Target Start/End: Complemental strand, 29076079 - 29076031
Alignment:
Q  262 atggtggcatttagcatgcacaaatgatagatttgtgcaccatgcacaa 310  Q
    |||||||||||||| ||||||||||   |||||||||||||||||||||    
T  29076079 atggtggcatttagaatgcacaaatacaagatttgtgcaccatgcacaa 29076031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 264 - 310
Target Start/End: Original strand, 12521365 - 12521411
Alignment:
Q  264 ggtggcatttagcatgcacaaatgatagatttgtgcaccatgcacaa 310  Q
    |||||||||||||||||||||  || ||||||||||| |||||||||    
T  12521365 ggtggcatttagcatgcacaagggaaagatttgtgcatcatgcacaa 12521411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 264 - 310
Target Start/End: Complemental strand, 12524188 - 12524142
Alignment:
Q  264 ggtggcatttagcatgcacaaatgatagatttgtgcaccatgcacaa 310  Q
    ||||| |||||||||||||||  || |||||||||||||||||||||    
T  12524188 ggtggtatttagcatgcacaagagaaagatttgtgcaccatgcacaa 12524142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 264 - 310
Target Start/End: Original strand, 33473865 - 33473911
Alignment:
Q  264 ggtggcatttagcatgcacaaatgatagatttgtgcaccatgcacaa 310  Q
    |||||||||||| |||||||| || || |||||||||||||||||||    
T  33473865 ggtggcatttagtatgcacaagtgttaaatttgtgcaccatgcacaa 33473911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 115; Significance: 4e-58; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 340 - 585
Target Start/End: Complemental strand, 27052689 - 27052428
Alignment:
Q  340 tttacctgctagaatattttaatgtttcatattatattgtaaaatattc-atttattgtttctgctgctcacacccccctaaaaaactgtcagttatcag 438  Q
    |||||||||| |||||||||||||   |||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||  |||||||||||    
T  27052689 tttacctgctggaatattttaatgaaacatattatattgtaaaatattccatttattgtttctgctgctcacactcccctaaaaaaccatcagttatcag 27052590  T
Q  439 caataacttgtacaccccctagtaaaattgaaacatggagattagtaattca-actctttt--------------cagaatatattaattttagctttgt 523  Q
    |||||||||||| |||||||| ||||||||||||||||||| ||||||||||   ||||||              ||| | |||| | ||| ||||||||    
T  27052589 caataacttgtataccccctactaaaattgaaacatggagagtagtaattcagtttcttttcacacgtgacacaccagtaaatatcattttgagctttgt 27052490  T
Q  524 ttcccttctccttcatgcttaacattcttcttcatctccatagccacccatatttttgacat 585  Q
    ||||||||| |||||||||||||||||||||||||||||||||||| |||| || |||||||    
T  27052489 ttcccttcttcttcatgcttaacattcttcttcatctccatagccatccatgttcttgacat 27052428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 260 - 310
Target Start/End: Original strand, 37179116 - 37179166
Alignment:
Q  260 aaatggtggcatttagcatgcacaaatgatagatttgtgcaccatgcacaa 310  Q
    |||||||||||||||| ||||| |||||||| ||||||| |||||||||||    
T  37179116 aaatggtggcatttagaatgcataaatgataaatttgtgtaccatgcacaa 37179166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 264 - 310
Target Start/End: Complemental strand, 38635010 - 38634964
Alignment:
Q  264 ggtggcatttagcatgcacaaatgatagatttgtgcaccatgcacaa 310  Q
    ||||||||||||||||||||| ||||| ||||||||| |||||||||    
T  38635010 ggtggcatttagcatgcacaattgataaatttgtgcatcatgcacaa 38634964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 262 - 310
Target Start/End: Complemental strand, 8674741 - 8674693
Alignment:
Q  262 atggtggcatttagcatgcacaaatgatagatttgtgcaccatgcacaa 310  Q
    ||||| |||||||| ||||||||||| |||||||||||||||| |||||    
T  8674741 atggtagcatttaggatgcacaaatgttagatttgtgcaccatacacaa 8674693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 262 - 310
Target Start/End: Complemental strand, 51311691 - 51311643
Alignment:
Q  262 atggtggcatttagcatgcacaaatgatagatttgtgcaccatgcacaa 310  Q
    ||||||||||||||||||||||||  ||| ||||||||||||| |||||    
T  51311691 atggtggcatttagcatgcacaaagtataaatttgtgcaccatacacaa 51311643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 262 - 310
Target Start/End: Original strand, 51719435 - 51719483
Alignment:
Q  262 atggtggcatttagcatgcacaaatgatagatttgtgcaccatgcacaa 310  Q
    |||||||||||||| |||||||||| ||| ||||||||| |||||||||    
T  51719435 atggtggcatttagtatgcacaaattataaatttgtgcatcatgcacaa 51719483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 264 - 310
Target Start/End: Original strand, 10459767 - 10459813
Alignment:
Q  264 ggtggcatttagcatgcacaaatgatagatttgtgcaccatgcacaa 310  Q
    |||||||||||| ||||||||||| || ||||||||||||| |||||    
T  10459767 ggtggcatttaggatgcacaaatgttaaatttgtgcaccatacacaa 10459813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 264 - 310
Target Start/End: Original strand, 28032875 - 28032921
Alignment:
Q  264 ggtggcatttagcatgcacaaatgatagatttgtgcaccatgcacaa 310  Q
    |||||||||||| ||||||||||   |||||||||||||||||||||    
T  28032875 ggtggcatttagaatgcacaaatataagatttgtgcaccatgcacaa 28032921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 264 - 310
Target Start/End: Original strand, 48734910 - 48734956
Alignment:
Q  264 ggtggcatttagcatgcacaaatgatagatttgtgcaccatgcacaa 310  Q
    |||||||||||| ||||||||||   |||||||||||||||||||||    
T  48734910 ggtggcatttagaatgcacaaatataagatttgtgcaccatgcacaa 48734956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 264 - 310
Target Start/End: Complemental strand, 50138384 - 50138338
Alignment:
Q  264 ggtggcatttagcatgcacaaatgatagatttgtgcaccatgcacaa 310  Q
    ||||||||||| ||||||||||| ||| ||||||||| |||||||||    
T  50138384 ggtggcatttaacatgcacaaattataaatttgtgcatcatgcacaa 50138338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 264 - 300
Target Start/End: Original strand, 38634083 - 38634119
Alignment:
Q  264 ggtggcatttagcatgcacaaatgatagatttgtgca 300  Q
    ||||||||||||||||||||| ||||| |||||||||    
T  38634083 ggtggcatttagcatgcacaattgataaatttgtgca 38634119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 262 - 310
Target Start/End: Original strand, 48980703 - 48980751
Alignment:
Q  262 atggtggcatttagcatgcacaaatgatagatttgtgcaccatgcacaa 310  Q
    ||||||||||||||||||||||| | ||| | ||||||||||| |||||    
T  48980703 atggtggcatttagcatgcacaagtcataaacttgtgcaccattcacaa 48980751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 93; Significance: 6e-45; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 412 - 632
Target Start/End: Complemental strand, 41523457 - 41523222
Alignment:
Q  412 cccccctaaaaaactgtcagttatcagcaataacttgtacaccccctagtaaaattgaaacatggagattagtaattcaact-cttttcaga-------- 502  Q
    ||||||||||||||   || ||||||||||||||||||| |||||||| ||||||||||||||||||| ||||||||||  | ||||||| |            
T  41523457 cccccctaaaaaaccaccacttatcagcaataacttgtataccccctactaaaattgaaacatggagagtagtaattcagtttcttttcacacgtaaaac 41523358  T
Q  503 ------atatattaattttagctttgtttcccttctccttcatgcttaacattcttcttcatctccatagccacccatatttttgacatttccagacatc 596  Q
          | |||| | ||| | |||||||||||||||||||||||||||||||||||| ||||||||||||||||| || || ||||||||||||||||||    
T  41523357 accggtaaatatcattttgaactttgtttcccttctccttcatgcttaacattcttcctcatctccatagccacctatgttcttgacatttccagacatc 41523258  T
Q  597 ctttctcctttgtgcttaacttaaagtttttcttca 632  Q
    ||||||||||  |||||||||||||||| |||||||    
T  41523257 ctttctccttcatgcttaacttaaagttcttcttca 41523222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 340 - 475
Target Start/End: Complemental strand, 52616486 - 52616350
Alignment:
Q  340 tttacctgctagaatattttaatgtttcatattatattgtaaaatattc-atttattgtttctgctgctcacacccccctaaaaaactgtcagttatcag 438  Q
    |||||||||| |||||||||||||    ||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||   || |||||||    
T  52616486 tttacctgctggaatattttaatgaaaaatattatattgtataatattccatttattgtttctgctgctcacacccccctaaaaaaccaccacttatcag 52616387  T
Q  439 caataacttgtacaccccctagtaaaattgaaacatg 475  Q
    ||||||||||||||||||||| ||||| |||||||||    
T  52616386 caataacttgtacaccccctattaaaactgaaacatg 52616350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 340 - 487
Target Start/End: Original strand, 51846921 - 51847068
Alignment:
Q  340 tttacctgctagaatattttaatgtttcatattatattgtaaaatatt-catttattgtttctgctgctcacacccccctaaaaaactgtcagttatcag 438  Q
    |||||||||| ||||||||||||     ||||||||||| |||||||| ||||||||||||||||||||||||||| | ||||||||   || |||||||    
T  51846921 tttacctgctggaatattttaatcaaaaatattatattgaaaaatatttcatttattgtttctgctgctcacaccctc-taaaaaaccaccacttatcag 51847019  T
Q  439 caataacttgtacaccccctagtaaaattgaaacatggagattagtaat 487  Q
    |||| ||||||| |||||||| ||||||||||||||||||| |||||||    
T  51847020 caattacttgtataccccctactaaaattgaaacatggagagtagtaat 51847068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 340 - 479
Target Start/End: Original strand, 11758942 - 11759078
Alignment:
Q  340 tttacctgctagaatattttaatgtttcatattatattgtaaaatatt-catttattgtttctgctgctcacacccccctaaaaaactgtcagttatcag 438  Q
    |||||||||| ||| |||||||||   ||||| ||||||||||||||| |||||||||||||||||||||| | ||||||||||||| | || |||||||    
T  11758942 tttacctgctggaacattttaatgaaacatataatattgtaaaatattccatttattgtttctgctgctcata-ccccctaaaaaaccgccacttatcag 11759040  T
Q  439 caataacttgtacaccccctagtaaaattgaaacatggaga 479  Q
    |||| ||||||  ||||||   |||||||||||||||||||    
T  11759041 caattacttgtctaccccc---taaaattgaaacatggaga 11759078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 264 - 337
Target Start/End: Complemental strand, 31893503 - 31893430
Alignment:
Q  264 ggtggcatttagcatgcacaaatgatagatttgtgcaccatgcacaattttcccatggaaggacagctggcggt 337  Q
    |||||||||||| ||||||||||   ||||||||||||||||||||||||   ||| ||||||||| |||||||    
T  31893503 ggtggcatttagaatgcacaaatacaagatttgtgcaccatgcacaatttgtgcattgaaggacaggtggcggt 31893430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 351 - 411
Target Start/End: Complemental strand, 29223321 - 29223259
Alignment:
Q  351 gaatattttaatgtttcatattatattgtaaaatattc--atttattgtttctgctgctcaca 411  Q
    |||||||||||||   ||||||||||||||||||||||  ||||||| |||||||||||||||    
T  29223321 gaatattttaatgaaacatattatattgtaaaatattccaatttattatttctgctgctcaca 29223259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 263 - 304
Target Start/End: Complemental strand, 34134159 - 34134118
Alignment:
Q  263 tggtggcatttagcatgcacaaatgatagatttgtgcaccat 304  Q
    ||||||||||||||||||||||||| || |||||||||||||    
T  34134159 tggtggcatttagcatgcacaaatgttaaatttgtgcaccat 34134118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 516 - 557
Target Start/End: Original strand, 51847120 - 51847161
Alignment:
Q  516 agctttgtttcccttctccttcatgcttaacattcttcttca 557  Q
    |||||||||||||| ||||||||||||||||||| |||||||    
T  51847120 agctttgtttccctgctccttcatgcttaacatttttcttca 51847161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 368 - 410
Target Start/End: Complemental strand, 41523517 - 41523474
Alignment:
Q  368 atattatattgtaaaatattc-atttattgtttctgctgctcac 410  Q
    ||||||||||||||||||||| ||||||||||||| ||||||||    
T  41523517 atattatattgtaaaatattccatttattgtttctactgctcac 41523474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 264 - 310
Target Start/End: Original strand, 11758856 - 11758902
Alignment:
Q  264 ggtggcatttagcatgcacaaatgatagatttgtgcaccatgcacaa 310  Q
    |||||||||||||||||||||   | |||||||||||||||||||||    
T  11758856 ggtggcatttagcatgcacaaggaaaagatttgtgcaccatgcacaa 11758902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 264 - 310
Target Start/End: Original strand, 35441776 - 35441822
Alignment:
Q  264 ggtggcatttagcatgcacaaatgatagatttgtgcaccatgcacaa 310  Q
    ||||||||||||  |||| |||||||| |||||||||||||||||||    
T  35441776 ggtggcatttagggtgcataaatgataaatttgtgcaccatgcacaa 35441822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 264 - 310
Target Start/End: Complemental strand, 35442614 - 35442568
Alignment:
Q  264 ggtggcatttagcatgcacaaatgatagatttgtgcaccatgcacaa 310  Q
    |||||||||||| |||||||||| ||| ||||||||||||| |||||    
T  35442614 ggtggcatttaggatgcacaaataataaatttgtgcaccatacacaa 35442568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 270 - 310
Target Start/End: Original strand, 44308430 - 44308470
Alignment:
Q  270 atttagcatgcacaaatgatagatttgtgcaccatgcacaa 310  Q
    |||||| ||||||||||| |||||||||||||||| |||||    
T  44308430 atttaggatgcacaaatgttagatttgtgcaccatacacaa 44308470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 266 - 310
Target Start/End: Original strand, 49085300 - 49085344
Alignment:
Q  266 tggcatttagcatgcacaaatgatagatttgtgcaccatgcacaa 310  Q
    |||||||||| |||||||| || || |||||||||||||||||||    
T  49085300 tggcatttaggatgcacaagtgttaaatttgtgcaccatgcacaa 49085344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 90; Significance: 4e-43; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 527 - 632
Target Start/End: Original strand, 15743163 - 15743268
Alignment:
Q  527 ccttctccttcatgcttaacattcttcttcatctccatagccacccatatttttgacatttccagacatcctttctcctttgtgcttaacttaaagtttt 626  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |    
T  15743163 ccttctccttcatgcttaacattcttcttcatctccatagccatccatgtttttgacatttctagacatcctttctcctttgtgcttaacttaaagttct 15743262  T
Q  627 tcttca 632  Q
    ||||||    
T  15743263 tcttca 15743268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 351 - 488
Target Start/End: Original strand, 13736611 - 13736746
Alignment:
Q  351 gaatattttaatgtttcatattatattgtaaaatattc-atttattgtttctgctgctcacacccccctaaaaaactgtcagttatcagcaataacttgt 449  Q
    |||||||||||||   |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||   || ||||||||||||||||||    
T  13736611 gaatattttaatgaaacatattatattgtaaaatattccatttattgtttctgctgctcacacccccctaaaaaaccaccacttatcagcaataacttgt 13736710  T
Q  450 acaccccctagtaaaattgaaacatggagattagtaatt 488  Q
    | ||||||   ||||||||||||||||||| ||||||||    
T  13736711 ataccccc---taaaattgaaacatggagagtagtaatt 13736746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 340 - 487
Target Start/End: Complemental strand, 26889350 - 26889203
Alignment:
Q  340 tttacctgctagaatattttaatgtttcatattatattgtaaaatattc-atttattgtttctgctgctcacacccccctaaaaaactgtcagttatcag 438  Q
    |||||||||| ||||||||||||     ||||||||||||||||||||| ||||||||||||||| |||||||||||| ||||||||   || |||||||    
T  26889350 tttacctgctggaatattttaatcaaaaatattatattgtaaaatattccatttattgtttctgccgctcacaccccc-taaaaaaccaccacttatcag 26889252  T
Q  439 caataacttgtacaccccctagtaaaattgaaacatggagattagtaat 487  Q
    |||| ||||||| |||||||| ||||||||||||||||||| |||||||    
T  26889251 caattacttgtataccccctactaaaattgaaacatggagagtagtaat 26889203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 516 - 557
Target Start/End: Complemental strand, 26889151 - 26889110
Alignment:
Q  516 agctttgtttcccttctccttcatgcttaacattcttcttca 557  Q
    |||||||||||||||||||||||||||||||||| |||||||    
T  26889151 agctttgtttcccttctccttcatgcttaacatttttcttca 26889110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 566 - 632
Target Start/End: Original strand, 13736814 - 13736880
Alignment:
Q  566 gccacccatatttttgacatttccagacatcctttctcctttgtgcttaacttaaagtttttcttca 632  Q
    ||||||||| || ||||||||| |||| || ||||||||||  |||||||||||||||| |||||||    
T  13736814 gccacccatgttcttgacattttcagatatgctttctccttcatgcttaacttaaagttcttcttca 13736880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 264 - 337
Target Start/End: Original strand, 43259800 - 43259873
Alignment:
Q  264 ggtggcatttagcatgcacaaatgatagatttgtgcaccatgcacaattttcccatggaaggacagctggcggt 337  Q
    |||||||||||| ||||||||||   | ||||||||||||||||||||||   ||| ||||||||| |||||||    
T  43259800 ggtggcatttagaatgcacaaatacaaaatttgtgcaccatgcacaatttatgcattgaaggacaggtggcggt 43259873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 264 - 304
Target Start/End: Complemental strand, 28804220 - 28804180
Alignment:
Q  264 ggtggcatttagcatgcacaaatgatagatttgtgcaccat 304  Q
    ||||||||||| ||||||||||||||| |||||||||||||    
T  28804220 ggtggcatttaacatgcacaaatgataaatttgtgcaccat 28804180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 263 - 307
Target Start/End: Complemental strand, 47326315 - 47326271
Alignment:
Q  263 tggtggcatttagcatgcacaaatgatagatttgtgcaccatgca 307  Q
    ||||||||||||| || ||||||||  ||||||||||||||||||    
T  47326315 tggtggcatttagtatacacaaatgcaagatttgtgcaccatgca 47326271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 263 - 307
Target Start/End: Complemental strand, 47341111 - 47341067
Alignment:
Q  263 tggtggcatttagcatgcacaaatgatagatttgtgcaccatgca 307  Q
    ||||||||||||| || ||||||||  ||||||||||||||||||    
T  47341111 tggtggcatttagtatacacaaatgcaagatttgtgcaccatgca 47341067  T

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Target: scaffold0604 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0604
Description:

Target: scaffold0604; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 265 - 310
Target Start/End: Original strand, 7217 - 7262
Alignment:
Q  265 gtggcatttagcatgcacaaatgatagatttgtgcaccatgcacaa 310  Q
    ||||||||||| |||||||||||  |||||||||||||||||||||    
T  7217 gtggcatttagtatgcacaaatgtaagatttgtgcaccatgcacaa 7262  T

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Target: scaffold0027 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 262 - 310
Target Start/End: Original strand, 18020 - 18068
Alignment:
Q  262 atggtggcatttagcatgcacaaatgatagatttgtgcaccatgcacaa 310  Q
    |||||||||||||| |||||||||| ||| ||||||||| |||||||||    
T  18020 atggtggcatttagtatgcacaaattataaatttgtgcatcatgcacaa 18068  T

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Target: scaffold0047 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 264 - 310
Target Start/End: Original strand, 50417 - 50463
Alignment:
Q  264 ggtggcatttagcatgcacaaatgatagatttgtgcaccatgcacaa 310  Q
    ||||||||||| ||||||||||| ||| ||||||||| |||||||||    
T  50417 ggtggcatttaacatgcacaaattataaatttgtgcatcatgcacaa 50463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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