View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5318_high_3 (Length: 340)
Name: NF5318_high_3
Description: NF5318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5318_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 38 - 324
Target Start/End: Original strand, 24881631 - 24881918
Alignment:
| Q |
38 |
tcataaatcatataacatatttgcttc-tttctacttctactctccctcacattagttcaatctccatcatcaagcttggctacaacatagtacctcgga |
136 |
Q |
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| T |
24881631 |
tcataaatcatataacatatttgcttcctttctacttctactctccctcacattagttcaatctccatcatcaagcttggctacaacatagtacctcaga |
24881730 |
T |
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| Q |
137 |
tattttagggtcttaacattttataaggcccaccatcaattttccttttatctttcgaaaaaatgtttgctcctctttagtccatcgttaatattggcaa |
236 |
Q |
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||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| ||||||||||||||||||| |
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| T |
24881731 |
tattttagggtattaaaattttataaggcccaccatcaattttccttttatctttcgaaaaaatgttagctactctttagcccatcgttaatattggcaa |
24881830 |
T |
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| Q |
237 |
ttcagcaatgcaaatctcaactctcattgttctcaagaccaactaccatttatatttcaaatatgaaattaatggatccactatttta |
324 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24881831 |
ttcagcaatgcaaatctcaactctcattgttctcaagaccaactaccatttatatttcaaatatgaaattaatggatccactatttta |
24881918 |
T |
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