View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5318_high_5 (Length: 255)

Name: NF5318_high_5
Description: NF5318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5318_high_5
NF5318_high_5
[»] chr3 (2 HSPs)
chr3 (42-120)||(43485902-43485978)
chr3 (124-179)||(43485796-43485851)
[»] chr2 (2 HSPs)
chr2 (54-113)||(44750533-44750591)
chr2 (200-243)||(44750650-44750693)


Alignment Details
Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 42 - 120
Target Start/End: Complemental strand, 43485978 - 43485902
Alignment:
Q  42 caacataaggaaataaggaaaggctattacacagtttttcaaactgtactacaaacattgaaagagaaattaaatcatt 120  Q
    |||||||||||||||||||||||||| ||||  ||||||||||||||||| ||||||||||||||||||||||||||||    
T  43485978 caacataaggaaataaggaaaggctaataca--gtttttcaaactgtactgcaaacattgaaagagaaattaaatcatt 43485902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 124 - 179
Target Start/End: Complemental strand, 43485851 - 43485796
Alignment:
Q  124 ccatcaagatgcatttaatgctcctgatttccttttatctttaagtaggagcttca 179  Q
    ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||    
T  43485851 ccatcaagatgcatttaatgcacctgatttccttttatctttgagtaggagcttca 43485796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 54 - 113
Target Start/End: Original strand, 44750533 - 44750591
Alignment:
Q  54 ataaggaaaggctattacacagtttttcaaactgtactacaaacattgaaagagaaatta 113  Q
    ||||||||||||||||||| | |||||||||||||||| |||||||||||||| ||||||    
T  44750533 ataaggaaaggctattacaga-tttttcaaactgtactgcaaacattgaaagataaatta 44750591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 200 - 243
Target Start/End: Original strand, 44750650 - 44750693
Alignment:
Q  200 gcaagcagaagtggagtaggagccaaactcaacacagaaaaata 243  Q
    ||||||||||||| |||||||||| ||||||||| |||||||||    
T  44750650 gcaagcagaagtgaagtaggagcctaactcaacaaagaaaaata 44750693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University