View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5318_low_2 (Length: 623)
Name: NF5318_low_2
Description: NF5318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5318_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 323; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 212 - 573
Target Start/End: Complemental strand, 50785537 - 50785174
Alignment:
| Q |
212 |
ataagtatttctatcattggttgtgtcacactacgctggtaatgcaaatacagttttgtctaagaaaatatcaatccgcaccctcctttgtccctatgga |
311 |
Q |
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| T |
50785537 |
ataagtatttctatcattggttgtgtcacactacgctggtaatgcaaatacggttttgtctaagaaaatatcaatccgcaccttc-tttgtccctatgga |
50785439 |
T |
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| Q |
312 |
ttcagttttgctacaaaaagtcccaaccttctatttgttccgttctctcttttgcttatcaata---catttgaatgggtcattgaatcaatgtcggtat |
408 |
Q |
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| T |
50785438 |
ttcagttttgctacaaaaagtcccaaccttctatttgttccgttctctcttttgcttatcaataatacatttgaatgggtcattgaatcaatgtcggtat |
50785339 |
T |
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| Q |
409 |
tacacatatcaatctataattgtattagattgatagtgtgcatccttttatgatcataattaagacatcacttaaaaggacatcctcttaaaataaatgc |
508 |
Q |
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| T |
50785338 |
tacacatatcaatctacaattgtattagattgatagtgtgcatcattttatgatcataattaagacatcacttaaaaggacatcctcttaaaataaatgc |
50785239 |
T |
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| Q |
509 |
atccatcaaccatcaagcaagtaaacgataagttaaatgaatacgtacaatggatttagttcagt |
573 |
Q |
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| T |
50785238 |
atccatcaaccatcaagcaagtaaacgataagttaaatgaatacgtacaattgatttagttcagt |
50785174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 108 - 210
Target Start/End: Complemental strand, 50785759 - 50785657
Alignment:
| Q |
108 |
cttatgtgatttatgggttattgatgtgtataatctcaaattagcaacaaatgttttatgtataacaacgcagagaacatagaaaaatcattttgaacta |
207 |
Q |
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| T |
50785759 |
cttatgtgatttatgggttattgatgtgtataatatcaaattagcaacaaatgttttatgtataacaacgcagagaacatagaaaaatcattttgaacta |
50785660 |
T |
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| Q |
208 |
tga |
210 |
Q |
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| T |
50785659 |
tga |
50785657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 285 - 360
Target Start/End: Original strand, 50786105 - 50786180
Alignment:
| Q |
285 |
atccgcaccctcctttgtccctatggattcagttttgctacaaaaagtcccaaccttctatttgttccgttctctc |
360 |
Q |
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| T |
50786105 |
atccgcaccctcatttgtccgtatggattcacttttgccacaaaaagtcccaaccttctatttgttccgttctctc |
50786180 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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