View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5318_low_4 (Length: 337)
Name: NF5318_low_4
Description: NF5318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5318_low_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 3 - 324
Target Start/End: Original strand, 40627029 - 40627350
Alignment:
| Q |
3 |
ataagaatagaggatcgtgtatgaatagatcgaatttgagtgatggatgagagagtaagtaaacctaaaacctctttcttaacaacaatagcagagaatg |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40627029 |
ataagaatagaggatcgtgtatgaatagatcgaatttgagtgatggatgagagagtaagtaaacctaaaacctctttcttaacaacaatagcagagaatg |
40627128 |
T |
|
| Q |
103 |
aacgatcgatgatagaatagaagggaacgaagatgagagggatgttactttaccttagctgtgaaaatagagaaaaagagggagaattgagaatccgaat |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
40627129 |
aacgatcgatgatagaatagaagggaacgaagatgagagggatgttactttaccttagctgtgaaaatagagaaaaagagggagaattgaaaatccgaat |
40627228 |
T |
|
| Q |
203 |
tgcgaagtgatttcgatcgaattagaaagaaagaaaacaagtgagatgagaattttagagaagagaataatgaaaagcactcaattgaagaccgactttt |
302 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40627229 |
tgcgaagcgatttcgatcgaattagaaagaaagaaaacaagtgagatgagaattttagagaagagaataatgaaaagcactcaattgaagaccgactttt |
40627328 |
T |
|
| Q |
303 |
ctttctttatttgttgcttctg |
324 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
40627329 |
ctttctttatttgttgcttctg |
40627350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University