View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5318_low_5 (Length: 336)

Name: NF5318_low_5
Description: NF5318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5318_low_5
NF5318_low_5
[»] chr2 (1 HSPs)
chr2 (74-321)||(36377036-36377281)
[»] chr6 (2 HSPs)
chr6 (16-74)||(33349278-33349336)
chr6 (16-72)||(21985182-21985238)
[»] chr3 (2 HSPs)
chr3 (16-74)||(2249890-2249948)
chr3 (16-74)||(20789227-20789285)
[»] chr1 (4 HSPs)
chr1 (16-72)||(22539419-22539475)
chr1 (16-74)||(21468796-21468854)
chr1 (16-74)||(15530255-15530313)
chr1 (16-74)||(19103829-19103888)
[»] chr8 (2 HSPs)
chr8 (16-74)||(359961-360019)
chr8 (16-74)||(23684160-23684218)
[»] scaffold0029 (1 HSPs)
scaffold0029 (16-63)||(14464-14511)


Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 74 - 321
Target Start/End: Complemental strand, 36377281 - 36377036
Alignment:
Q  74 tacgtttggattgacttttggttatgtattctcccatctcgatgtaaattcaccgtgaatctagtgaagctaaaaattaaagcttctaataaatgtgtgt 173  Q
    ||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  36377281 tacgtttggattgacttttggttacttattctcccatctcgatgtaaattcaccgtgaatctagtgaagctaaaaattaaagcttctaataaatgtgtg- 36377183  T
Q  174 tttggtgaagagataactatggtttcaaacaattagtttaaaataaacacatacattatttattcaataagtctaaaaaataattttttcattataattg 273  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||    
T  36377182 tttggtgaagagataactatggtttcaaacaattagtttaaaataaacacatacattagttattcaataagtctaaaaaataatttttt-attataattg 36377084  T
Q  274 agatcaaagagaatatgtaccattgttaattcaatatctttcatttat 321  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  36377083 agatcaaagagaatatgtaccattgttaattcaatatctttcatttat 36377036  T

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Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 16 - 74
Target Start/End: Complemental strand, 33349336 - 33349278
Alignment:
Q  16 acatcatcctaatgcacctaagatcacttaagtcatatggagccccccaatattgcact 74  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  33349336 acattatcctaatgcacctaagatcactgaagtcatatggagccccccaatattgcact 33349278  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 21985182 - 21985238
Alignment:
Q  16 acatcatcctaatgcacctaagatcacttaagtcatatggagccccccaatattgca 72  Q
    |||| ||||||||| ||||||||||||| |||||||||||||||| |||||||||||    
T  21985182 acattatcctaatgaacctaagatcactgaagtcatatggagccctccaatattgca 21985238  T

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Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 16 - 74
Target Start/End: Original strand, 2249890 - 2249948
Alignment:
Q  16 acatcatcctaatgcacctaagatcacttaagtcatatggagccccccaatattgcact 74  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  2249890 acattatcctaatgcacctaagatcactgaagtcatatggagccccccaatattgcact 2249948  T

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Target: chr3; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 16 - 74
Target Start/End: Original strand, 20789227 - 20789285
Alignment:
Q  16 acatcatcctaatgcacctaagatcacttaagtcatatggagccccccaatattgcact 74  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  20789227 acattatcctaatgcacctaagatcactgaagtcatatggagccccccaatattgcact 20789285  T

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Target: chr1 (Bit Score: 49; Significance: 5e-19; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 22539419 - 22539475
Alignment:
Q  16 acatcatcctaatgcacctaagatcacttaagtcatatggagccccccaatattgca 72  Q
    |||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||    
T  22539419 acatcatcctaatgcacctaggatcactgaagtcatatggagccccccaatattgca 22539475  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 16 - 74
Target Start/End: Complemental strand, 21468854 - 21468796
Alignment:
Q  16 acatcatcctaatgcacctaagatcacttaagtcatatggagccccccaatattgcact 74  Q
    |||| |||||||||||| |||||||||| ||||||||||||||||||||||||||||||    
T  21468854 acattatcctaatgcacataagatcactgaagtcatatggagccccccaatattgcact 21468796  T

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Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 74
Target Start/End: Original strand, 15530255 - 15530313
Alignment:
Q  16 acatcatcctaatgcacctaagatcacttaagtcatatggagccccccaatattgcact 74  Q
    |||||||||||||||||||||||| ||| |||||||||||||||||  |||||||||||    
T  15530255 acatcatcctaatgcacctaagataactgaagtcatatggagccccaaaatattgcact 15530313  T

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Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 74
Target Start/End: Complemental strand, 19103888 - 19103829
Alignment:
Q  16 acatcatcctaatgcacctaagatcacttaagtcatatgga-gccccccaatattgcact 74  Q
    |||| ||||||||||||||||||||||| ||||||||||||  |||||||||||||||||    
T  19103888 acattatcctaatgcacctaagatcactgaagtcatatggaccccccccaatattgcact 19103829  T

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Target: chr8 (Bit Score: 47; Significance: 8e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 16 - 74
Target Start/End: Original strand, 359961 - 360019
Alignment:
Q  16 acatcatcctaatgcacctaagatcacttaagtcatatggagccccccaatattgcact 74  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||    
T  359961 acattatcctaatgcacctaagatcactgaagtcatatggagcccctcaatattgcact 360019  T

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Target: chr8; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 16 - 74
Target Start/End: Original strand, 23684160 - 23684218
Alignment:
Q  16 acatcatcctaatgcacctaagatcacttaagtcatatggagccccccaatattgcact 74  Q
    |||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||||    
T  23684160 acatcatcctaatgcacctaagataactgaagtcatatggagccccacaatattgcact 23684218  T

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Target: scaffold0029 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 63
Target Start/End: Complemental strand, 14511 - 14464
Alignment:
Q  16 acatcatcctaatgcacctaagatcacttaagtcatatggagcccccc 63  Q
    |||| ||||||||||||||||||||||| |||||||||||| ||||||    
T  14511 acattatcctaatgcacctaagatcactgaagtcatatggatcccccc 14464  T

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