View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5319-Insertion-1 (Length: 1111)
Name: NF5319-Insertion-1
Description: NF5319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5319-Insertion-1 |
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| [»] scaffold0370 (1 HSPs) |
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Alignment Details
Target: scaffold0370 (Bit Score: 906; Significance: 0; HSPs: 1)
Name: scaffold0370
Description:
Target: scaffold0370; HSP #1
Raw Score: 906; E-Value: 0
Query Start/End: Original strand, 7 - 1047
Target Start/End: Original strand, 12643 - 13690
Alignment:
| Q |
7 |
aaaatcatcattatatttctttcattgattacattttcctaatctgcgtataattgtgaaatgctacagttattgcgtaacgggggtagtatattcttta |
106 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
12643 |
aaaatcatcattatatttctttcattgattacattttcctaatctgcgtataattgtgaaatgctatagttattgcgtaacgggggtagtatattcttta |
12742 |
T |
|
| Q |
107 |
ctcggaaagttaaaaacttggaggagatgattagagggaattatttgaatgatcggcagaagctcgtgatagaaattgaacaattccaaatccaacatat |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12743 |
ctcggaaagttaaaaacttggaggagatgattagagggaattatttgaatgaccggcagaagctcgtgatagaaattgaacaattccaaatccaacatat |
12842 |
T |
|
| Q |
207 |
ggaaagagcttgcaagtatgactccttgaagaaaagtataaaacaccaaatcaaggtaacttacaattggcttttgacttgtcaagaacagcttattcat |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12843 |
ggaaagagcttgcaagtatgactccttgaagaaaagtataaaacaccaaatcaaggtaacttacaattggcttttgacttgtcaagaacagcttattcat |
12942 |
T |
|
| Q |
307 |
gtcttaaaggtgttatcagtgagtgtgacagatattttctatttatggtagcttctttctgatgacaattctttgaaaaacaaaagagagtggatggaat |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
12943 |
gtcttaaaggtgttatcagtgagtgtgacagatattttctatttatggtagcttctttgtgatgacaattctttgaaaaacaaaagagagtggatggaat |
13042 |
T |
|
| Q |
407 |
ttgggaccagatcaattagcctcggagtagaagccaaaaacggaaaattatattcattgagggaaaaattgaatcagaagtataagaaaaagtatgaagc |
506 |
Q |
| |
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||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |
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| T |
13043 |
ttgggaccagatcaattagccccggagtagaagccataaacggaaaattatattcattgagagaaaaattgaatcagaagtataacaaaaagtatgaagc |
13142 |
T |
|
| Q |
507 |
aaagcaaaggattttgaaattggaagagttgtatcatgaggatgtatgttaaaaactacaatctatgcatttaatataattgcatttgcactcagaagta |
606 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13143 |
aaagcaaaggattttgaaattgaaagagttgtatcatgagaatgtatgttaaaaactacaatctatgcatttaatataattgcatttgcactcagaagta |
13242 |
T |
|
| Q |
607 |
gaagtccatgatccgttccgttttcacgattgagacggcgatttaactggtgtcagtttgataaaatgtggggaaaaaattgagttaaattttgagggac |
706 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
13243 |
gaagtccatgatccgctccgttttcacgattgagacggcgatttaactggtgtcagtttgataaaatgtgggaaaaaaattgagttaaattttgagggac |
13342 |
T |
|
| Q |
707 |
atgttttctttctctgtctttgaaaaacttgcaccaatcaggtcattgtcttaattagatgttacaacaacgagatcatgaatttctactttaagagact |
806 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13343 |
atgttttctttctttgtctttgaaaaacttgcaccaatcaggtcattgtcttaattagatgttacaacaacgagatcatgaatttctactttaagagact |
13442 |
T |
|
| Q |
807 |
gagattagttatcgttggatttttagatgattttaagttcggtccacagtggccccacaaaacatgcatgtagaacttgatcttatatgttactttttca |
906 |
Q |
| |
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||||||||||||||||||||||||||| ||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
13443 |
gagattagttatcgttggatttttagacgattttaagttcggtccacagcgg-cccaccaaacatgcatgtagaacttgatcttatatgttactttttca |
13541 |
T |
|
| Q |
907 |
attccagattctcaactattacaagtattgttcacttataa--taagtacatcaactgagtgaag-aaaagatgt-acagtccttgatgagatgtcaagt |
1002 |
Q |
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|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||| |
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| T |
13542 |
attccagaatctcaactattacaagtattgttcacttataaataaagtacatcaactgagtgaagaaaaagatgtaacactccttgatgagatgtcaagt |
13641 |
T |
|
| Q |
1003 |
tcagaggtt-gtaattgta-tag-tacat-gtatttatttcactaaaaa |
1047 |
Q |
| |
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||||||||| ||||||||| ||| ||||| |||||||||||||| |||| |
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| T |
13642 |
tcagaggttggtaattgtattagttacatggtatttatttcacttaaaa |
13690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 63; Significance: 8e-27; HSPs: 11)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 8e-27
Query Start/End: Original strand, 616 - 757
Target Start/End: Original strand, 38691865 - 38692007
Alignment:
| Q |
616 |
gatccgttccgttttcacgattgagacggcgatttaactggtgtcagtttgataaaatgtggggaaaaaattgagttaaattttgagggacatgttttct |
715 |
Q |
| |
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|||||| | |||||||||||||||||||| ||||||| |||||||||||| | | || | ||| ||| || | |||||||||||||||||||| ||| |
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| T |
38691865 |
gatccgcttcgttttcacgattgagacggtgatttaattggtgtcagtttaaaagaacgagggaaaacaaattagttaaattttgagggacatatttgta |
38691964 |
T |
|
| Q |
716 |
ttctct-gtctttgaaaaacttgcaccaatcaggtcattgtct |
757 |
Q |
| |
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|||||| |||||||||||||||| ||||||||||||||||||| |
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| T |
38691965 |
ttctctagtctttgaaaaacttgtaccaatcaggtcattgtct |
38692007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 897 - 1009
Target Start/End: Original strand, 38692058 - 38692175
Alignment:
| Q |
897 |
tactttttcaattccagattctcaactattacaagtattgttcacttataa--taagtacatcaactgagtgaag--aaaagatgt-acagtccttgatg |
991 |
Q |
| |
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||||||||||||| |||||||| | |||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||| | ||||||||||| |
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| T |
38692058 |
tactttttcaattgtagattctccattattacaagtattgttcactaataaataaagtacatcaactgagtgaagaaaaaagatgtaagagtccttgatg |
38692157 |
T |
|
| Q |
992 |
agatgtcaagttcagagg |
1009 |
Q |
| |
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|||||||||||||||||| |
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| T |
38692158 |
agatgtcaagttcagagg |
38692175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 434 - 590
Target Start/End: Original strand, 38638009 - 38638168
Alignment:
| Q |
434 |
tagaagccaaaaacggaaaattatattcattgagggaaaaattgaatcagaagtataagaaaaagtatgaagcaaagcaaaggattttgaaattggaaga |
533 |
Q |
| |
|
||||||| | |||| || |||||||||| ||||| |||||||||| ||||| ||||||||||| |||||||| | |||||||||||||||||| || | |
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| T |
38638009 |
tagaagctataaacagagaattatattctttgagagaaaaattgacagagaagcataagaaaaaggatgaagcatatcaaaggattttgaaattgaaaaa |
38638108 |
T |
|
| Q |
534 |
gttgtatcatgaggatgta---tgttaaaaactacaatctatgcatttaatataattgca |
590 |
Q |
| |
|
||| |||| ||||| ||| | || ||||| | |||||||| |||| ||||||||||| |
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|
| T |
38638109 |
attgcatcacgaggaggtaatgtttttaaaaccataatctatgaatttgatataattgca |
38638168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 296 - 350
Target Start/End: Original strand, 38589744 - 38589798
Alignment:
| Q |
296 |
agcttattcatgtcttaaaggtgttatcagtgagtgtgacagatattttctattt |
350 |
Q |
| |
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| T |
38589744 |
agcttattcatgtcttaaaggtgttatcaaagagtctgatagatattttctattt |
38589798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 161 - 217
Target Start/End: Original strand, 38633673 - 38633729
Alignment:
| Q |
161 |
ggcagaagctcgtgatagaaattgaacaattccaaatccaacatatggaaagagctt |
217 |
Q |
| |
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||||||||||| ||| ||||||||||||||| ||||| ||| ||||||||||||||| |
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|
| T |
38633673 |
ggcagaagctcctgagagaaattgaacaatttcaaattcaatatatggaaagagctt |
38633729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 166 - 213
Target Start/End: Original strand, 38690357 - 38690404
Alignment:
| Q |
166 |
aagctcgtgatagaaattgaacaattccaaatccaacatatggaaaga |
213 |
Q |
| |
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|||||||||||||||||||||||||| ||| || |||||||||||||| |
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| T |
38690357 |
aagctcgtgatagaaattgaacaatttcaagtcaaacatatggaaaga |
38690404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 223 - 350
Target Start/End: Original strand, 38637796 - 38637921
Alignment:
| Q |
223 |
tatgactccttgaagaaaagtataaaacaccaaatcaaggtaacttacaattggcttttgac-ttgtcaagaacagcttattcatgtc--ttaaaggtgt |
319 |
Q |
| |
|
||||| |||||||||||| ||||| || || |||||||||||||||| ||||||| |||||| |||| | ||||||||| | || |||||||||| |
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| T |
38637796 |
tatgaatccttgaagaaacgtatagaagacaaaatcaaggtaacttataattggc-tttgactttgt----accagcttatttacttcatttaaaggtgt |
38637890 |
T |
|
| Q |
320 |
tatcagtgagtgtgacagatattttctattt |
350 |
Q |
| |
|
||||| ||||||||||| || |||||||||| |
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|
| T |
38637891 |
tatcaatgagtgtgacatatgttttctattt |
38637921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 295 - 350
Target Start/End: Original strand, 38690512 - 38690567
Alignment:
| Q |
295 |
cagcttattcatgtcttaaaggtgttatcagtgagtgtgacagatattttctattt |
350 |
Q |
| |
|
||||||||||||||||| ||| |||||||| |||| ||||||||||||| ||||| |
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|
| T |
38690512 |
cagcttattcatgtctttaagttgttatcaaagagtatgacagatattttatattt |
38690567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 450 - 528
Target Start/End: Original strand, 38690647 - 38690725
Alignment:
| Q |
450 |
aaaattatattcattgagggaaaaattgaatcagaagtataagaaaaagtatgaagcaaagcaaaggattttgaaattg |
528 |
Q |
| |
|
|||||||||||| ||||| | |||||||| ||||| ||||||| ||| |||||||| | ||||||||||| |||||| |
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| T |
38690647 |
aaaattatattctttgagtgcaaaattgatagagaagcataagaataaggatgaagcatatcaaaggattttcaaattg |
38690725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 223 - 260
Target Start/End: Original strand, 38589668 - 38589705
Alignment:
| Q |
223 |
tatgactccttgaagaaaagtataaaacaccaaatcaa |
260 |
Q |
| |
|
||||||||||||||||||| ||||||| |||||||||| |
|
|
| T |
38589668 |
tatgactccttgaagaaaattataaaagaccaaatcaa |
38589705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 886 - 927
Target Start/End: Original strand, 38691104 - 38691145
Alignment:
| Q |
886 |
atcttatatgttactttttcaattccagattctcaactatta |
927 |
Q |
| |
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||||||||||||| |||||||| | ||||||||||||||||| |
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| T |
38691104 |
atcttatatgttaatttttcaactgcagattctcaactatta |
38691145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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