View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5319_low_2 (Length: 422)
Name: NF5319_low_2
Description: NF5319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5319_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 1 - 404
Target Start/End: Original strand, 54728752 - 54729155
Alignment:
| Q |
1 |
ggaggagtgtctggttaatatagttgatttggttttcttgttgattgtttggtgagtgacaatcaatatttatggtgtaaagagaaggtgagccacaaat |
100 |
Q |
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| T |
54728752 |
ggaggagtgtctggttaatatagttgatttggttttcttgttgattgtttggtgagtgacaatcaatatttatggtgtaaagagaaggtgagccacaaat |
54728851 |
T |
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| Q |
101 |
agctttgtcctatggctagggacaaactttaattgttttggtggttccaagtgatccagcgttaattatcttatctcaatttgtccctatcttttgaann |
200 |
Q |
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| T |
54728852 |
agctttgtcctgtgactagggacaaacttgaattgttttggtggttccaagtgatccagcgttaattatcttatctcaatttgtccctatcttttgaatt |
54728951 |
T |
|
| Q |
201 |
nnnnncatcatttagttatcttgctttaggaagagaaggatgtgctaatatatatattccatgcagaaaaatgttttcaagtaaaattcagtaacttgct |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| |
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| T |
54728952 |
tttttcatcatttagttatcttgctttaggaagagaaggatgtgctaatatatatattccatgcagaaaaatgttttgaagtaaaattgagtaacttgct |
54729051 |
T |
|
| Q |
301 |
tagaaatgaatgagcgtagtagttctcaacagtgtttattattctacttgtgagaagcaaggtgaataatttattcattttgtcaaagtagaataataaa |
400 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54729052 |
tagaaatgaatgatcgtagtagttctcaacagtgtttattattctacttgtcagaagcaaggtgaataatttattcattttgtcaaagtagaataataaa |
54729151 |
T |
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| Q |
401 |
cggt |
404 |
Q |
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|||| |
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| T |
54729152 |
cggt |
54729155 |
T |
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