View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5319_low_3 (Length: 416)
Name: NF5319_low_3
Description: NF5319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5319_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 194 - 406
Target Start/End: Complemental strand, 41133045 - 41132833
Alignment:
| Q |
194 |
ccgcctctaacttaaacagatatgtaagcgtacacaagaacacaaacaattgatcatagttcggctaattgtgtctatgtctctgatcgcaaagccgtag |
293 |
Q |
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| T |
41133045 |
ccgcctctaacttaaacagatatgtaagcgtacacaaaaacacaaacaattgatcatagttcggttaattgtgtctatgtctctgatcgcaaagccgtag |
41132946 |
T |
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| Q |
294 |
tttttctatcatgtaatgtaatgcttagggttatagagtacgaatgtaatgctacgtttaaatactacattcgagcgtctggtcacttgtcaacgaaata |
393 |
Q |
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| T |
41132945 |
tttttctatcatgtaatgtaatgcttagggttatagagtacgaatgtaatgctacgtttaaatactacattcgagcgtctggtcacttgtcaacgaaata |
41132846 |
T |
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| Q |
394 |
ggatgtgggaacc |
406 |
Q |
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| T |
41132845 |
ggatgtgggaacc |
41132833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 125; Significance: 3e-64; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 4182961 - 4182804
Alignment:
| Q |
1 |
cttaggtccagcgaggtcaaattccattttgattttcattgttgcaataaattatgacataacatattttttaaaaattaccttttaattaactacttgt |
100 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
4182961 |
cttaggtccagcgaggtccaattccattttgattttcattgttgcaataaattatgacataacatatttttttaaaattaccttttaattaactacttgt |
4182862 |
T |
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| Q |
101 |
agtcattaaaaaattccatttcagaatctagnnnnnnncccctctcattgtcttgaaa |
158 |
Q |
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| T |
4182861 |
agtcattaaaaaattccatttcacaatctagtttttttcccctctcattgtcttgaaa |
4182804 |
T |
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