View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5320-Insertion-2 (Length: 734)
Name: NF5320-Insertion-2
Description: NF5320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5320-Insertion-2 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 649; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 649; E-Value: 0
Query Start/End: Original strand, 7 - 734
Target Start/End: Complemental strand, 50448441 - 50447711
Alignment:
| Q |
7 |
atatatagagaccgaatcacttggtcagtagatggcggttcgataagtggctcggtacccttactgaaactatcatcgagtcagcttttaaaatgcctat |
106 |
Q |
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| T |
50448441 |
atatgtagagaccgaatcacttggtcagtagatggcagttcgataagtggctcggtacccttactgaaactatcatcgagtcagtttttaaaatgcctat |
50448342 |
T |
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| Q |
107 |
ttcgctgatatatgtatctatgctccccctgaccttgaccataagaaaaccaacacatgctcatattctgtgattaagcaatttttaacatctaacgaac |
206 |
Q |
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| T |
50448341 |
ttcgctgatatatgtatctatgctccccctgaccatgaccataagaaaaccaacacatgctcatattctgtgtttaagcaatttttaacatctaacgaac |
50448242 |
T |
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| Q |
207 |
ttttttataagcttaaaataaatctataaatattaacgagtttttacattacatttggttaaaatctaacaatccagtttattaggtcactgttgtaatt |
306 |
Q |
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| T |
50448241 |
ttttttataagcttaaaataaatctataaatattagcgagtttttacattacatttggttaaaatctaacaatccagtttattaggtcactattgtaatt |
50448142 |
T |
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| Q |
307 |
tcaaggaggacagagtcaaattagataacccgcaatgtttaattattctacgacaagagattgaatgaaacaagctttgtggttgtcctacttgtgaaaa |
406 |
Q |
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| T |
50448141 |
tcaaggaggacagagtcaaattagataacccgcaatgtttagttattctaagacaagagattgaatgaaacaagctttgtggttgtcctacttgtgaaaa |
50448042 |
T |
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| Q |
407 |
tttctcataatagtaatggtagaaaaacgccaaaaacggttgctacttgttgtacaaggaacattggatatttagttatatactattattttgttttgat |
506 |
Q |
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| T |
50448041 |
tttctcataatagtaatggtagaaaaacgccaaaaacggttgctacttgttgtacaaggaacattggatatttagttatttactattattttgttttgat |
50447942 |
T |
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| Q |
507 |
ttttgaacgccaaaagcaaagtgaacaaatcaaacacattggatatttactattactttttctacttat---tatttttcaaaagggaaagagaagaaat |
603 |
Q |
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| T |
50447941 |
ttttgaacaccaaaagcaaagtaaacgaatcaaacacattggatatttactattactttttctacttattattattttgcaaaagggaaagagaagaaat |
50447842 |
T |
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| Q |
604 |
atgtttttggttttgaatttaaagtttggtttgggtctattgaaagaacatcaagagttttcgtgcaaagagaggaatgtcgttgccgaagaagaaggat |
703 |
Q |
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| T |
50447841 |
atgtttttggttttgaatttaaagtttggtttgggtctattgaaagaacatcaagagttttggtgcaaagagaggaatgtcgttaccaaagaagaaggat |
50447742 |
T |
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| Q |
704 |
ggtgtaaatggattaatagcagtggcagtaa |
734 |
Q |
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| T |
50447741 |
ggtgtaaatggattaatagcagtggcagtaa |
50447711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 329 - 460
Target Start/End: Complemental strand, 50443593 - 50443462
Alignment:
| Q |
329 |
agataacccgcaatgtttaattattctacgacaagagattgaatgaaacaagctttgtggttgtcctacttgtgaaaatttctcataatagtaatggtag |
428 |
Q |
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| T |
50443593 |
agatagcccgcaaagtttggttattctaagacaagagtttgaatgaaacaatctttgtggttgccacattagtgaaaattgctcaaaatagtaatttaaa |
50443494 |
T |
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| Q |
429 |
aaaaacgccaaaaacggttgctacttgttgta |
460 |
Q |
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| T |
50443493 |
aaaaagcccaaaaatggttgctatttgttgta |
50443462 |
T |
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