View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5320-Insertion-3 (Length: 686)
Name: NF5320-Insertion-3
Description: NF5320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5320-Insertion-3 |
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Alignment Details
Target: chr2 (Bit Score: 248; Significance: 1e-137; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 159 - 484
Target Start/End: Complemental strand, 44202092 - 44201751
Alignment:
| Q |
159 |
tcatttcacattactcaatttggagtgaacaataaataattaaattccatatataccccagtgtccttatcaatcatcttt----atcaaccatgcatgc |
254 |
Q |
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| T |
44202092 |
tcatttcacattactcaatttggagtgaacaataaataattaaattccatatataccccagtgtccttatcaatcatctttctttatcaaccatgcatgc |
44201993 |
T |
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| Q |
255 |
ccatatggattggtatctagaatttatttatattaacaattgannnnnnnnactctaaagtgtatatatatat------------ccatccctttcataa |
342 |
Q |
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| T |
44201992 |
ccatatggattggtatctagaaattatttatattaacaattgatttcttttactctaaagtttatatatatatatatatatatatccatccctttcataa |
44201893 |
T |
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| Q |
343 |
gatatgcaccctatcgattcgcgagcaaacacgtacagcatggttgtatggaatcctttctcttgtgattatgtaaggatctcatagtccatgtccttca |
442 |
Q |
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| T |
44201892 |
gatatgcaccctatcgattcgcgagcaaacacgtacagcatggttgtatggaatcctttctcttgtgattctgtaaggatctcatagtccatgtccttca |
44201793 |
T |
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| Q |
443 |
ctttatattatggcttcaacttgatccatttggaccatttcc |
484 |
Q |
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| T |
44201792 |
ctttatattatggcttcaacttgatccatttggaccatttcc |
44201751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 8 - 164
Target Start/End: Complemental strand, 44202271 - 44202113
Alignment:
| Q |
8 |
aagacgtaatttgaacaacatgaaaccaagaaagaaccattataa--gcagttgaacctgcctgctactattgctaagccaccaacacgtgagttgcaga |
105 |
Q |
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| T |
44202271 |
aagacgtaatttgaacaacatgaaaccaagaaagaaccattataaaagcagttgaacctgtctgctactattgctaagccaccaacacgtgagttgcaga |
44202172 |
T |
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| Q |
106 |
gaacattatgttcagacttcagacaattattatttcatgagtcataaccctaatcattt |
164 |
Q |
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| T |
44202171 |
gaacattatgttcagacttcagacaattattatttcatgagtcataaccctaatcattt |
44202113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 515 - 686
Target Start/End: Complemental strand, 44201720 - 44201550
Alignment:
| Q |
515 |
gacttgacattcattaatttggacggctatggctatgttttgttatacgttggatactttagaatcacatatatttgagtaagtcaaacatcannnnnnn |
614 |
Q |
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| T |
44201720 |
gacttgacattcattaatttggacggctatggctatgttttgttatacgttgaatactttagaatcacatatatttgagtaagtcaaacatcattttttt |
44201621 |
T |
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| Q |
615 |
nnatttaataaattagttatatttgcctgttcaaggggtacaaattaaagggcttaattagtacgagtcatc |
686 |
Q |
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| T |
44201620 |
tt-tttaataaattagttatatttggcttttcaaggggtacaaattaaagggcttaattagtacgagtcatc |
44201550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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