View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5320-Insertion-4 (Length: 681)

Name: NF5320-Insertion-4
Description: NF5320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5320-Insertion-4
NF5320-Insertion-4
[»] chr5 (1 HSPs)
chr5 (6-681)||(1142367-1143041)
[»] chr1 (1 HSPs)
chr1 (171-242)||(46817121-46817192)


Alignment Details
Target: chr5 (Bit Score: 644; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 644; E-Value: 0
Query Start/End: Original strand, 6 - 681
Target Start/End: Original strand, 1142367 - 1143041
Alignment:
Q  6 catattagagtgtcgcgtcgcagtttacctggagcaggaagcggtgagcctgaggctgcagagaacaacaaatgctatgttagctttgtggacaaaatag 105  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  1142367 catattagagtgtcgcgtcgcagtttacctggagcaggaagtggtgagcctgaggctgcagagaacaacaaatgctatgttagctttgtggacaaa-tag 1142465  T
Q  106 aatagattaaaaacaatattgtaagcactttaaaagagaagaataaagattgaggaaacaatacttttgcattgaagtggaacaccaggcaagttacaag 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1142466 aatagattaaaaacaatattgtaagcactttaaaagagaagaataaagattgaggaaacaatacttttgcattgaagtggaacaccaggcaagttacaag 1142565  T
Q  206 cacgaggaagagagatagctaaggttctattgattggtaatgcaaaaggaacattgccagtggcaataagacacatacaatccttgcttccacttgtgag 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1142566 cacgaggaagagagatagctaaggttctattgattggtaatgcaaaaggaacattgccagtggcaataagacacatacaatccttgcttccacttgtgag 1142665  T
Q  306 ggtcttgattgcattgcagcaatcagcagtgggagaggttccattgccactactatttgtgaggaaactcaagcaagggctaatggtactactgatcatt 405  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1142666 ggtcttgattgcattgcagcaatcagcagtgggagaggttccattgccactactatttgtgaggaaactcaagcaagggctaatggtactactgatcatt 1142765  T
Q  406 gacatgttacatggcgtcgtgatttgagcgtaggccggtgcagccatgaccgtaaccacagctaataccacagttaggcggtagagagacgcgaaatgat 505  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1142766 gacatgttacatggcgtcgtgatttgagcgtaggccggtgcagccatggccgtaaccacagctaataccacagttaggcggtagagagacgcgaaatgat 1142865  T
Q  506 ccgtgtctgtttatattatagagttttgatttgttggtgtgttaggaatttgaatagtcaagataatttgttgagtttaagagtgaagtagaaaagtgag 605  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  1142866 ccatgtctgtttatattatagagttttgatttgttggtgtgttaggaatttgaatagtcaagataatttgttgtgtttaagagtgaagtagaaaagtgag 1142965  T
Q  606 tttgtgaatttgatggttgggaatgatgaataagaacggaattttatagataaaaatggtggacaataataggtgg 681  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||    
T  1142966 tttgtgaatttgatggttgggaatgatgaataagaatggaattttatagataaaaatggtggaaaataataggtgg 1143041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 171 - 242
Target Start/End: Original strand, 46817121 - 46817192
Alignment:
Q  171 tttgcattgaagtggaacaccaggcaagttacaagcacgaggaagagagatagctaaggttctattgattgg 242  Q
    ||||||||||| |||||||||||||| |||||||||||| || ||||||||||| |||||||||||||||||    
T  46817121 tttgcattgaactggaacaccaggcatgttacaagcacgggggagagagatagccaaggttctattgattgg 46817192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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