View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5320-Insertion-6 (Length: 672)
Name: NF5320-Insertion-6
Description: NF5320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5320-Insertion-6 |
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Alignment Details
Target: chr1 (Bit Score: 508; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 508; E-Value: 0
Query Start/End: Original strand, 7 - 605
Target Start/End: Original strand, 35816662 - 35817245
Alignment:
| Q |
7 |
acaaagacccccttatgccactgtcgtgcttccaagctctcaatttcctgccatgcgattctaggatcatgggtttacaggattagtcggtctttatcta |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35816662 |
acaaagacccccttatgccactgtcgtgcttccaagctctcaatttcctgccatgcgattctaggatcatgggtttacaggattagtcggtctttatcta |
35816761 |
T |
|
| Q |
107 |
tctgtgttttgagtagcttattttgcaacgagaaaacttgnnnnnnnnn-gtcagctttcaaagggttgtattttgaaaattaactgcccaagaaaagag |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
35816762 |
tctgtgttttgagtagcttattttgcaacgagaaaacttgttttttttttgtcagctttcgaagggttgtattttgaaaattaactgcccaagaaaagag |
35816861 |
T |
|
| Q |
206 |
ctttcagccaaatgaatgtggttataagctcagtaggttacaagcaacatggcaaattttcccttattatttgtaagtgttacatgctgccacatagaat |
305 |
Q |
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| T |
35816862 |
ctttcagccaaatgaatgtggttataagc----------------aacatggcaaattttcccttattatttgtaagtgttacatgctgccacatagaat |
35816945 |
T |
|
| Q |
306 |
tcttgcgtttcttgtcaaacacccctcacaacaataagcatttccttgtgggaaagaggacgtaatgatgaaacccaattcacccagctgttgcaacgcc |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35816946 |
tcttgcgtttcttgtcaaacacccctcacaacaataagcatttccttgtgggaaagaggacgtaatgatgaaacccaattcacccagctgttgcaacgcc |
35817045 |
T |
|
| Q |
406 |
aacatgcacaaggtcaaattcattaaatataatgtgaaccaatgccaagtagttgagatttgagaagaattgaagtcagggatcattgcatttagaacag |
505 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35817046 |
aacatgcacaaggtcaaattcattaaatataatgtgaaccaatgccaagtagttgagatttgagaagaattgaagtcagggatcattgcatttagaacag |
35817145 |
T |
|
| Q |
506 |
ccccaaatcacggggctgacacaagcttatctcagtttatgtttatttagtatttggtttccatgtgtcatatcttaaacaaattaataagaaatatttg |
605 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35817146 |
ccccaaatcacggggctgacacaagcttatctcagtttatgtttatttagtatttggtttccatgtgtcatatcttaaacaaattaataagaaatatttg |
35817245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 269 - 346
Target Start/End: Original strand, 36744489 - 36744566
Alignment:
| Q |
269 |
ttattatttgtaagtgttacatgctgccacatagaattcttgcgtttcttgtcaaacacccctcacaacaataagcat |
346 |
Q |
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||||||||||||||||||||||||||||||| | |||||| |||||||||||||| | ||| |||||||||||| |
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| T |
36744489 |
ttattatttgtaagtgttacatgctgccacaatggattcttaagtttcttgtcaaacttctctcgtaacaataagcat |
36744566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 269 - 348
Target Start/End: Original strand, 15533559 - 15533638
Alignment:
| Q |
269 |
ttattatttgtaagtgttacatgctgccacatagaattcttgcgtttcttgtcaaacacccctcacaacaataagcattt |
348 |
Q |
| |
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|||| ||||||||||||| |||||||||||||| ||||||| |||||||||||||| | |||| |||||||| ||||| |
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| T |
15533559 |
ttataatttgtaagtgttgcatgctgccacataagattcttgtgtttcttgtcaaacttctctcataacaataaccattt |
15533638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 274 - 348
Target Start/End: Original strand, 15517053 - 15517127
Alignment:
| Q |
274 |
atttgtaagtgttacatgctgccacatagaattcttgcgtttcttgtcaaacacccctcacaacaataagcattt |
348 |
Q |
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||||||||||||| |||||||||||||| ||||||| ||||||||||||| | |||| |||||||||||||| |
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| T |
15517053 |
atttgtaagtgttgcatgctgccacataagattcttgtgtttcttgtcaaatttctctcataacaataagcattt |
15517127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 269 - 320
Target Start/End: Complemental strand, 23693169 - 23693118
Alignment:
| Q |
269 |
ttattatttgtaagtgttacatgctgccacatagaattcttgcgtttcttgt |
320 |
Q |
| |
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|||||||||| ||| |||||||| |||||||||| ||||||||||||||||| |
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| T |
23693169 |
ttattatttgaaagagttacatggtgccacataggattcttgcgtttcttgt |
23693118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 274 - 324
Target Start/End: Complemental strand, 8459064 - 8459014
Alignment:
| Q |
274 |
atttgtaagtgttacatgctgccacatagaattcttgcgtttcttgtcaaa |
324 |
Q |
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|||||| ||||||||||||| |||||||||||| ||| ||||||| ||||| |
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| T |
8459064 |
atttgtgagtgttacatgctaccacatagaatttttgtgtttcttatcaaa |
8459014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 269 - 309
Target Start/End: Complemental strand, 8003947 - 8003907
Alignment:
| Q |
269 |
ttattatttgtaagtgttacatgctgccacatagaattctt |
309 |
Q |
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|||||||||| ||| |||||||| ||||||||||||||||| |
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| T |
8003947 |
ttattatttgaaagagttacatgttgccacatagaattctt |
8003907 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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