View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5320-Insertion-7 (Length: 401)

Name: NF5320-Insertion-7
Description: NF5320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5320-Insertion-7
NF5320-Insertion-7
[»] chr3 (2 HSPs)
chr3 (137-401)||(24878675-24878949)
chr3 (8-89)||(24878997-24879078)


Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 137 - 401
Target Start/End: Complemental strand, 24878949 - 24878675
Alignment:
Q  137 ccctttgtcggagaagggactt---agctataaaaatgaagggaatataacaagttataaatgcaagaaaaataaaagagggaaatgcagggcatacaac 233  Q
    ||||||||| ||||||||||||   |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24878949 ccctttgtcagagaagggacttgatagctataaaaatgacgggaatataacaagttataaatgcaagaaaaataaaagagggaaatgcagggcatacaac 24878850  T
Q  234 cccaacagtctgatgcatgttgatgtatttgatttgtttagttgtgatttgagagtttgatgaagggctgcttcacaccctaacctgctgccacagaaac 333  Q
    |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24878849 cccaacggtctgatgcttgttgatgtatttgatttgtttagttgtgatttgagagtttgatgaagggctgcttcacaccctaacctgctgccacagaaac 24878750  T
Q  334 ttcaaatggaaagaagcataaatctttcaaattt-------aatataaaagacaaatcatccatgcataatcaat 401  Q
    ||||||||||||||||||||||||||||||||||       || ||||||  |||||||||||||||||||||||    
T  24878749 ttcaaatggaaagaagcataaatctttcaaatttcataaagaacataaaacgcaaatcatccatgcataatcaat 24878675  T

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Target: chr3; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 8 - 89
Target Start/End: Complemental strand, 24879078 - 24878997
Alignment:
Q  8 gtcttctagcctgcagtaaatgcaaataacaacatgaggataaggtattgctatgcacatgaatgtaagcaacaacaacatc 89  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24879078 gtcttctagcctgcagtaaatgcaaataacaacatgaggataaggtattgctatgcacatgaatgtaagcaacaacaacatc 24878997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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