View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5320-Insertion-8 (Length: 366)
Name: NF5320-Insertion-8
Description: NF5320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5320-Insertion-8 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 67 - 366
Target Start/End: Original strand, 5109059 - 5109355
Alignment:
| Q |
67 |
taacaaaattaaaggcgcctccttaacataagatgtacgnnnnnnnnnccctttcaagtacaaaatgtcaatataattaatcaaaaatagtcattaagtg |
166 |
Q |
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| T |
5109059 |
taacaaaactaaaggcatctccttaacataagatgtac--taaaaaaacccttttaagtacaaaatgtcaatataattaatcaaaa-taatcattaagtg |
5109155 |
T |
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| Q |
167 |
tccatataattgtctttttagcctgtaaatgataatttgaatatcacaggtgttcttcacaatctgattgctcttaagaatttccgcactgattaaagaa |
266 |
Q |
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| T |
5109156 |
tccatataattgtctttttagcctgtaaatgataatttgaatatcacaggtgttcttcacaatctgattgctcttaagaatttccgcactgattaaagaa |
5109255 |
T |
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| Q |
267 |
acattactttacttgatacttgagggtatattctttacacactatatatttagtatttactgctacactttcataaaagtattggacgacattttcaact |
366 |
Q |
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| T |
5109256 |
acattactttacttgatacttgagggtatattctttacacactatatatttagtatttactgctccactttcataaaagtattggacgacatgttcaact |
5109355 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 98
Target Start/End: Complemental strand, 36521411 - 36521358
Alignment:
| Q |
46 |
aagaaactaaaatggtatatat-aacaaaattaaaggcgcctccttaacataag |
98 |
Q |
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| T |
36521411 |
aagaagctacaatggtatatattaacaaaaccaaaggcgcctccttaacataag |
36521358 |
T |
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