View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5320-Insertion-9 (Length: 192)
Name: NF5320-Insertion-9
Description: NF5320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5320-Insertion-9 |
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Alignment Details
Target: chr3 (Bit Score: 133; Significance: 2e-69; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 8 - 144
Target Start/End: Complemental strand, 54733839 - 54733703
Alignment:
| Q |
8 |
ttgtgtagcaccattccaaattccaaataagagtgtgtttagcttctccccattgaggcaacctaactaattattttccatggtgacaagttgttgaacc |
107 |
Q |
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| T |
54733839 |
ttgtgtagcaccattccaaattccaaataagagtgtgtttagcttctccccattgaggcaacctaactaattattttccatggtgacaagttgttgaacc |
54733740 |
T |
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| Q |
108 |
gcatcacagtaagacagacattcaatcttacgtacta |
144 |
Q |
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| T |
54733739 |
gcatcacagtaagacagacattaaatcttacgtacta |
54733703 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 141 - 192
Target Start/End: Complemental strand, 54733669 - 54733618
Alignment:
| Q |
141 |
actaccataaaaaccaaattggaaaacaccaccatgttttctaactcgaaac |
192 |
Q |
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| T |
54733669 |
actaccataaaaaccaaattggaaaacaccaccatgttttctaactagaaac |
54733618 |
T |
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