View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5320_high_3 (Length: 478)
Name: NF5320_high_3
Description: NF5320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5320_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 18 - 467
Target Start/End: Original strand, 2911711 - 2912160
Alignment:
| Q |
18 |
acaaagtggtatacatatacatctacgtgggtgatcatatatcaattaaatccagtagcctccaaatatagtcagtcatatacaaactctttgatttaat |
117 |
Q |
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| T |
2911711 |
acaaagtggtatgcatatacatctacgtgggtcatcatatatcaattaaatccagtagcctccaaatatagtca----tatacaaactctttgatttaat |
2911806 |
T |
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| Q |
118 |
tccaatcccaaccaaaaccaaagctaa----atacatcattatacacgtaaactttgcaaatggccaacgtggcattgttacttatttcagtccatgatg |
213 |
Q |
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| T |
2911807 |
tccaatcccaaccaaaaccaaagctaattaaatacatcattatacacgtaaactttgcaaatggccaacgtggcattgttacttatttcagtccatgatg |
2911906 |
T |
|
| Q |
214 |
ttgtaactgacacgtgtcctatctcagcccacagagttgagttatgcccattgttattttcttgtttggaaactccgccaaataagaccacatccttagc |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
2911907 |
ttgtaactgacacgtgtcctatctcagcccacagagttgagttatgcccattgttattttcttctttggaaactccgccaaataagaccacatccttagc |
2912006 |
T |
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| Q |
314 |
cggttgtttccacctctttcaacaggtagcaccatgttttataagtaacataaagccattatttcattttgtgttactattagtatacactacactgcac |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2912007 |
cggttgtttccacctctttcaacaggtagcaccatgttttataagtaagataaagccattatttcattttgtgttactattagtatacactacactgcac |
2912106 |
T |
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| Q |
414 |
aatcttcattcatttcaatcccacttcttagtattttatctctcaagcacctat |
467 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2912107 |
aatcttcattcatttcaatcccacttcttagtattttatctctcaagcacctat |
2912160 |
T |
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