View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5320_low_1 (Length: 693)
Name: NF5320_low_1
Description: NF5320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5320_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 579; Significance: 0; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 579; E-Value: 0
Query Start/End: Original strand, 1 - 674
Target Start/End: Original strand, 31629639 - 31630312
Alignment:
| Q |
1 |
ctagctatttgtggtttaagaaatgtttcaatatattatcaatgagggaaacaaatnnnnnnnntaaacacatgctaagatggattgatcattgatgtct |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
31629639 |
ctagctatttgtggtttaagaaatgtttcaatatattatcaatgagggaaacaaataaaaaaaataaacacatgctaagatggattgatcattgatgtct |
31629738 |
T |
|
| Q |
101 |
ttgtttaattaaagttcaaggttaattccctaatatatactattaatgttacaatgcttccatttcccaaatgcctaaggctttatctgattgatctaag |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31629739 |
ttgtttaattaaagttcaaggttaattccctaatatatactattaatgttacaatgcttccatttcccaaatgcctaaggctttatctgattgatctaag |
31629838 |
T |
|
| Q |
201 |
cagacaaagaaggaatgtgaacatctaatcaatacagccaagccaagtatgcaaaaatcatctgttgttgataatgaaacaggaaagagtaaggacagca |
300 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31629839 |
cagacaaagaaggaatgtgaacatctaatcaatacagccaagccaagtatgcaaaaatcatctgttgttgataatgaaacaggaaagagtaaggacagca |
31629938 |
T |
|
| Q |
301 |
ggttagnnnnnnnnnnnnncgaccaaaaattctttagcaagttccctctaagtgcagtgttgaatattataaatcttgttttccttgtttagattgccat |
400 |
Q |
| |
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|||||| | |||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
31629939 |
ggttagtttttttatttttcaaccaaaaattatttagcaagttccctctaagttcagtgttgaatattataaatcttgtttgccttgtttagattgccat |
31630038 |
T |
|
| Q |
401 |
tgtcacttcattgatggttaaccttttgtttacatattgcatttagcgtacgaacaagctctggaacttttcttgacagaggaggtgatgaaattgtgag |
500 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31630039 |
tgtcacttcattgatggttaaccttttgtttacatattgcatttagcgtacgaacaagctctggaacttttcttgacagaggaggtgatgaaattgtgag |
31630138 |
T |
|
| Q |
501 |
gaatattgagaaaagaatcgctgattttacttttatacctgtaggtgtgtaacacgttctttctgccttttgttttttcctttgttcaagaaactaaggc |
600 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31630139 |
gaatattgagaaaagaatcgctgattttacttttatacctgtaggtgcgtaacacgttctttctgccttttgttttttcctttgttcaagaaactaaggc |
31630238 |
T |
|
| Q |
601 |
ttgatgctcctgctaatgctttttgactcaaccatgtattaacgacgtgttttctgctgtcttttgatgctgag |
674 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||||||||||||| |
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|
| T |
31630239 |
ttgatgctcctgctaatgctttttgactcaaccatgtattaaccaagtgttttctgttgtcttttgatgctgag |
31630312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 441 - 674
Target Start/End: Original strand, 31656424 - 31656657
Alignment:
| Q |
441 |
atttagcgtacgaacaagctctggaacttttcttgacagaggaggtgatgaaattgtgaggaatattgagaaaagaatcgctgattttacttttatacct |
540 |
Q |
| |
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||||||| ||||||||||||||||||| ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31656424 |
atttagcatacgaacaagctctggaacatttcttgacagagaaggtgatgaaattgtgagcaatattgagaaaagaatcgctgattttacttttatacct |
31656523 |
T |
|
| Q |
541 |
gtaggtgtgtaacacgttctttctgccttttgttttttcctttgttcaagaaactaaggcttgatgctcctgctaatgctttttgactcaaccatgtatt |
640 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |
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| T |
31656524 |
gtaggtgcgtaacacgttctttctgccttttgttttttcctttgttcaagaaactaaggcttgatgctcctgctagtgctttttgattcaaccatgtatc |
31656623 |
T |
|
| Q |
641 |
aacgacgtgttttctgctgtcttttgatgctgag |
674 |
Q |
| |
|
||||| |||||||| | ||||||||||||||||| |
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|
| T |
31656624 |
aacgaagtgttttcagttgtcttttgatgctgag |
31656657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 368 - 550
Target Start/End: Original strand, 31637270 - 31637458
Alignment:
| Q |
368 |
tataaatcttgttttccttgtttagattgccattgtcacttcattgatggttaaccttttgtttacatatt------gcatttagcgtacgaacaagctc |
461 |
Q |
| |
|
||||||||| |||| || |||||| ||| |||||| ||||||||| ||| ||||||||| ||||||||| |||||||| | |||||||||||| |
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|
| T |
31637270 |
tataaatctcgtttaccatgtttaaatttccattgccacttcattcatgtcaaaccttttgcttacatatttcttttgcatttagtgcacgaacaagctc |
31637369 |
T |
|
| Q |
462 |
tggaacttttcttgacagaggaggtgatgaaattgtgaggaatattgagaaaagaatcgctgattttacttttatacctgtaggtgtgt |
550 |
Q |
| |
|
|||||||||| | ||||||||| |||| ||||| |||| |||| ||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
31637370 |
tggaacttttatcgacagaggatatgataaaattttgagcgatatcgagaaaagaattgctgattttacttttatacctgtaggtgtgt |
31637458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 398 - 547
Target Start/End: Original strand, 31646137 - 31646292
Alignment:
| Q |
398 |
cattgtcacttcattgatggttaaccttttgtttacatatt------gcatttagcgtacgaacaagctctggaacttttcttgacagaggaggtgatga |
491 |
Q |
| |
|
||||| ||||||||||||| ||||||||||||||||||| |||||||| | ||| |||||||||||||||||| | |||||||| |||| | |
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|
| T |
31646137 |
cattgccacttcattgatgccaaaccttttgtttacatatttcttttgcatttagtgcacgtacaagctctggaacttttatcaacagaggacatgataa |
31646236 |
T |
|
| Q |
492 |
aattgtgaggaatattgagaaaagaatcgctgattttacttttatacctgtaggtg |
547 |
Q |
| |
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|||| |||||||||||||| ||||||| |||||||||||||||||||||||||||| |
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| T |
31646237 |
aattctgaggaatattgagcaaagaattgctgattttacttttatacctgtaggtg |
31646292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 441 - 550
Target Start/End: Original strand, 31651645 - 31651754
Alignment:
| Q |
441 |
atttagcgtacgaacaagctctggaacttttcttgacagaggaggtgatgaaattgtgaggaatattgagaaaagaatcgctgattttacttttatacct |
540 |
Q |
| |
|
|||||| | ||| |||||||||||| |||||||| | |||||| ||||| |||||||| ||||||||||| |||||| ||||||||||||||||||||| |
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| T |
31651645 |
atttagggaacggacaagctctggagcttttcttaagagaggaagtgatagaattgtgaagaatattgagagaagaattgctgattttacttttatacct |
31651744 |
T |
|
| Q |
541 |
gtaggtgtgt |
550 |
Q |
| |
|
|||||||||| |
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|
| T |
31651745 |
gtaggtgtgt |
31651754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 102 - 286
Target Start/End: Original strand, 31651342 - 31651522
Alignment:
| Q |
102 |
tgtttaattaaagttcaaggttaattccctaatatatactattaatgttacaatgcttccatttcccaaatgcctaaggctttatctgattgatctaagc |
201 |
Q |
| |
|
|||||||||| |||||| ||||||| |||||| ||||| | |||||||||||| |||||||||| |||||| ||||||| | ||||||||||| ||| |
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|
| T |
31651342 |
tgtttaattatagttcagggttaatcccctaa-atatagttttaatgttacaaat-ttccatttcctaaatgc-taaggcta-agctgattgatctgagc |
31651437 |
T |
|
| Q |
202 |
agacaaagaaggaatgtgaacatctaatcaatacagccaagccaagtatgcaaaaatcatctgttgttgataatgaaacaggaaa |
286 |
Q |
| |
|
||||||| |||||||||||||||||||||||| ||| ||||| |||||||| ||||| ||||| |||| | ||||||||||| |
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|
| T |
31651438 |
agacaaaagaggaatgtgaacatctaatcaatatagcaaagcctagtatgcataaatcggctgttattgacgaggaaacaggaaa |
31651522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 187 - 306
Target Start/End: Original strand, 31646008 - 31646124
Alignment:
| Q |
187 |
ctgattgatctaagcagacaaagaaggaatgtgaacatctaatcaatacagccaagccaagtatgcaaaaatcatctgttgttgataatgaaacaggaaa |
286 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |||||||| ||||| | |||||| ||||||| ||||| |
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|
| T |
31646008 |
ctgattgatctaagcagacaaaagaggaatgtgaacatctaatcaatatagccaagcctagtatgcataaatcgac---tgttgacgatgaaacgggaaa |
31646104 |
T |
|
| Q |
287 |
gagtaaggacagcaggttag |
306 |
Q |
| |
|
|||| ||||| |||||||| |
|
|
| T |
31646105 |
gagtgtggacaacaggttag |
31646124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 143 - 259
Target Start/End: Original strand, 31656156 - 31656269
Alignment:
| Q |
143 |
ttaatgttacaatgcttccatttcccaaatgcctaaggctttatctgattgatctaagcagacaaagaaggaatgtgaacatctaatcaatacagccaag |
242 |
Q |
| |
|
|||||||||||| | |||||||||| |||||| ||||||| | ||||||||||| |||||||||| ||||||| |||||||||||||||| ||| ||| |
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|
| T |
31656156 |
ttaatgttacaa-gtttccatttcctaaatgc-taaggctaaa-ctgattgatctgagcagacaaaagaggaatgcgaacatctaatcaatatagcaaag |
31656252 |
T |
|
| Q |
243 |
ccaagtatgcaaaaatc |
259 |
Q |
| |
|
|| |||||||| ||||| |
|
|
| T |
31656253 |
cctagtatgcataaatc |
31656269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 194 - 306
Target Start/End: Original strand, 31637098 - 31637210
Alignment:
| Q |
194 |
atctaagcagacaaagaaggaatgtgaacatctaatcaatacagccaagccaagtatgcaaaaatcatctgttgttgataatgaaacaggaaagagtaag |
293 |
Q |
| |
|
|||| ||||| |||| |||||||||||||||||||||||| ||||||||| | |||| ||||| ||||||||||| || ||||||||||||| | |
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|
| T |
31637098 |
atcttagcaggcaaaagaggaatgtgaacatctaatcaatatagccaagcctgatgtgcagaaatcgactgttgttgatgatacaacaggaaagagtgtg |
31637197 |
T |
|
| Q |
294 |
gacagcaggttag |
306 |
Q |
| |
|
|||||||||||| |
|
|
| T |
31637198 |
aacagcaggttag |
31637210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 457 - 546
Target Start/End: Complemental strand, 9105543 - 9105454
Alignment:
| Q |
457 |
agctctggaacttttcttgacagaggaggtgatgaaattgtgaggaatattgagaaaagaatcgctgattttacttttatacctgtaggt |
546 |
Q |
| |
|
||||||||||| ||||| | ||| ||| ||||| | |||||||||||||||||||||| ||| || || ||||||||||| ||||||||| |
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|
| T |
9105543 |
agctctggaacatttctggccaggggacgtgataagattgtgaggaatattgagaaaaaaattgccgactttacttttattcctgtaggt |
9105454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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