View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5320_low_11 (Length: 312)

Name: NF5320_low_11
Description: NF5320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5320_low_11
NF5320_low_11
[»] chr1 (1 HSPs)
chr1 (3-296)||(35816374-35816667)


Alignment Details
Target: chr1 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 3 - 296
Target Start/End: Original strand, 35816374 - 35816667
Alignment:
Q  3 tggagtagcataggagtgcaggggcagtcaattccacaataaaagttgtcgatccgagcaaggtaagaattagctaaagcagagttttcacgtactagag 102  Q
    ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35816374 tggaggagcataagagtgcaggggcagtcaattccacaataaaagttgtcgatccgagcaaggtaagaattagctaaagcagagttttcacgtactagag 35816473  T
Q  103 tctcaatatctgagatatctatctgctccctggatttcaacatgtcatcaatagagaacggaatgctgcaaaatcaatgcttaaaatggttaatgttgca 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35816474 tctcaatatctgagatatctatctgctccctggatttcaacatgtcatcaatagagaacggaatgctgcaaaatcaatgcttaaaatggttaatgttgca 35816573  T
Q  203 cacaatatcattatcaccataccgattttcaaaaggatatattatctactacaagcctgtcaaactagtatctactactacatataaaacaaag 296  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  35816574 cacaatatcattatcaccataccgattttcaaaaggatatattaactactacaagcctgtcaaactagtatctactactacatataaaacaaag 35816667  T

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