View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5320_low_14 (Length: 261)
Name: NF5320_low_14
Description: NF5320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5320_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 48 - 242
Target Start/End: Original strand, 11572666 - 11572863
Alignment:
| Q |
48 |
aattctatcagtatcactgtcaatctaaacatgcactaatacaatggtattacagcgtttctttctcaaattctaacttttttctatgattatgttatgt |
147 |
Q |
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| T |
11572666 |
aattctatcagattcactgtcaatctaaacatgcactaatacaatggtattacagcatttctttatcaaattctaacttttttctatgattatgttatgt |
11572765 |
T |
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| Q |
148 |
aa---ttttatgcagatnnnnnnntttaaggacgccgtatcaaaacacggaaatgaacgttgtagcttaggtcaagcaaaaggtttggatgagtctga |
242 |
Q |
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| T |
11572766 |
aatatttttatgcagataaaaaaatttaaggatgccgtatcaaaacacggaaatgaacgttgtagcttaggtcaagcaaaaggtttggatgagtctga |
11572863 |
T |
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