View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5320_low_16 (Length: 258)
Name: NF5320_low_16
Description: NF5320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5320_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 11 - 242
Target Start/End: Original strand, 23852250 - 23852482
Alignment:
| Q |
11 |
caaaggtatgatgatggtgttttaggtttagggcaatcttactttaaccctactctttttcgaccttacgattataggtcaattgggattagaaccgagt |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |||||||||||||||| |
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| T |
23852250 |
caaaggtatgatgatggtgttttaggtttagggcaatcttactttaactctactctttttcgaccttatgattataggtcaatcgggattagaaccgagt |
23852349 |
T |
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| Q |
111 |
caatgattcaaaaaccacattattttagccctaagattgccccacacagttttgggtacag-catagtgctttgttgcaagatatcttaaatccttctct |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
23852350 |
caatgattcaaaaaccacattattttagccctaagattaccccacacagttttgggtacagccatagtgctttgttgcaagatatcttaaatccttctct |
23852449 |
T |
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| Q |
210 |
cgtgtcattgagaaatatggggggtggtaatag |
242 |
Q |
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||||||||||||||||||||||||| ||||||| |
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| T |
23852450 |
cgtgtcattgagaaatatggggggtagtaatag |
23852482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 11 - 122
Target Start/End: Original strand, 23856818 - 23856928
Alignment:
| Q |
11 |
caaaggtatgatgatggtgttttaggtttagggcaatcttactttaaccctactctttttcgaccttacgattataggtcaattgggattagaaccgagt |
110 |
Q |
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||||| |||||||||||| |||||||||| | ||||||||||||| |||||||||||| ||||||| |||||||||||| ||||| ||| |||||||| |
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| T |
23856818 |
caaagatatgatgatggtactttaggtttaaagaaatcttactttaatcctactcttttttgaccttaagattataggtcacttggg-ttaaaaccgagt |
23856916 |
T |
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| Q |
111 |
caatgattcaaa |
122 |
Q |
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| T |
23856917 |
caatgattcaaa |
23856928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 142; Significance: 1e-74; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 11 - 239
Target Start/End: Complemental strand, 3156906 - 3156677
Alignment:
| Q |
11 |
caaaggtatgatgatggtgttttaggtttagggcaatcttactttaaccctactctttttcgaccttacgattataggtcaattgggattagaaccgagt |
110 |
Q |
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|||||||||||||| ||| || | |||| ||||||||||||||| | ||||||||||||||||||||||||||||||||| | ||| | |||||||||| |
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| T |
3156906 |
caaaggtatgatgacagtgcttcaagtttggggcaatcttacttttatcctactctttttcgaccttacgattataggtcactcggggtcagaaccgagt |
3156807 |
T |
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| Q |
111 |
caatgattcaaaaaccacattattttagccctaagattgccccacacagttttgggtacag-catagtgctttgttgcaagatatcttaaatccttctct |
209 |
Q |
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|||||||||||||||||| |||| |||||||||||||| |||||||||||||||||||| | |||||||||||||||||||| |||||||| |||||||| |
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| T |
3156806 |
caatgattcaaaaaccaccttatattagccctaagattaccccacacagttttgggtaccgtcatagtgctttgttgcaagagatcttaaacccttctct |
3156707 |
T |
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| Q |
210 |
cgtgtcattgagaaatatggggggtggtaa |
239 |
Q |
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| T |
3156706 |
tgtgtcattgagaaatatgaggggtggtaa |
3156677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 61 - 242
Target Start/End: Complemental strand, 3139124 - 3138942
Alignment:
| Q |
61 |
tactctttttcgaccttacgattataggtcaattgggattagaaccgagtcaatgattcaaaaaccacattattttagccctaagattgccccacacagt |
160 |
Q |
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|||||||||| |||||| |||||||||| ||||| ||||| | |||||||||||||||||||||| |||||||| ||||| ||| | ||||| ||| |
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| T |
3139124 |
tactctttttacaccttatagttataggtcacttggggttagatcagagtcaatgattcaaaaaccaccttattttaaccctagaattactccacatagt |
3139025 |
T |
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| Q |
161 |
tttgggtacag-catagtgctttgttgcaagatatcttaaatccttctctcgtgtcattgagaaatatggggggtggtaatag |
242 |
Q |
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|||||||| || |||||||||||||||||||| || ||||| |||||||| |||||||||||||||||||||| ||||||||| |
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| T |
3139024 |
tttgggtatagtcatagtgctttgttgcaagagatgttaaacccttctcttgtgtcattgagaaatatgggggttggtaatag |
3138942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 61
Target Start/End: Original strand, 3167364 - 3167414
Alignment:
| Q |
11 |
caaaggtatgatgatggtgttttaggtttagggcaatcttactttaaccct |
61 |
Q |
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|||| |||||| |||||||||| |||||||||||| |||||||||||||| |
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| T |
3167364 |
caaaagtatgaaaatggtgtttttggtttagggcaaccttactttaaccct |
3167414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 57
Target Start/End: Complemental strand, 7491199 - 7491154
Alignment:
| Q |
12 |
aaaggtatgatgatggtgttttaggtttagggcaatcttactttaa |
57 |
Q |
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| T |
7491199 |
aaaggtatgatgctggtgctttaggtttagggcaatctcactttaa |
7491154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 57
Target Start/End: Complemental strand, 7498920 - 7498875
Alignment:
| Q |
12 |
aaaggtatgatgatggtgttttaggtttagggcaatcttactttaa |
57 |
Q |
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|||||||||||| ||||| ||||||||||||||||||| ||||||| |
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| T |
7498920 |
aaaggtatgatgctggtgctttaggtttagggcaatctcactttaa |
7498875 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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