View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5320_low_2 (Length: 514)

Name: NF5320_low_2
Description: NF5320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5320_low_2
NF5320_low_2
[»] chr3 (6 HSPs)
chr3 (1-362)||(6102496-6102857)
chr3 (168-347)||(44169865-44170044)
chr3 (168-347)||(44190161-44190340)
chr3 (405-500)||(6102360-6102455)
chr3 (101-163)||(44170088-44170150)
chr3 (101-163)||(44190384-44190446)
[»] chr5 (2 HSPs)
chr5 (168-347)||(9056266-9056444)
chr5 (7-163)||(9056066-9056222)
[»] chr2 (6 HSPs)
chr2 (168-347)||(32720491-32720659)
chr2 (168-347)||(32728946-32729114)
chr2 (101-163)||(32720703-32720765)
chr2 (101-163)||(32729158-32729220)
chr2 (425-497)||(1846841-1846913)
chr2 (431-475)||(21792649-21792693)
[»] chr1 (1 HSPs)
chr1 (405-500)||(51945856-51945951)
[»] chr8 (1 HSPs)
chr8 (425-497)||(3272579-3272651)


Alignment Details
Target: chr3 (Bit Score: 329; Significance: 0; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 362
Target Start/End: Complemental strand, 6102857 - 6102496
Alignment:
Q  1 atcactgtaatgaagcctgttgaaannnnnnnccttttcattttaatattagagttagattagcactgtgtctatatatcatggattttctgtaaagtga 100  Q
    |||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6102857 atcactgtaatgaagcctgttgaaatttttttccttttcattttaatattagagttagattagcactgtgtctatatatcatggattttctgtaaagtga 6102758  T
Q  101 ttattaaacaatggttgacattgaagtttttatttgtatcatgtttgattgtgttgtctgaattgtattgggattcgtccatatttgatttacgacttac 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  6102757 ttattaaacaatggttgacattgaagtttttatttgtatcatgtttgattgtgttgtctgaattgtattgggattcctccatatttgatttacgacttac 6102658  T
Q  201 aattattctaggtgttgacgtgttgtatgactcaaatggtgagagaaggatctgtttgaggtctttgtaaccttcctttttggatttgatgtactaaacc 300  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6102657 aattattctaggtgctgacgtgttgtatgactcaaatggtgagagaaggatctgtttgaggtctttgtaaccttcctttttggatttgatgtactaaacc 6102558  T
Q  301 attctttcttttatattatttagcttttgatgacctctttgccactgatattttatgtatgg 362  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  6102557 attctttcttttatattatttagcttttgatgacctctttgccactgacattttatgtatgg 6102496  T

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Target: chr3; HSP #2
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 168 - 347
Target Start/End: Complemental strand, 44170044 - 44169865
Alignment:
Q  168 ttgggattcgtccatatttgatttacgacttacaattattctaggtgttgacgtgttgtatgactcaaatggtgagagaaggatctgtttgaggtctttg 267  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  44170044 ttggggttcgtccatatttgatttacgacttacaattattctaggtgctgacgtgttgtatgactcaaatggtgagagaaggatctgtttcaggtctttg 44169945  T
Q  268 taaccttcctttttggatttgatgtactaaaccattctttcttttatattatttagcttttgatgacctctttgccactg 347  Q
    ||  ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  44169944 tatacttcctttttggatttgatgtactaaatcattctttcttttatattatttagcttttgatgacctctttgctactg 44169865  T

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Target: chr3; HSP #3
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 168 - 347
Target Start/End: Complemental strand, 44190340 - 44190161
Alignment:
Q  168 ttgggattcgtccatatttgatttacgacttacaattattctaggtgttgacgtgttgtatgactcaaatggtgagagaaggatctgtttgaggtctttg 267  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  44190340 ttggggttcgtccatatttgatttacgacttacaattattctaggtgctgacgtgttgtatgactcaaatggtgagagaaggatctgtttcaggtctttg 44190241  T
Q  268 taaccttcctttttggatttgatgtactaaaccattctttcttttatattatttagcttttgatgacctctttgccactg 347  Q
    ||  ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  44190240 tatacttcctttttggatttgatgtactaaatcattctttcttttatattatttagcttttgatgacctctttgctactg 44190161  T

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Target: chr3; HSP #4
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 405 - 500
Target Start/End: Complemental strand, 6102455 - 6102360
Alignment:
Q  405 ttaagttaaactcttactatcttctccctttcttctccgaccatctcgtggccgccctccgcctcagcacctccgaacttaaaatcttcatctgat 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6102455 ttaagttaaactcttactatcttctccctttcttctccgaccatctcgtggccgccctccgcctcagcacctccgaacttaaaatcttcatctgat 6102360  T

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Target: chr3; HSP #5
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 101 - 163
Target Start/End: Complemental strand, 44170150 - 44170088
Alignment:
Q  101 ttattaaacaatggttgacattgaagtttttatttgtatcatgtttgattgtgttgtctgaat 163  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  44170150 ttattaaacaatggttgacattgaagtttttatttgtatcatgtttgtttgtgttgtctgaat 44170088  T

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Target: chr3; HSP #6
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 101 - 163
Target Start/End: Complemental strand, 44190446 - 44190384
Alignment:
Q  101 ttattaaacaatggttgacattgaagtttttatttgtatcatgtttgattgtgttgtctgaat 163  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  44190446 ttattaaacaatggttgacattgaagtttttatttgtatcatgtttgtttgtgttgtctgaat 44190384  T

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Target: chr5 (Bit Score: 152; Significance: 3e-80; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 168 - 347
Target Start/End: Original strand, 9056266 - 9056444
Alignment:
Q  168 ttgggattcgtccatatttgatttacgacttacaattattctaggtgttgacgtgttgtatgactcaaatggtgagagaaggatctgtttgaggtctttg 267  Q
    ||||||||||||||||||||||||||||| ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  9056266 ttgggattcgtccatatttgatttacgacctacaattattctaggcgctgacgtgttgtatgactcaaatggtgagagaaggatctgtttcaggtctttg 9056365  T
Q  268 taaccttcctttttggatttgatgtactaaaccattctttcttttatattatttagcttttgatgacctctttgccactg 347  Q
    | ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  9056366 t-accttcctttttggatttgatgtactaaatcattctttcttttatattatttagcttttgatgacctctttgccactg 9056444  T

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Target: chr5; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 7 - 163
Target Start/End: Original strand, 9056066 - 9056222
Alignment:
Q  7 gtaatgaagcctgttgaaannnnnnnccttttcattttaatattagagttagattagcactgtgtctatatatcatggattttctgtaaagtgattatta 106  Q
    |||||||||||||||||||       ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  9056066 gtaatgaagcctgttgaaaaaatttgccttttcattttaatattagaattagattagcactgtgtctatatatcatggattttctgaaaagtgattatta 9056165  T
Q  107 aacaatggttgacattgaagtttttatttgtatcatgtttgattgtgttgtctgaat 163  Q
    ||||||| ||||  ||||||||||||| ||||||||| ||| |||||||||||||||    
T  9056166 aacaatgattgatgttgaagtttttatctgtatcatgcttgtttgtgttgtctgaat 9056222  T

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Target: chr2 (Bit Score: 122; Significance: 2e-62; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 168 - 347
Target Start/End: Complemental strand, 32720659 - 32720491
Alignment:
Q  168 ttgggattcgtccatatttgatttacgacttacaattattctaggtgttgacgtgttgtatgactcaaatggtgagagaaggatctgtttgaggtctttg 267  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  32720659 ttgggattcatccatatttgatttacgacttacaattattctaggtgctgacgtgttgtatgactcaaatggtgagagaaggatctgtttcaggtctttg 32720560  T
Q  268 taaccttcctttttggatttgatgtactaaaccattctttcttttatattatttagcttttgatgacctctttgccactg 347  Q
               |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  32720559 -----------tttggatttgatgtactaaatcattctttcttttatattatttagcttttgatgacctctttgctactg 32720491  T

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Target: chr2; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 168 - 347
Target Start/End: Complemental strand, 32729114 - 32728946
Alignment:
Q  168 ttgggattcgtccatatttgatttacgacttacaattattctaggtgttgacgtgttgtatgactcaaatggtgagagaaggatctgtttgaggtctttg 267  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  32729114 ttgggattcatccatatttgatttacgacttacaattattctaggtgctgacgtgttgtatgactcaaatggtgagagaaggatctgtttcaggtctttg 32729015  T
Q  268 taaccttcctttttggatttgatgtactaaaccattctttcttttatattatttagcttttgatgacctctttgccactg 347  Q
               |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  32729014 -----------tttggatttgatgtactaaatcattctttcttttatattatttagcttttgatgacctctttgctactg 32728946  T

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Target: chr2; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 101 - 163
Target Start/End: Complemental strand, 32720765 - 32720703
Alignment:
Q  101 ttattaaacaatggttgacattgaagtttttatttgtatcatgtttgattgtgttgtctgaat 163  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  32720765 ttattaaacaatggttgacattgaagtttttatttgtatcatgtttgtttgtgttgtctgaat 32720703  T

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Target: chr2; HSP #4
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 101 - 163
Target Start/End: Complemental strand, 32729220 - 32729158
Alignment:
Q  101 ttattaaacaatggttgacattgaagtttttatttgtatcatgtttgattgtgttgtctgaat 163  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  32729220 ttattaaacaatggttgacattgaagtttttatttgtatcatgtttgtttgtgttgtctgaat 32729158  T

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Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 425 - 497
Target Start/End: Original strand, 1846841 - 1846913
Alignment:
Q  425 cttctccctttcttctccgaccatctcgtggccgccctccgcctcagcacctccgaacttaaaatcttcatct 497  Q
    ||||| ||||||||| ||||||||||||  |||||||||||||||||||||  || ||||  |||||||||||    
T  1846841 cttcttcctttcttcaccgaccatctcgccgccgccctccgcctcagcaccgtcggacttgcaatcttcatct 1846913  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 431 - 475
Target Start/End: Original strand, 21792649 - 21792693
Alignment:
Q  431 cctttcttctccgaccatctcgtggccgccctccgcctcagcacc 475  Q
    ||||||||||| ||||||||||  | |||||||||||||||||||    
T  21792649 cctttcttctctgaccatctcgcagtcgccctccgcctcagcacc 21792693  T

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Target: chr1 (Bit Score: 80; Significance: 3e-37; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 405 - 500
Target Start/End: Original strand, 51945856 - 51945951
Alignment:
Q  405 ttaagttaaactcttactatcttctccctttcttctccgaccatctcgtggccgccctccgcctcagcacctccgaacttaaaatcttcatctgat 500  Q
    ||||||||||||||||||||||||||||||||||||||  |||||||| |||||||||||||||||||||||||||| ||||||||||||||||||    
T  51945856 ttaagttaaactcttactatcttctccctttcttctccacccatctcgcggccgccctccgcctcagcacctccgaatttaaaatcttcatctgat 51945951  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 425 - 497
Target Start/End: Complemental strand, 3272651 - 3272579
Alignment:
Q  425 cttctccctttcttctccgaccatctcgtggccgccctccgcctcagcacctccgaacttaaaatcttcatct 497  Q
    ||||| ||||||||| |||||||||| |  || ||||||||||||||||||  || ||||| |||||||||||    
T  3272651 cttcttcctttcttcaccgaccatctggccgctgccctccgcctcagcaccgtcggacttacaatcttcatct 3272579  T

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