View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5320_low_20 (Length: 223)
Name: NF5320_low_20
Description: NF5320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5320_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 142; Significance: 1e-74; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 17 - 203
Target Start/End: Complemental strand, 43895520 - 43895332
Alignment:
| Q |
17 |
ataaagttagattgacaaatattagtggaccgaccatccttnnnnnnnntattagtggaccga--ccatgttagtattttggtttgtccacggactaatt |
114 |
Q |
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| T |
43895520 |
ataaagttagattgacaaatattagtggaccgaccatccttaaaaaaaatattagtggaccgagaccatgttagttttttggtttgtccacggactaatt |
43895421 |
T |
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| Q |
115 |
ttattaaattttagaatatgccgtattagtttacgaacatatttattcaatttatttaacttttgtggcatgtatataggtataacaca |
203 |
Q |
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| T |
43895420 |
ttattaaattttagaatatgctgtattagtttacaaacatatttattcaatttatttaacttttgtggcatgtatataggtataacaca |
43895332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 181
Target Start/End: Complemental strand, 43906720 - 43906676
Alignment:
| Q |
137 |
gtattagtttacgaacatatttattcaatttatttaacttttgtg |
181 |
Q |
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| T |
43906720 |
gtattagtttacaaacaaatttattcaatttatttaactcttgtg |
43906676 |
T |
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