View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5320_low_5 (Length: 458)
Name: NF5320_low_5
Description: NF5320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5320_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 1 - 438
Target Start/End: Complemental strand, 24879511 - 24879074
Alignment:
| Q |
1 |
tgatctatcacgcattctgacaggagacctgctgtaaggagagcaagaccgagaatatgatctgtgccggtcataacgatagtacgatctgcgtcgactg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24879511 |
tgatctatcacgcattctgacaggagacctgctgtaaggagagcgagaccgagaatatgatctgtgccggtcataacgatagtacgatctgcgtcgactg |
24879412 |
T |
|
| Q |
101 |
tagtatggcgagtatgccctccttcgcctgtagtcaggagagtaagacctccttcgcctgtaatcaggtgagtaagagcgactcctactgtggtctgatg |
200 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
24879411 |
tagtatggtgagtatgccctccttcgcctgtagtcaggagagtaagacctccttcgcctgtaatcaggtgagtaagagcgactcctactatggtctgatg |
24879312 |
T |
|
| Q |
201 |
aataaggtgaacgactgtagcttcttctataaggtgaatagctaggagatcgtcgaggagagtagcttggagagcgtcgccgtcctgaatttaacaaaat |
300 |
Q |
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|||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24879311 |
aataaggtgaacgattgtagcttcttctataaggagaatagctaggcgatcgtcgaggagagtagcttggagagcgtcgccgtcctgaatttaacaaaat |
24879212 |
T |
|
| Q |
301 |
gatatggattagaaaatttgcaaggaaaaaagggtggacaatcataaatgaagtcacaagaatgaataatgaaacacacctcgaatagtttttagaccaa |
400 |
Q |
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|||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |
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| T |
24879211 |
gatatggattagaaaatttgaaagaaaaaaagggtggacaatcataaatgaagtcacaagaaagaataatgaaacacacctcgaatagttttgagaccaa |
24879112 |
T |
|
| Q |
401 |
gatatttcccaggtgttggggttcgaccacgtcgtctt |
438 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
24879111 |
gatatttcccaggtgttggggttcgaccacgtcgtctt |
24879074 |
T |
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