View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5320_low_6 (Length: 438)
Name: NF5320_low_6
Description: NF5320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5320_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 19 - 434
Target Start/End: Original strand, 52806944 - 52807359
Alignment:
| Q |
19 |
gttgtgaagtttgatggtgaggctgatgagacttaagacaagctcttttgaaggaacttagtcttaaggtaagtaaagtgatggctacatgtagaggagt |
118 |
Q |
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| T |
52806944 |
gttgtgaagtttgatggtgaggctgatgagacttaagacaagcccttttgaaggaacttagtcttaaggtaagtaaagtgatggctacatgtagaggagt |
52807043 |
T |
|
| Q |
119 |
gacttgtggatgacctcgccttctagccaacacaagagaatgcttcaaaactgaagcagcctctgctgtgagggtctgctgcaatgcacaacctcctgag |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52807044 |
gacttgtggatgacctcgccttctagccaacacaagagaatgcttcaaaactgaagcagcctctgctgtgagggtctgctgcaatgcacaacctcctgag |
52807143 |
T |
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| Q |
219 |
cgcatcacttgatatatacacaccccctatacacttccctctttgtctttggaagctagtttagtttagttactctcttttgtttttctatcaaagaaac |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52807144 |
cgcatcacttgatatatacacaccccctatacacttccctctttgtctttggaagctagtttagtttagttactctcttttgtttttctatcaaagaaac |
52807243 |
T |
|
| Q |
319 |
gtggaactagcttaaagagtttcaatgagtgagagagaatgaaagagctctagtaaacaggctttagaaataacaataactatgcctcactgctttcttt |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52807244 |
gtggaactagcttaaagagtttcaatgagtgagagagaatgaaagagctctagtaaacaggctttagaaataacaataactatgcctcactgctttcttt |
52807343 |
T |
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| Q |
419 |
atagttcatctcactc |
434 |
Q |
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||||||| | |||||| |
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| T |
52807344 |
atagttcttgtcactc |
52807359 |
T |
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