View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5320_low_7 (Length: 390)
Name: NF5320_low_7
Description: NF5320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5320_low_7 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 26 - 375
Target Start/End: Original strand, 7235009 - 7235356
Alignment:
| Q |
26 |
aaaaatttccccctttctttcatgaaaggttaaaaagataattaaaagttactttaaaaataataaattcttatgattgtcatgtttttatgtaacctca |
125 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |
|
|
| T |
7235009 |
aaaaatttccccctttctttcatgaaaggttaaaaagataattaaaagttactttaaaaataataaattcttatgattatcatgtttttatgcaacctca |
7235108 |
T |
|
| Q |
126 |
ttattaattgagttaaagggataaacacaacacattttttaataagcacgaacaaaacaaattgatccactcaaaagacatttaatagcgaatctaattt |
225 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
7235109 |
ttattaattgagttaaagggataaacacaacacattttttaataagcacgaacaaaacaaattgatccattcaaaagacatttaatagcgaatctaattt |
7235208 |
T |
|
| Q |
226 |
taagaaaatactttttaaaactctataaattctatnnnnnnnnnntatattaggagagaacaagctttaggcactataaagttattaaccatattatann |
325 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
7235209 |
taagaaaatactttttaaaactctataaattctat--aaaaaaaatatattaggagagaacaagctttaggcattataaagttattaaccatattatatt |
7235306 |
T |
|
| Q |
326 |
nnnnnacctacaaagaggataaaatatgactaaaattctcatgttgtttt |
375 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7235307 |
tttttacctacaaagaggataaaatatgactaaaattctcatgttgtttt |
7235356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University