View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5321_high_5 (Length: 320)

Name: NF5321_high_5
Description: NF5321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5321_high_5
NF5321_high_5
[»] chr6 (26 HSPs)
chr6 (129-313)||(9171927-9172111)
chr6 (148-313)||(9158298-9158457)
chr6 (4-120)||(9171727-9171843)
chr6 (2-144)||(9158562-9158703)
chr6 (148-287)||(9128775-9128908)
chr6 (4-144)||(9129013-9129152)
chr6 (164-291)||(7031179-7031300)
chr6 (207-291)||(7043252-7043336)
chr6 (7-112)||(7038516-7038621)
chr6 (5-120)||(7052997-7053112)
chr6 (141-201)||(7031043-7031103)
chr6 (134-190)||(7043204-7043260)
chr6 (4-58)||(7042373-7042427)
chr6 (124-193)||(2924160-2924229)
chr6 (4-90)||(7026657-7026743)
chr6 (4-72)||(7047713-7047781)
chr6 (149-193)||(9129000-9129044)
chr6 (149-193)||(9158549-9158593)
chr6 (7-42)||(28177253-28177288)
chr6 (9-44)||(28219818-28219853)
chr6 (7-42)||(28220020-28220055)
chr6 (7-44)||(28132949-28132986)
chr6 (7-40)||(28133151-28133184)
chr6 (9-42)||(28177053-28177086)
chr6 (134-174)||(7042608-7042648)
chr6 (141-193)||(7048077-7048129)
[»] scaffold0038 (2 HSPs)
scaffold0038 (9-44)||(20316-20351)
scaffold0038 (7-42)||(20518-20553)
[»] scaffold0455 (1 HSPs)
scaffold0455 (7-44)||(10855-10892)


Alignment Details
Target: chr6 (Bit Score: 161; Significance: 7e-86; HSPs: 26)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 129 - 313
Target Start/End: Original strand, 9171927 - 9172111
Alignment:
Q  129 gagggtataagtaaaaacaaaagctataaacaattagaagctataatcaaaacctataagcagaaccagaagcagaagctataagcaattagaacccatt 228  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9171927 gaggctataagtaaaaacaaaagctataaacaattagaagctataatcaaaacctataagcagaaccagaagcagaagctataagcaattagaacccatt 9172026  T
Q  229 tccacccatagccacaacaaattttataagtgatgcaacatccatgtgctgtgggacttaacgttattgtaatctccaggatcaa 313  Q
    |||||||||||||||||| ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |||| ||||    
T  9172027 tccacccatagccacaacgaattttataagtgattcaacatccatgtgcagtgggacttaacgttattgtaatcttcaggttcaa 9172111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 148 - 313
Target Start/End: Complemental strand, 9158457 - 9158298
Alignment:
Q  148 aaagctataaacaattagaagctataatcaaaacctataagcagaaccagaagcagaagctataagcaattagaacccatttccacccatagccacaaca 247  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||      |||||||||||||||||| ||||||||||||||||||||||||||||     
T  9158457 aaagctataaacaattaaaagctataatcaaaacctataagcagaa------gcagaagctataagcaatcagaacccatttccacccatagccacaacg 9158364  T
Q  248 aattttataagtgatgcaacatccatgtgctgtgggacttaacgttattgtaatctccaggatcaa 313  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| ||||    
T  9158363 aattttataagtgatgcaacatccatgtgcagtgggacttaacgttattgtaatcttcaggttcaa 9158298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 4 - 120
Target Start/End: Original strand, 9171727 - 9171843
Alignment:
Q  4 gattcgttgtgatatcagattaagaagatcctttggaagtttagtccagtcgaccgctgccatggatgctagtagcataagctataaccctaaattataa 103  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  9171727 gattcgttgtgatatcagattgagaagatcctttggaagtttagtccagtcgaccgctgccatggatgctagtagcagaagctataaccctaaattataa 9171826  T
Q  104 acaattagaagctataa 120  Q
    |||||||||||||||||    
T  9171827 acaattagaagctataa 9171843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 2 - 144
Target Start/End: Complemental strand, 9158703 - 9158562
Alignment:
Q  2 ttgattcgttgtgatatcagattaagaagatcctttggaagtttagtccagtcgaccgctgccatggatgctagtagcataagctataaccctaaattat 101  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||||||||    
T  9158703 ttgattcgttgtgatatcagattgagaagatcctttggaagtttagtccagtcgaccgctgccatggatgctagtagaataagctataagcataaattat 9158604  T
Q  102 aaacaattagaagctataataaaattagagggtataagtaaaa 144  Q
    ||||| ||||||||||||| | ||||||||| |||||| ||||    
T  9158603 aaacagttagaagctataa-acaattagaggctataagcaaaa 9158562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 148 - 287
Target Start/End: Complemental strand, 9128908 - 9128775
Alignment:
Q  148 aaagctataaacaattagaagctataatcaaaacctataagcagaaccagaagcagaagctataagcaattagaacccatttccacccatagccacaaca 247  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||      |||||||||||||||||||||||||||||||||||||||||||||||     
T  9128908 aaagctataaacaattaaaagctataatcaaaacctataagcagaa------gcagaagctataagcaattagaacccatttccacccatagccacaacg 9128815  T
Q  248 aattttataagtgatgcaacatccatgtgctgtgggactt 287  Q
    ||||||||| |||||||||||||||||||| |||||||||    
T  9128814 aattttatatgtgatgcaacatccatgtgcggtgggactt 9128775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 4 - 144
Target Start/End: Complemental strand, 9129152 - 9129013
Alignment:
Q  4 gattcgttgtgatatcagattaagaagatcctttggaagtttagtccagtcgaccgctgccatggatgctagtagcataagctataaccctaaattataa 103  Q
    ||||||||||||||||||||| |||| ||||||||||||||| |||||||||||| ||||||||| ||||||||||| ||||||||||||||||||||||    
T  9129152 gattcgttgtgatatcagattgagaatatcctttggaagttttgtccagtcgaccactgccatgggtgctagtagcagaagctataaccctaaattataa 9129053  T
Q  104 acaattagaagctataataaaattagagggtataagtaaaa 144  Q
    ||||||||||||||||| | ||||||||| |||||| ||||    
T  9129052 acaattagaagctataa-acaattagaggctataagcaaaa 9129013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 164 - 291
Target Start/End: Original strand, 7031179 - 7031300
Alignment:
Q  164 agaagctataatcaaaacctataagcagaaccagaagcagaagctataagcaattagaacccatttccacccatagccacaacaaattttataagtgatg 263  Q
    |||||||||| ||||||||||||||||||      ||||||||||||||||||||||||||||||||||||||||| |||||  |||||||||| |||||    
T  7031179 agaagctatagtcaaaacctataagcaga------agcagaagctataagcaattagaacccatttccacccatagtcacaaggaattttataaatgatg 7031272  T
Q  264 caacatccatgtgctgtgggacttaacg 291  Q
     || |||||||||| |||||||||||||    
T  7031273 taagatccatgtgcggtgggacttaacg 7031300  T

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Target: chr6; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 207 - 291
Target Start/End: Original strand, 7043252 - 7043336
Alignment:
Q  207 ctataagcaattagaacccatttccacccatagccacaacaaattttataagtgatgcaacatccatgtgctgtgggacttaacg 291  Q
    ||||||||||||||||||||||||||||||||| |||||| |||||||||||||| || |||||||||||| |||||||||||||    
T  7043252 ctataagcaattagaacccatttccacccatagtcacaacgaattttataagtgacgcgacatccatgtgcggtgggacttaacg 7043336  T

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Target: chr6; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 7 - 112
Target Start/End: Original strand, 7038516 - 7038621
Alignment:
Q  7 tcgttgtgatatcagattaagaagatcctttggaagtttagtccagtcgaccgctgccatggatgctagtagcataagctataaccctaaattataaaca 106  Q
    |||||||||||||| ||| ||||| ||| |||| ||||||| |||||||||||| |||||||||||||||||||  |||||||| | ||||||||| |||    
T  7038516 tcgttgtgatatcaaattgagaagctccgttgggagtttagaccagtcgaccgccgccatggatgctagtagcaggagctataagcataaattatagaca 7038615  T
Q  107 attaga 112  Q
    ||||||    
T  7038616 attaga 7038621  T

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Target: chr6; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 5 - 120
Target Start/End: Original strand, 7052997 - 7053112
Alignment:
Q  5 attcgttgtgatatcagattaagaagatcctttggaagtttagtccagtcgaccgctgccatggatgctagtagcataagctataaccctaaattataaa 104  Q
    |||||||||||||||||||| ||||| ||| |||| ||||||| |||||| ||||| ||||| ||||||  ||||| |||||| || |  ||  ||||||    
T  7052997 attcgttgtgatatcagattgagaagctccgttgggagtttagaccagtctaccgcagccatagatgcttatagcagaagctacaagcaaaacctataaa 7053096  T
Q  105 caattagaagctataa 120  Q
     |||||||||||||||    
T  7053097 gaattagaagctataa 7053112  T

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Target: chr6; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 141 - 201
Target Start/End: Original strand, 7031043 - 7031103
Alignment:
Q  141 aaaaacaaaagctataaacaattagaagctataatcaaaacctataagcagaaccagaagc 201  Q
    ||||||||||||||||||| |||||||||||||| ||||||| ||||| |||| |||||||    
T  7031043 aaaaacaaaagctataaactattagaagctataagcaaaaccaataagtagaagcagaagc 7031103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 134 - 190
Target Start/End: Original strand, 7043204 - 7043260
Alignment:
Q  134 tataagtaaaaacaaaagctataaacaattagaagctataatcaaaacctataagca 190  Q
    |||||| |||| || |||| |||||||||||||||||||||||||||||||||||||    
T  7043204 tataagcaaaaccagaagccataaacaattagaagctataatcaaaacctataagca 7043260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 4 - 58
Target Start/End: Original strand, 7042373 - 7042427
Alignment:
Q  4 gattcgttgtgatatcagattaagaagatcctttggaagtttagtccagtcgacc 58  Q
    ||||||||||||||||||||| ||||| ||| |||||||||||| ||||||||||    
T  7042373 gattcgttgtgatatcagattgagaagctccgttggaagtttagaccagtcgacc 7042427  T

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Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 124 - 193
Target Start/End: Complemental strand, 2924229 - 2924160
Alignment:
Q  124 aattagagggtataagtaaaaacaaaagctataaacaattagaagctataatcaaaacctataagcagaa 193  Q
    ||||||| | |||||| ||||| | |||||||||||||||||| ||||||| ||||||||||||| ||||    
T  2924229 aattagaagctataagcaaaaagataagctataaacaattagaggctataagcaaaacctataagtagaa 2924160  T

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Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 90
Target Start/End: Original strand, 7026657 - 7026743
Alignment:
Q  4 gattcgttgtgatatcagattaagaagatcctttggaagtttagtccagtcgaccgctgccatggatgctagtagcataagctataa 90  Q
    ||||||||| ||||||||||| ||||| ||| |||| ||||||| ||| || ||||  ||||||||||||||| ||| || ||||||    
T  7026657 gattcgttgcgatatcagattgagaagctccgttgggagtttagaccaatcaaccgtcgccatggatgctagtggcagaatctataa 7026743  T

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Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 72
Target Start/End: Original strand, 7047713 - 7047781
Alignment:
Q  4 gattcgttgtgatatcagattaagaagatcctttggaagtttagtccagtcgaccgctgccatggatgc 72  Q
    ||||||||||||||||||||| ||||| ||  |||| ||||||| |||||||||||   ||||||||||    
T  7047713 gattcgttgtgatatcagattgagaaggtctgttgggagtttagaccagtcgaccgtctccatggatgc 7047781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 193
Target Start/End: Complemental strand, 9129044 - 9129000
Alignment:
Q  149 aagctataaacaattagaagctataatcaaaacctataagcagaa 193  Q
    |||||||||||||||||| ||||||| ||||||||||||| ||||    
T  9129044 aagctataaacaattagaggctataagcaaaacctataaggagaa 9129000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 193
Target Start/End: Complemental strand, 9158593 - 9158549
Alignment:
Q  149 aagctataaacaattagaagctataatcaaaacctataagcagaa 193  Q
    |||||||||||||||||| ||||||| ||||||||||||| ||||    
T  9158593 aagctataaacaattagaggctataagcaaaacctataaggagaa 9158549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 7 - 42
Target Start/End: Original strand, 28177253 - 28177288
Alignment:
Q  7 tcgttgtgatatcagattaagaagatcctttggaag 42  Q
    |||||||||||||||||| |||||||||||||||||    
T  28177253 tcgttgtgatatcagattgagaagatcctttggaag 28177288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 9 - 44
Target Start/End: Complemental strand, 28219853 - 28219818
Alignment:
Q  9 gttgtgatatcagattaagaagatcctttggaagtt 44  Q
    |||||||||||||||| |||||||||||||||||||    
T  28219853 gttgtgatatcagattgagaagatcctttggaagtt 28219818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 7 - 42
Target Start/End: Original strand, 28220020 - 28220055
Alignment:
Q  7 tcgttgtgatatcagattaagaagatcctttggaag 42  Q
    |||||||||||||||||| |||||||||||||||||    
T  28220020 tcgttgtgatatcagattgagaagatcctttggaag 28220055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 44
Target Start/End: Complemental strand, 28132986 - 28132949
Alignment:
Q  7 tcgttgtgatatcagattaagaagatcctttggaagtt 44  Q
    |||||| ||||||||||| |||||||||||||||||||    
T  28132986 tcgttgagatatcagattgagaagatcctttggaagtt 28132949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 40
Target Start/End: Original strand, 28133151 - 28133184
Alignment:
Q  7 tcgttgtgatatcagattaagaagatcctttgga 40  Q
    |||||||||||||||||| |||||||||||||||    
T  28133151 tcgttgtgatatcagattgagaagatcctttgga 28133184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 42
Target Start/End: Complemental strand, 28177086 - 28177053
Alignment:
Q  9 gttgtgatatcagattaagaagatcctttggaag 42  Q
    |||||||||||||||| |||||||||||||||||    
T  28177086 gttgtgatatcagattgagaagatcctttggaag 28177053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 174
Target Start/End: Original strand, 7042608 - 7042648
Alignment:
Q  134 tataagtaaaaacaaaagctataaacaattagaagctataa 174  Q
    |||||| ||||||| |||| |||||||||||||||||||||    
T  7042608 tataagcaaaaacagaagcgataaacaattagaagctataa 7042648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 141 - 193
Target Start/End: Original strand, 7048077 - 7048129
Alignment:
Q  141 aaaaacaaaagctataaacaattagaagctataatcaaaacctataagcagaa 193  Q
    ||||||| ||||||||||||| ||| |||| ||||||||| |||| |||||||    
T  7048077 aaaaacagaagctataaacaagtaggagctgtaatcaaaagctatgagcagaa 7048129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 9 - 44
Target Start/End: Complemental strand, 20351 - 20316
Alignment:
Q  9 gttgtgatatcagattaagaagatcctttggaagtt 44  Q
    |||||||||||||||| |||||||||||||||||||    
T  20351 gttgtgatatcagattgagaagatcctttggaagtt 20316  T

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Target: scaffold0038; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 7 - 42
Target Start/End: Original strand, 20518 - 20553
Alignment:
Q  7 tcgttgtgatatcagattaagaagatcctttggaag 42  Q
    |||||||||||||||||| |||||||||||||||||    
T  20518 tcgttgtgatatcagattgagaagatcctttggaag 20553  T

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Target: scaffold0455 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0455
Description:

Target: scaffold0455; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 44
Target Start/End: Complemental strand, 10892 - 10855
Alignment:
Q  7 tcgttgtgatatcagattaagaagatcctttggaagtt 44  Q
    |||||| ||||||||||| |||||||||||||||||||    
T  10892 tcgttgagatatcagattgagaagatcctttggaagtt 10855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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