View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5321_low_1 (Length: 241)

Name: NF5321_low_1
Description: NF5321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5321_low_1
NF5321_low_1
[»] chr1 (23 HSPs)
chr1 (73-223)||(3385458-3385608)
chr1 (73-223)||(24883116-24883265)
chr1 (85-223)||(33401004-33401141)
chr1 (102-219)||(34970136-34970253)
chr1 (85-223)||(27171815-27171953)
chr1 (111-223)||(13946964-13947076)
chr1 (83-223)||(37948802-37948942)
chr1 (83-223)||(33156602-33156741)
chr1 (73-218)||(39781074-39781213)
chr1 (73-223)||(49776823-49776972)
chr1 (111-218)||(43297003-43297110)
chr1 (117-223)||(38338814-38338920)
chr1 (160-211)||(42082904-42082955)
chr1 (83-180)||(49777013-49777110)
chr1 (83-180)||(33400869-33400968)
chr1 (85-180)||(34970001-34970096)
chr1 (111-176)||(37948982-37949047)
chr1 (83-175)||(5771922-5772014)
chr1 (117-180)||(38338715-38338778)
chr1 (85-177)||(3385324-3385419)
chr1 (111-180)||(13947112-13947181)
chr1 (111-180)||(27171989-27172058)
chr1 (73-145)||(24882975-24883047)
[»] chr2 (19 HSPs)
chr2 (86-223)||(21265709-21265846)
chr2 (73-223)||(22563214-22563364)
chr2 (89-223)||(29892820-29892953)
chr2 (83-223)||(20296276-20296416)
chr2 (83-223)||(17200225-17200364)
chr2 (92-223)||(156971-157101)
chr2 (73-223)||(34645551-34645700)
chr2 (83-180)||(12232577-12232673)
chr2 (111-214)||(8237886-8237988)
chr2 (111-223)||(12232709-12232821)
chr2 (73-180)||(17200082-17200189)
chr2 (160-218)||(13979723-13979781)
chr2 (83-180)||(21265577-21265673)
chr2 (73-180)||(29892989-29893094)
chr2 (73-180)||(22563400-22563507)
chr2 (73-166)||(4371458-4371551)
chr2 (73-180)||(34645736-34645843)
chr2 (86-180)||(20296606-20296700)
chr2 (83-121)||(33491417-33491455)
[»] chr8 (15 HSPs)
chr8 (83-218)||(14999185-14999320)
chr8 (73-223)||(41721974-41722124)
chr8 (73-223)||(43801618-43801768)
chr8 (102-215)||(40621682-40621795)
chr8 (83-223)||(41403906-41404047)
chr8 (102-223)||(6911176-6911297)
chr8 (85-223)||(16324991-16325131)
chr8 (97-218)||(22781206-22781325)
chr8 (161-223)||(8489520-8489582)
chr8 (83-180)||(6911043-6911140)
chr8 (73-171)||(15009057-15009155)
chr8 (83-180)||(16324858-16324955)
chr8 (83-180)||(8489387-8489484)
chr8 (85-180)||(41403775-41403870)
chr8 (85-145)||(43801486-43801546)
[»] chr3 (16 HSPs)
chr3 (83-223)||(43797499-43797639)
chr3 (73-218)||(4041335-4041480)
chr3 (86-223)||(29828828-29828965)
chr3 (97-223)||(46883559-46883685)
chr3 (84-223)||(53197003-53197142)
chr3 (73-223)||(38499823-38499972)
chr3 (94-223)||(25349857-25349986)
chr3 (97-223)||(8799463-8799589)
chr3 (111-218)||(43797685-43797792)
chr3 (73-181)||(38500011-38500118)
chr3 (74-180)||(53197175-53197279)
chr3 (83-180)||(43797366-43797463)
chr3 (111-218)||(20383184-20383294)
chr3 (111-180)||(46883457-46883526)
chr3 (73-177)||(8799321-8799425)
chr3 (19-61)||(25350009-25350053)
[»] chr6 (8 HSPs)
chr6 (83-223)||(22748735-22748875)
chr6 (73-223)||(16125526-16125676)
chr6 (117-220)||(11014369-11014472)
chr6 (111-215)||(24565259-24565361)
chr6 (73-180)||(22748592-22748699)
chr6 (106-177)||(33277343-33277414)
chr6 (172-215)||(34851461-34851504)
chr6 (170-210)||(33277465-33277505)
[»] chr5 (15 HSPs)
chr5 (75-223)||(36955441-36955589)
chr5 (73-223)||(31193969-31194119)
chr5 (91-223)||(39634827-39634957)
chr5 (83-218)||(14076820-14076956)
chr5 (111-223)||(42546391-42546503)
chr5 (160-223)||(32346988-32347051)
chr5 (163-223)||(304158-304218)
chr5 (73-180)||(17370071-17370178)
chr5 (73-180)||(31194155-31194262)
chr5 (170-223)||(17370214-17370267)
chr5 (83-180)||(8754672-8754769)
chr5 (86-180)||(39634993-39635086)
chr5 (83-180)||(32347087-32347184)
chr5 (73-137)||(36955307-36955371)
chr5 (102-180)||(42546539-42546617)
[»] chr4 (26 HSPs)
chr4 (73-215)||(5465857-5465999)
chr4 (74-223)||(46993216-46993365)
chr4 (83-223)||(24673869-24674008)
chr4 (73-211)||(11789863-11790001)
chr4 (102-223)||(9551257-9551378)
chr4 (160-223)||(19037813-19037876)
chr4 (111-218)||(26297465-26297572)
chr4 (111-223)||(3556511-3556624)
chr4 (118-218)||(1024956-1025055)
chr4 (73-215)||(23655222-23655365)
chr4 (74-178)||(46993072-46993176)
chr4 (168-223)||(32591247-32591302)
chr4 (160-217)||(21785799-21785854)
chr4 (83-177)||(50544270-50544364)
chr4 (162-223)||(53769532-53769593)
chr4 (96-180)||(11790052-11790136)
chr4 (83-214)||(17914906-17915035)
chr4 (74-145)||(54316054-54316125)
chr4 (86-180)||(1025096-1025190)
chr4 (73-176)||(7061976-7062079)
chr4 (83-211)||(42475890-42476007)
chr4 (83-144)||(50551478-50551539)
chr4 (73-177)||(9551418-9551522)
chr4 (102-180)||(32591338-32591417)
chr4 (97-138)||(5466081-5466122)
chr4 (111-180)||(17914755-17914824)
[»] chr7 (16 HSPs)
chr7 (103-223)||(6408401-6408521)
chr7 (83-216)||(35207332-35207462)
chr7 (73-223)||(19318294-19318445)
chr7 (85-223)||(26903447-26903582)
chr7 (97-223)||(48006271-48006397)
chr7 (73-180)||(35207182-35207289)
chr7 (73-218)||(35363322-35363467)
chr7 (83-223)||(2834348-2834486)
chr7 (73-188)||(25048205-25048321)
chr7 (168-223)||(29474512-29474567)
chr7 (111-177)||(35363511-35363577)
chr7 (83-180)||(19318161-19318258)
chr7 (83-180)||(29474603-29474699)
chr7 (83-176)||(39983836-39983924)
chr7 (83-180)||(6408267-6408365)
chr7 (73-137)||(19318452-19318516)


Alignment Details
Target: chr1 (Bit Score: 95; Significance: 1e-46; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 73 - 223
Target Start/End: Complemental strand, 3385608 - 3385458
Alignment:
Q  73 tcgggtacgttccatttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaatta 172  Q
    ||||||| | ||||||||||| |||||| |||||||  ||||||||||||||||||||||||||||||||||| | ||||| |||  |||||||||||||    
T  3385608 tcgggtatgctccatttaggccaagctccatttactccatttagggtttggatgtaagatatgtggtaaaaaaatatctaacggttgagattttaaatta 3385509  T
Q  173 aaaaacaaatatttgtttaatgaaaatacataataataacaaacaactcat 223  Q
    ||||| ||||||||||||||| |||||||||||||||||||||||| ||||    
T  3385508 aaaaataaatatttgtttaataaaaatacataataataacaaacaaatcat 3385458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 73 - 223
Target Start/End: Complemental strand, 24883265 - 24883116
Alignment:
Q  73 tcgggtacgttccatttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaatta 172  Q
    ||||||| |||||||||||||||||||| |||||||  |||||||||||||||| ||||||||||| |||||| | ||||| |||  |||||||||||||    
T  24883265 tcgggtatgttccatttaggctaagctccatttactccatttagggtttggatgcaagatatgtggcaaaaaaatatctaacggttgagattttaaatta 24883166  T
Q  173 aaaaacaaatatttgtttaatgaaaatacataataataacaaacaactcat 223  Q
    ||||| ||||||||||||||| |||||||||||||||||||||||| ||||    
T  24883165 aaaaa-aaatatttgtttaataaaaatacataataataacaaacaaatcat 24883116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 85 - 223
Target Start/End: Complemental strand, 33401141 - 33401004
Alignment:
Q  85 catttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaaaaacaaatat 184  Q
    ||||||||||||||||||||||||||||||| ||||| ||||||||| |||||| ||||||   | ||| ||| ||||||||||||||||||| ||||||    
T  33401141 catttaggctaagctcaatttactttatttaaggtttagatgtaagacatgtggcaaaaaaaaat-taacggttaagattttaaattaaaaaataaatat 33401043  T
Q  185 ttgtttaatgaaaatacataataataacaaacaactcat 223  Q
    ||||||||| |||||||||||||||||||||||| ||||    
T  33401042 ttgtttaataaaaatacataataataacaaacaaatcat 33401004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 102 - 219
Target Start/End: Complemental strand, 34970253 - 34970136
Alignment:
Q  102 atttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaaaaacaaatatttgtttaatgaaaatac 201  Q
    |||||||||||||| ||||||||||||||| |||||| |||||| | ||||| ||| ||||||||||||||||||| ||||||||||||||| |||||||    
T  34970253 atttactttatttaaggtttggatgtaagacatgtggcaaaaaaatatctaacggttaagattttaaattaaaaaataaatatttgtttaataaaaatac 34970154  T
Q  202 ataataataacaaacaac 219  Q
    ||||||||||||||||||    
T  34970153 ataataataacaaacaac 34970136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 85 - 223
Target Start/End: Original strand, 27171815 - 27171953
Alignment:
Q  85 catttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaaaaacaaatat 184  Q
    |||||||||||||||  |||||||  ||||| ||||||||||||||| |||||| |||||| | ||||| |||| |||||||||||||||||||||||||    
T  27171815 catttaggctaagcttcatttactccatttatggtttggatgtaagacatgtggcaaaaaaatatctaacggtcgagattttaaattaaaaaacaaatat 27171914  T
Q  185 ttgtttaatgaaaatacataataataacaaacaactcat 223  Q
    ||||||||   ||||||||||||||||||||||| ||||    
T  27171915 ttgtttaacagaaatacataataataacaaacaaatcat 27171953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 111 - 223
Target Start/End: Original strand, 13946964 - 13947076
Alignment:
Q  111 atttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaaaaacaaatatttgtttaatgaaaatacataataata 210  Q
    ||||||||||||||||||||| |||||| |||||| | ||||| |||  |||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  13946964 atttagggtttggatgtaagacatgtggcaaaaaaatatctaacggttgagattttaaattaaaaaacaaatatttgtttaataaaaatacataataata 13947063  T
Q  211 acaaacaactcat 223  Q
    |||||||| ||||    
T  13947064 acaaacaaatcat 13947076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 83 - 223
Target Start/End: Original strand, 37948802 - 37948942
Alignment:
Q  83 tccatttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaaaaacaaat 182  Q
    |||||||| | ||||||  |||||||  ||||| ||||||||||||||| |||| | |||||| | ||||| |||  |||||||||||||||||||||||    
T  37948802 tccatttaagttaagcttcatttactcaatttaaggtttggatgtaagacatgttgcaaaaaaatatctaacggttgagattttaaattaaaaaacaaat 37948901  T
Q  183 atttgtttaatgaaaatacataataataacaaacaactcat 223  Q
    ||||||||||| |||||||||||||||||||||||| ||||    
T  37948902 atttgtttaataaaaatacataataataacaaacaaatcat 37948942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 83 - 223
Target Start/End: Complemental strand, 33156741 - 33156602
Alignment:
Q  83 tccatttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaaaaacaaat 182  Q
    |||||||||||||||||  |||||||  |||||||||||||||  |||| |||||| ||||||  | |||| |||  |||||||||||||||||||||||    
T  33156741 tccatttaggctaagctttatttactccatttagggtttggatacaagacatgtggcaaaaaaaat-ctaacggttgagattttaaattaaaaaacaaat 33156643  T
Q  183 atttgtttaatgaaaatacataataataacaaacaactcat 223  Q
    ||||||||||| |||||||||||| ||||||||||| ||||    
T  33156642 atttgtttaataaaaatacataatgataacaaacaaatcat 33156602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 73 - 218
Target Start/End: Original strand, 39781074 - 39781213
Alignment:
Q  73 tcgggtacgttccatttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaatta 172  Q
    ||||||| ||| |||||||  |||| |  |||||||| |||||| |||||||||  ||| ||||||||||||||      | |||  |||||||||||||    
T  39781074 tcgggtatgtttcatttagattaagtttcatttacttcatttagagtttggatgcgagacatgtggtaaaaaag------acggttgagattttaaatta 39781167  T
Q  173 aaaaacaaatatttgtttaatgaaaatacataataataacaaacaa 218  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||    
T  39781168 aaaaacaaatatttgtttaataaaaatacataataataacaaacaa 39781213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 73 - 223
Target Start/End: Original strand, 49776823 - 49776972
Alignment:
Q  73 tcgggtacgttccatttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaatta 172  Q
    ||||||| | |||||||| ||||||||  |||||||  ||||||| |||||||| |||| ||||||||||||| | |  || |||  |||||||||||||    
T  49776823 tcgggtatgctccatttaagctaagctttatttactccatttaggatttggatgcaagacatgtggtaaaaaaatattgaacggttgagattttaaatta 49776922  T
Q  173 aaaaacaaatatttgtttaatgaaaatacataataataacaaacaactcat 223  Q
    ||| | || |||||||||||| |||||||||||||||||||||||| ||||    
T  49776923 aaagataa-tatttgtttaataaaaatacataataataacaaacaaatcat 49776972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 111 - 218
Target Start/End: Complemental strand, 43297110 - 43297003
Alignment:
Q  111 atttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaaaaacaaatatttgtttaatgaaaatacataataata 210  Q
    ||||||| |||||||| |||| |||||  |||||| | ||||| |||  ||||||||||||||||||||||||||| |||||| |||||||| |||||||    
T  43297110 atttaggatttggatgcaagacatgtgccaaaaaaatatctaacggttgagattttaaattaaaaaacaaatatttatttaataaaaatacacaataata 43297011  T
Q  211 acaaacaa 218  Q
    ||||||||    
T  43297010 acaaacaa 43297003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 117 - 223
Target Start/End: Complemental strand, 38338920 - 38338814
Alignment:
Q  117 ggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaaaaacaaatatttgtttaatgaaaatacataataataacaaac 216  Q
    ||||||||||||||| |||||| |||||| | |||||  ||  | |||||||||||||||| ||||||||||||||| |||||||||||||||| |||||    
T  38338920 ggtttggatgtaagacatgtggcaaaaaaatatctaacagttgaaattttaaattaaaaaataaatatttgtttaataaaaatacataataatatcaaac 38338821  T
Q  217 aactcat 223  Q
    || ||||    
T  38338820 aaatcat 38338814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 160 - 211
Target Start/End: Original strand, 42082904 - 42082955
Alignment:
Q  160 agattttaaattaaaaaacaaatatttgtttaatgaaaatacataataataa 211  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  42082904 agattttaaattaaaaaacaaatatttgtttaataaaaatacataataataa 42082955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 83 - 180
Target Start/End: Complemental strand, 49777110 - 49777013
Alignment:
Q  83 tccatttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaaaaacaa 180  Q
    |||||||||||||| ||| ||||| | ||||||||||||||||| |||| |||||  |||||| | ||||| |||  |||||||||||||||||||||    
T  49777110 tccatttaggctaaactccatttattctatttagggtttggatgcaagacatgtgacaaaaaaatatctaacggttgagattttaaattaaaaaacaa 49777013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 83 - 180
Target Start/End: Original strand, 33400869 - 33400968
Alignment:
Q  83 tccatttaggctaagctcaatttactttatttagggtttggatgtaagatatgtgg--taaaaaagtttctaatggtcaagattttaaattaaaaaacaa 180  Q
    |||||||| ||||||||| |||||||  ||||| ||||||||||||||  ||||||   |||||||| ||||||||| ||||||||||| ||||||||||    
T  33400869 tccatttaagctaagctccatttactccatttaaggtttggatgtaaggcatgtggcaaaaaaaagtatctaatggttaagattttaaactaaaaaacaa 33400968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 85 - 180
Target Start/End: Original strand, 34970001 - 34970096
Alignment:
Q  85 catttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaaaaacaa 180  Q
    |||||||| ||| ||| |||||||  ||||||| |||||||| |||| ||||||||||||| | ||||| |||  |||||||||||||||||||||    
T  34970001 catttaggttaaactccatttactcaatttaggatttggatgcaagacatgtggtaaaaaaatatctaacggttgagattttaaattaaaaaacaa 34970096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 111 - 176
Target Start/End: Complemental strand, 37949047 - 37948982
Alignment:
Q  111 atttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaaaa 176  Q
    |||||||| |||||||||||| |||||| ||| || | ||||||||| ||||||||||||||||||    
T  37949047 atttagggcttggatgtaagacatgtggcaaacaaatatctaatggttaagattttaaattaaaaa 37948982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 83 - 175
Target Start/End: Original strand, 5771922 - 5772014
Alignment:
Q  83 tccatttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaaa 175  Q
    ||||||||| |||||||  |||||||  |||||| ||||| ||||||||||| ||| |||||| | ||||| |||  ||||||||||||||||    
T  5771922 tccatttagactaagcttcatttactccatttagagtttgaatgtaagatatatggcaaaaaaatatctaacggttgagattttaaattaaaa 5772014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 117 - 180
Target Start/End: Original strand, 38338715 - 38338778
Alignment:
Q  117 ggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaaaaacaa 180  Q
    |||||||||||||||||| ||| |||||| | ||||| |||  |||||||||||||||||||||    
T  38338715 ggtttggatgtaagatatatggcaaaaaaatatctaacggttgagattttaaattaaaaaacaa 38338778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 85 - 177
Target Start/End: Original strand, 3385324 - 3385419
Alignment:
Q  85 catttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaag---tttctaatggtcaagattttaaattaaaaaa 177  Q
    |||||||||||||||   |||||   ||||||||||||||||||||| |||||| ||||||    | ||||| ||| |||||||||||||||||||    
T  3385324 catttaggctaagcttcgtttaccccatttagggtttggatgtaagacatgtggcaaaaaaaaaatatctaacggttaagattttaaattaaaaaa 3385419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 111 - 180
Target Start/End: Complemental strand, 13947181 - 13947112
Alignment:
Q  111 atttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaaaaacaa 180  Q
    |||||| |||||||||||||| ||||||||||||| | | ||| |||  | |||||||||||||||||||    
T  13947181 atttagcgtttggatgtaagacatgtggtaaaaaaatatgtaacggttgatattttaaattaaaaaacaa 13947112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 111 - 180
Target Start/End: Complemental strand, 27172058 - 27171989
Alignment:
Q  111 atttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaaaaacaa 180  Q
    ||||| ||||||||||||||| |||||| |||||| | ||||| |||  ||||||| |||||||||||||    
T  27172058 atttaaggtttggatgtaagacatgtggcaaaaaaatatctaacggttgagattttcaattaaaaaacaa 27171989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 145
Target Start/End: Original strand, 24882975 - 24883047
Alignment:
Q  73 tcgggtacgttccatttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaa 145  Q
    ||||||| | |||||||||||||| ||| |||||||  |||||||||||||||| |||| | |||| ||||||    
T  24882975 tcgggtatgctccatttaggctaatctccatttactccatttagggtttggatgcaagacacgtggcaaaaaa 24883047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 94; Significance: 5e-46; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 86 - 223
Target Start/End: Complemental strand, 21265846 - 21265709
Alignment:
Q  86 atttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaaaaacaaatatt 185  Q
    ||||| ||||||||| ||||||| ||||||||||||||||| |||| |||||| |||||||| |||||||||  ||||||||||||||||||||||||||    
T  21265846 atttaagctaagctccatttactctatttagggtttggatgcaagacatgtggcaaaaaagtatctaatggttgagattttaaattaaaaaacaaatatt 21265747  T
Q  186 tgtttaatgaaaatacataataataacaaacaactcat 223  Q
    |||||||| |||||||||||||||||||||||| ||||    
T  21265746 tgtttaataaaaatacataataataacaaacaaatcat 21265709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 73 - 223
Target Start/End: Original strand, 22563214 - 22563364
Alignment:
Q  73 tcgggtacgttccatttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaatta 172  Q
    ||||||| | |||||||||||||||||| |||||||  |||||||||||||||| |||| |||||| |||||| | | ||| |||  |||||||||||||    
T  22563214 tcgggtatgctccatttaggctaagctccatttactccatttagggtttggatgcaagacatgtggcaaaaaaatatttaacggttgagattttaaatta 22563313  T
Q  173 aaaaacaaatatttgtttaatgaaaatacataataataacaaacaactcat 223  Q
    ||||||||||||||||||||| ||| |||||||||||||||||||| ||||    
T  22563314 aaaaacaaatatttgtttaataaaactacataataataacaaacaaatcat 22563364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 89 - 223
Target Start/End: Original strand, 29892820 - 29892953
Alignment:
Q  89 taggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaaaaacaaatatttgt 188  Q
    |||| ||||||| ||||| |||||||||| |||||||||||||||||||| |||||| | |||||||||| |||||||||||||||||| |||||||| |    
T  29892820 taggttaagctccatttattttatttaggatttggatgtaagatatgtggaaaaaaa-tatctaatggtcgagattttaaattaaaaaataaatatttat 29892918  T
Q  189 ttaatgaaaatacataataataacaaacaactcat 223  Q
    ||||| |||||||||||||||||||||||| ||||    
T  29892919 ttaataaaaatacataataataacaaacaaatcat 29892953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 83 - 223
Target Start/End: Original strand, 20296276 - 20296416
Alignment:
Q  83 tccatttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaaaaacaaat 182  Q
    ||||||| ||||||| || |||||||| |||||||||||||||| |||| || ||| |||||||| || || ||| |||||||||||||||||| | |||    
T  20296276 tccattttggctaagatccatttacttcatttagggtttggatgaaagacatatggcaaaaaagtatccaacggttaagattttaaattaaaaaccgaat 20296375  T
Q  183 atttgtttaatgaaaatacataataataacaaacaactcat 223  Q
    ||||||||||| |||||||||||||||||||||||| ||||    
T  20296376 atttgtttaataaaaatacataataataacaaacaaatcat 20296416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 83 - 223
Target Start/End: Complemental strand, 17200364 - 17200225
Alignment:
Q  83 tccatttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaaaaacaaat 182  Q
    ||||||||| |||||||| |||||||  ||||| ||||||||||||||| |||||| |||||| | ||||| | |  | ||||||||||| |||||| ||    
T  17200364 tccatttag-ctaagctccatttactccatttaaggtttggatgtaagacatgtggcaaaaaaatatctaacgattgatattttaaattataaaacagat 17200266  T
Q  183 atttgtttaatgaaaatacataataataacaaacaactcat 223  Q
    ||||||||||| |||||||||||||||||||||||| ||||    
T  17200265 atttgtttaataaaaatacataataataacaaacaaatcat 17200225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 92 - 223
Target Start/End: Original strand, 156971 - 157101
Alignment:
Q  92 gctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaaaaacaaatatttgttta 191  Q
    ||||||||| |||||||  ||||||| ||||||||||||| || ||| | |||| | ||||| |||  |||||| |||||||||||||||||||||||||    
T  156971 gctaagctccatttactccatttaggatttggatgtaagacat-tggcagaaaaatatctaacggttgagatttgaaattaaaaaacaaatatttgttta 157069  T
Q  192 atgaaaatacataataataacaaacaactcat 223  Q
    || |||||||||||||||||||||||| ||||    
T  157070 ataaaaatacataataataacaaacaaatcat 157101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 73 - 223
Target Start/End: Original strand, 34645551 - 34645700
Alignment:
Q  73 tcgggtacgttccatttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaatta 172  Q
    ||||||| | || ||||||| |||| || |||||||  ||||||||| |||||| |||| |||||| |||||| | ||||| | |  |||||||||||||    
T  34645551 tcgggtatgctctatttaggttaagttctatttactccatttagggtatggatgcaagacatgtggcaaaaaa-tatctaacgattgagattttaaatta 34645649  T
Q  173 aaaaacaaatatttgtttaatgaaaatacataataataacaaacaactcat 223  Q
    |||||||||||||| |||||| |||||||||||||||||||||||| ||||    
T  34645650 aaaaacaaatatttatttaataaaaatacataataataacaaacaattcat 34645700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 83 - 180
Target Start/End: Original strand, 12232577 - 12232673
Alignment:
Q  83 tccatttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaaaaacaa 180  Q
    |||||||||||||||||| ||||||| |||||||||||||||||||||| |||||| |||||| | ||||| |||  |||||||||||||||||||||    
T  12232577 tccatttaggctaagctccatttactctatttagggtttggatgtaagacatgtggcaaaaaa-tatctaacggttgagattttaaattaaaaaacaa 12232673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 111 - 214
Target Start/End: Original strand, 8237886 - 8237988
Alignment:
Q  111 atttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaaaaacaaatatttgtttaatgaaaatacataataata 210  Q
    ||||||| || ||||| |||| |||||| |||||||| |||||| ||  |||||||||||||||| ||||||||||||||||| ||||||||||||||||    
T  8237886 atttaggattaggatgcaagacatgtggcaaaaaagtatctaatagttgagattttaaattaaaa-acaaatatttgtttaataaaaatacataataata 8237984  T
Q  211 acaa 214  Q
    ||||    
T  8237985 acaa 8237988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 111 - 223
Target Start/End: Complemental strand, 12232821 - 12232709
Alignment:
Q  111 atttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaaaaacaaatatttgtttaatgaaaatacataataata 210  Q
    ||||||| ||| |||| |||| |||||| |||||| | |||||  |   |||| ||||||||||||||||||||||||||||| ||||||||||||||||    
T  12232821 atttaggatttagatgcaagacatgtggcaaaaaaatatctaacaggtgagatattaaattaaaaaacaaatatttgtttaataaaaatacataataata 12232722  T
Q  211 acaaacaactcat 223  Q
    |||||||| ||||    
T  12232721 acaaacaaatcat 12232709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 73 - 180
Target Start/End: Original strand, 17200082 - 17200189
Alignment:
Q  73 tcgggtacgttccatttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaatta 172  Q
    ||||||| | ||||||||||| |||||| |||||||  ||||||| ||||||||||||| |||||| ||| || | |||||||||  |||||||||||||    
T  17200082 tcgggtatgctccatttaggcaaagctccatttactccatttaggatttggatgtaagacatgtggcaaataaatatctaatggttgagattttaaatta 17200181  T
Q  173 aaaaacaa 180  Q
    ||||||||    
T  17200182 aaaaacaa 17200189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 160 - 218
Target Start/End: Original strand, 13979723 - 13979781
Alignment:
Q  160 agattttaaattaaaaaacaaatatttgtttaatgaaaatacataataataacaaacaa 218  Q
    |||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  13979723 agattttaaattaaaaaataaatatttgtttaataaaaatacataataataacaaacaa 13979781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 83 - 180
Target Start/End: Original strand, 21265577 - 21265673
Alignment:
Q  83 tccatttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaaaaacaa 180  Q
    ||||||||| ||||||||||||||||  |||||||||||||||| |||| |||||| |||||| | ||||| |||  |||||||||||||||||||||    
T  21265577 tccatttagactaagctcaatttactccatttagggtttggatgcaagacatgtggcaaaaaa-tatctaacggttgagattttaaattaaaaaacaa 21265673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 73 - 180
Target Start/End: Complemental strand, 29893094 - 29892989
Alignment:
Q  73 tcgggtacgttccatttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaatta 172  Q
    ||||||| | |||||||||||||||||| ||||||| ||||||||||||||||| |||| |||||  | |||| | ||||| |||  |||||||||||||    
T  29893094 tcgggtatgctccatttaggctaagctctatttactctatttagggtttggatgcaagacatgtg--acaaaaatatctaacggttgagattttaaatta 29892997  T
Q  173 aaaaacaa 180  Q
    ||||||||    
T  29892996 aaaaacaa 29892989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 73 - 180
Target Start/End: Complemental strand, 22563507 - 22563400
Alignment:
Q  73 tcgggtacgttccatttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaatta 172  Q
    ||||||| | |||||||||||||| ||| |||||||  ||||||| |||||||| |||| |||||| |||||| | ||||| |||  |||||||||||||    
T  22563507 tcgggtatgctccatttaggctaaactccatttactccatttaggatttggatgcaagacatgtggcaaaaaaatatctaacggttgagattttaaatta 22563408  T
Q  173 aaaaacaa 180  Q
    ||||||||    
T  22563407 aaaaacaa 22563400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 73 - 166
Target Start/End: Original strand, 4371458 - 4371551
Alignment:
Q  73 tcgggtacgttccatttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagatttt 166  Q
    ||||||| | |||||||||||||||||| |||||||  |||||||||||||||| |||| |||||| |||||| | |||||||||  |||||||    
T  4371458 tcgggtatgctccatttaggctaagctccatttactccatttagggtttggatgcaagacatgtggcaaaaaaatatctaatggttgagatttt 4371551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 73 - 180
Target Start/End: Complemental strand, 34645843 - 34645736
Alignment:
Q  73 tcgggtacgttccatttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaatta 172  Q
    |||||||  ||||||||||||| | ||| ||||| |  ||||||||||||||||||||| |||||| || ||| | ||||| |||  |||||||||||||    
T  34645843 tcgggtatattccatttaggcttaactccatttattccatttagggtttggatgtaagacatgtggcaagaaaatatctaacggttgagattttaaatta 34645744  T
Q  173 aaaaacaa 180  Q
    ||||||||    
T  34645743 aaaaacaa 34645736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 86 - 180
Target Start/End: Complemental strand, 20296700 - 20296606
Alignment:
Q  86 atttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaaaaacaa 180  Q
    ||||||||||||||| |||||||  ||||| |  |||||||||||| |||||| |||||| | || || |||  |||||||||||||||||||||    
T  20296700 atttaggctaagctccatttactccatttaagaattggatgtaagacatgtggcaaaaaaatatccaacggttgagattttaaattaaaaaacaa 20296606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 121
Target Start/End: Complemental strand, 33491455 - 33491417
Alignment:
Q  83 tccatttaggctaagctcaatttactttatttagggttt 121  Q
    |||||||||||||||||| ||||||| ||||||||||||    
T  33491455 tccatttaggctaagctccatttactctatttagggttt 33491417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 92; Significance: 8e-45; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 83 - 218
Target Start/End: Original strand, 14999185 - 14999320
Alignment:
Q  83 tccatttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaaaaacaaat 182  Q
    ||||||||||||||||||||||||||  |||||||||||||||| |||| |||||| || ||||| |||||| ||  |||||||||||||||||||||||    
T  14999185 tccatttaggctaagctcaatttactccatttagggtttggatgcaagacatgtggcaataaagtatctaatagttgagattttaaattaaaaaacaaat 14999284  T
Q  183 atttgtttaatgaaaatacataataataacaaacaa 218  Q
    ||||||||||| ||||||||||||||||||||||||    
T  14999285 atttgtttaataaaaatacataataataacaaacaa 14999320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 73 - 223
Target Start/End: Complemental strand, 41722124 - 41721974
Alignment:
Q  73 tcgggtacgttccatttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaatta 172  Q
    ||||||| ||| |||||||||||||||| ||||||||||||||| | ||||||| |||| |||| | |||||| | ||||| ||| |||||||||||| |    
T  41722124 tcgggtatgtttcatttaggctaagctctatttactttatttagagcttggatgcaagacatgttgcaaaaaaatatctaacggttaagattttaaataa 41722025  T
Q  173 aaaaacaaatatttgtttaatgaaaatacataataataacaaacaactcat 223  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| ||||    
T  41722024 aaaaacaaatatttgtttaataaaaatacataataataacaaacaaatcat 41721974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 73 - 223
Target Start/End: Complemental strand, 43801768 - 43801618
Alignment:
Q  73 tcgggtacgttccatttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaatta 172  Q
    ||||||| |||||||||||||||||||| |||||||  |||||| ||||||||| ||||||||||| |||||| | |||||  ||  | |||||||||||    
T  43801768 tcgggtatgttccatttaggctaagctccatttactccatttagagtttggatgcaagatatgtggcaaaaaaatatctaacagttgaaattttaaatta 43801669  T
Q  173 aaaaacaaatatttgtttaatgaaaatacataataataacaaacaactcat 223  Q
    |||||| |||||||||||||| |||||||||||||||||||||||| ||||    
T  43801668 aaaaactaatatttgtttaataaaaatacataataataacaaacaaatcat 43801618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 102 - 215
Target Start/End: Complemental strand, 40621795 - 40621682
Alignment:
Q  102 atttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaaaaacaaatatttgtttaatgaaaatac 201  Q
    |||||||| |||||||||||| |||||| | ||||||||||||| | ||||| |||  |||||||||||||||||||||||||||||||||| |||||||    
T  40621795 atttacttcatttagggtttgaatgtaaaacatgtggtaaaaaaatatctaacggttgagattttaaattaaaaaacaaatatttgtttaataaaaatac 40621696  T
Q  202 ataataataacaaa 215  Q
    ||||||||||||||    
T  40621695 ataataataacaaa 40621682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 83 - 223
Target Start/End: Complemental strand, 41404047 - 41403906
Alignment:
Q  83 tccatttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaa-aaagtttctaatggtcaagattttaaattaaaaaacaaa 181  Q
    |||||||||| |||| |||||||||| ||||||||||||||||| |||| |||||  ||| ||| | | ||| |||  |||||||||||| |||||||||    
T  41404047 tccatttaggttaagttcaatttactctatttagggtttggatgcaagacatgtgacaaacaaaatatttaacggttgagattttaaatttaaaaacaaa 41403948  T
Q  182 tatttgtttaatgaaaatacataataataacaaacaactcat 223  Q
    |||||||||||| |||||||||||||||||||||||| ||||    
T  41403947 tatttgtttaataaaaatacataataataacaaacaaatcat 41403906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 102 - 223
Target Start/End: Complemental strand, 6911297 - 6911176
Alignment:
Q  102 atttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaaaaacaaatatttgtttaatgaaaatac 201  Q
    |||||||  |||||||||||||||| |||| |||||| |||||| | || || |||  |||||||||||||||||||||||||||||||||| |||||||    
T  6911297 atttactccatttagggtttggatgcaagacatgtggcaaaaaaatatccaacggttgagattttaaattaaaaaacaaatatttgtttaataaaaatac 6911198  T
Q  202 ataataataacaaacaactcat 223  Q
    |||||||| |||||||| ||||    
T  6911197 ataataattacaaacaaatcat 6911176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 85 - 223
Target Start/End: Complemental strand, 16325131 - 16324991
Alignment:
Q  85 catttaggctaagctcaatttactttatttagggtttggatgtaagatatgt--ggtaaaaaagtttctaatggtcaagattttaaattaaaaaacaaat 182  Q
    |||||| || || ||| |||||||  |||||||||||||||| |||| ||||  ||||||||| | ||||| |||  |||||||||||||||||||||||    
T  16325131 catttaagccaaactccatttactccatttagggtttggatgcaagacatgtatggtaaaaaaatatctaacggttgagattttaaattaaaaaacaaat 16325032  T
Q  183 atttgtttaatgaaaatacataataataacaaacaactcat 223  Q
    |||||||| || |||||||||||||||||||||||| ||||    
T  16325031 atttgtttgataaaaatacataataataacaaacaaatcat 16324991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 97 - 218
Target Start/End: Complemental strand, 22781325 - 22781206
Alignment:
Q  97 gctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaaaaacaaatatttgtttaatgaa 196  Q
    |||| |||||||  |||||||||||||||| ||||||||||  ||||||  || ||| |||  |||||||||||||||||||||||||||||||||| ||    
T  22781325 gctccatttactcaatttagggtttggatgcaagatatgtgacaaaaaatatt-taacggttgagattttaaattaaaaaacaaatatttgtttaat-aa 22781228  T
Q  197 aatacataataataacaaacaa 218  Q
    |||| |||||||||||||||||    
T  22781227 aatatataataataacaaacaa 22781206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 161 - 223
Target Start/End: Complemental strand, 8489582 - 8489520
Alignment:
Q  161 gattttaaattaaaaaacaaatatttgtttaatgaaaatacataataataacaaacaactcat 223  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||    
T  8489582 gattttaaattaaaaaacaaatatttgtttaataaaaatacataataataacaaacaaatcat 8489520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 83 - 180
Target Start/End: Original strand, 6911043 - 6911140
Alignment:
Q  83 tccatttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaaaaacaa 180  Q
    |||||||||||||||||| |||||||  ||||||||||||||||||||| |||||| |||||| | ||||| | |  |||||||||||||||||||||    
T  6911043 tccatttaggctaagctccatttactccatttagggtttggatgtaagacatgtggcaaaaaaatatctaacgattgagattttaaattaaaaaacaa 6911140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 73 - 171
Target Start/End: Complemental strand, 15009155 - 15009057
Alignment:
Q  73 tcgggtacgttccatttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaatt 171  Q
    ||||||| | |||||||||||||||||  |||||||  ||||||||||||||||||||| |||||| |||||||| |||||  || |||||||||||||    
T  15009155 tcgggtatgctccatttaggctaagcttcatttactccatttagggtttggatgtaagacatgtggcaaaaaagtatctaacagttaagattttaaatt 15009057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 83 - 180
Target Start/End: Original strand, 16324858 - 16324955
Alignment:
Q  83 tccatttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaaaaacaa 180  Q
    |||||||||||||||||||||||| |  |||||||||||||||| |||| |||||  |||||| | ||||| |||  |||||||||||||||||||||    
T  16324858 tccatttaggctaagctcaatttaatccatttagggtttggatgcaagacatgtgacaaaaaaatatctaacggttgagattttaaattaaaaaacaa 16324955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 83 - 180
Target Start/End: Original strand, 8489387 - 8489484
Alignment:
Q  83 tccatttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaaaaacaa 180  Q
    |||||||||| ||||||  ||||| |  ||||||||||||||||||||| |||||| |||||| | ||||| | |  |||||||||||||||||||||    
T  8489387 tccatttaggttaagcttcatttattccatttagggtttggatgtaagacatgtggcaaaaaaatatctaacgattgagattttaaattaaaaaacaa 8489484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 85 - 180
Target Start/End: Original strand, 41403775 - 41403870
Alignment:
Q  85 catttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaaaaacaa 180  Q
    |||||||  |||||||||||||||  ||||||| ||| |||||||||||||||  |||||| | |||||  ||  |||||||||||||||||||||    
T  41403775 catttagattaagctcaatttactccatttaggattttgatgtaagatatgtgacaaaaaaatatctaacagttgagattttaaattaaaaaacaa 41403870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 145
Target Start/End: Original strand, 43801486 - 43801546
Alignment:
Q  85 catttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaa 145  Q
    |||||||||||| ||  |||||||  |||||| |||||||||||||| |||||| ||||||    
T  43801486 catttaggctaaacttcatttactccatttagagtttggatgtaagacatgtggcaaaaaa 43801546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 85; Significance: 1e-40; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 83 - 223
Target Start/End: Complemental strand, 43797639 - 43797499
Alignment:
Q  83 tccatttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaaaaacaaat 182  Q
    ||||||||||||||| || ||||||| ||||||||||||||||| |||| |||||  |||||||| || || ||| |||||||||||||||||| |||||    
T  43797639 tccatttaggctaagatccatttactctatttagggtttggatgaaagacatgtgacaaaaaagtatccaacggttaagattttaaattaaaaaccaaat 43797540  T
Q  183 atttgtttaatgaaaatacataataataacaaacaactcat 223  Q
    ||||||||||| |||||||||||||||||||||||| ||||    
T  43797539 atttgtttaataaaaatacataataataacaaacaaatcat 43797499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 73 - 218
Target Start/End: Complemental strand, 4041480 - 4041335
Alignment:
Q  73 tcgggtacgttccatttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaatta 172  Q
    ||||||| | |||||||||||||||||  |||||||  |||||||||||||||| |||| |||||| |||||| | ||||| |||  |||||||||||||    
T  4041480 tcgggtatgctccatttaggctaagcttcatttactccatttagggtttggatgcaagacatgtggcaaaaaaatatctaacggttgagattttaaatta 4041381  T
Q  173 aaaaacaaatatttgtttaatgaaaatacataataataacaaacaa 218  Q
    ||||||||||||||||||| | ||||||||||||||||||||||||    
T  4041380 aaaaacaaatatttgtttactaaaaatacataataataacaaacaa 4041335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 86 - 223
Target Start/End: Complemental strand, 29828965 - 29828828
Alignment:
Q  86 atttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaaaaacaaatatt 185  Q
    ||||| ||||||||| ||||| |  ||||||| |||||||||||||||||||| |||||| | ||||| |||  ||||||||||||||||||||||||||    
T  29828965 atttaagctaagctccatttattccatttaggatttggatgtaagatatgtggcaaaaaaatatctaacggttgagattttaaattaaaaaacaaatatt 29828866  T
Q  186 tgtttaatgaaaatacataataataacaaacaactcat 223  Q
    |||||||| |||||||||||||||||||||||| ||||    
T  29828865 tgtttaataaaaatacataataataacaaacaaatcat 29828828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 97 - 223
Target Start/End: Complemental strand, 46883685 - 46883559
Alignment:
Q  97 gctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaaaaacaaatatttgtttaatgaa 196  Q
    |||| |||||||  |||||||||||||||| |||| |||||| |||||| | ||||| |||  |||||||||||||||||||||||||||||||||| ||    
T  46883685 gctccatttactccatttagggtttggatgcaagacatgtggcaaaaaaatatctaacggttgagattttaaattaaaaaacaaatatttgtttaataaa 46883586  T
Q  197 aatacataataataacaaacaactcat 223  Q
    |||||||||||||||||||||| ||||    
T  46883585 aatacataataataacaaacaaatcat 46883559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 84 - 223
Target Start/End: Original strand, 53197003 - 53197142
Alignment:
Q  84 ccatttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaaaaacaaata 183  Q
    ||||||| ||||| ||  ||||||| ||||||||||||||||| || | |||||| |||||| | ||||| |||  ||||||||||||||||||||||||    
T  53197003 ccatttaagctaaacttcatttactctatttagggtttggatgcaaaacatgtggcaaaaaaatatctaacggttgagattttaaattaaaaaacaaata 53197102  T
Q  184 tttgtttaatgaaaatacataataataacaaacaactcat 223  Q
    ||| |||||| |||||||||||||||||||||||| ||||    
T  53197103 tttatttaataaaaatacataataataacaaacaaatcat 53197142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 73 - 223
Target Start/End: Original strand, 38499823 - 38499972
Alignment:
Q  73 tcgggtacgttccatttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaatta 172  Q
    ||||||| | |||||||||||||||||| |||||||  |||||||||||||||  |||| |||||| ||||||  | |||| |||  |||||||||| ||    
T  38499823 tcgggtatgctccatttaggctaagctccatttactccatttagggtttggatacaagacatgtggcaaaaaaaat-ctaacggttgagattttaaacta 38499921  T
Q  173 aaaaacaaatatttgtttaatgaaaatacataataataacaaacaactcat 223  Q
    |||| |||||||||||||||| |||||||||||||||||||||||| ||||    
T  38499922 aaaaccaaatatttgtttaataaaaatacataataataacaaacaaatcat 38499972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 94 - 223
Target Start/End: Complemental strand, 25349986 - 25349857
Alignment:
Q  94 taagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaaaaacaaatatttgtttaat 193  Q
    ||||||| ||||| | |||||||||||||||||||||| |||||  ||||||   ||||| |||  |||||||||||||||||| ||||||||||||||     
T  25349986 taagctccatttattctatttagggtttggatgtaagacatgtgccaaaaaaacatctaacggttgagattttaaattaaaaaataaatatttgtttaac 25349887  T
Q  194 gaaaatacataataataacaaacaactcat 223  Q
     |||||||||||||||||||||||||||||    
T  25349886 aaaaatacataataataacaaacaactcat 25349857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 97 - 223
Target Start/End: Complemental strand, 8799589 - 8799463
Alignment:
Q  97 gctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaaaaacaaatatttgtttaatgaa 196  Q
    |||| |||||||  ||||||||||| |||| |||| |||||| |||||| | | ||| |||  |||||||||||||||||||||||||||||||||| ||    
T  8799589 gctccatttactccatttagggtttagatgcaagacatgtggcaaaaaaatatataacggttgagattttaaattaaaaaacaaatatttgtttaataaa 8799490  T
Q  197 aatacataataataacaaacaactcat 223  Q
    |||||||||||||||||||||| ||||    
T  8799489 aatacataataataacaaacaaatcat 8799463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 111 - 218
Target Start/End: Original strand, 43797685 - 43797792
Alignment:
Q  111 atttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaaaaacaaatatttgtttaatgaaaatacataataata 210  Q
    ||||| ||||||||||||||| |||||| |||||| | |||||||||  | |||||||||||||||| ||||||||||||||| ||| ||||||||||||    
T  43797685 atttaaggtttggatgtaagacatgtggcaaaaaaatatctaatggttgaaattttaaattaaaaaataaatatttgtttaataaaattacataataata 43797784  T
Q  211 acaaacaa 218  Q
    ||||||||    
T  43797785 acaaacaa 43797792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 73 - 181
Target Start/End: Complemental strand, 38500118 - 38500011
Alignment:
Q  73 tcgggtacgttccatttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaatta 172  Q
    ||||||| | |||||||||||||||||| |||||||  | ||||||||||||||||||| |||||| |||||| | |||||  ||  |||||||||||||    
T  38500118 tcgggtatgctccatttaggctaagctccatttactccaattagggtttggatgtaagacatgtgg-aaaaaaatatctaacagttgagattttaaatta 38500020  T
Q  173 aaaaacaaa 181  Q
    |||||||||    
T  38500019 aaaaacaaa 38500011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 74 - 180
Target Start/End: Complemental strand, 53197279 - 53197175
Alignment:
Q  74 cgggtacgttccatttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaa 173  Q
    |||||| | |||||||||||||||||  |||||||  |||||||||||||||| |||| |||||| |||||| | |||||  ||||||||||||||||||    
T  53197279 cgggtatgctccatttaggctaagcttcatttactccatttagggtttggatgcaagacatgtggcaaaaaa-tatctaa-cgtcaagattttaaattaa 53197182  T
Q  174 aaaacaa 180  Q
    |||||||    
T  53197181 aaaacaa 53197175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 83 - 180
Target Start/End: Original strand, 43797366 - 43797463
Alignment:
Q  83 tccatttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaaaaacaa 180  Q
    |||||||||||||||||| |||||||  ||||| |||||||||| |||| |||||| |||||| | || || |||  |||||||||||||||||||||    
T  43797366 tccatttaggctaagctccatttactccatttaaggtttggatgcaagacatgtggcaaaaaaatatccaacggttgagattttaaattaaaaaacaa 43797463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 111 - 218
Target Start/End: Complemental strand, 20383294 - 20383184
Alignment:
Q  111 atttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaaaaacaa--atat-ttgtttaatgaaaatacataata 207  Q
    |||||| ||||||||| ||||  |||||||||||||| ||||| |||  |||||||||||||||||| ||  | || || |||||| |||||||||||||    
T  20383294 atttagagtttggatgaaagacgtgtggtaaaaaagtatctaacggttgagattttaaattaaaaaaaaataaaatattatttaataaaaatacataata 20383195  T
Q  208 ataacaaacaa 218  Q
    |||||||||||    
T  20383194 ataacaaacaa 20383184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 111 - 180
Target Start/End: Original strand, 46883457 - 46883526
Alignment:
Q  111 atttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaaaaacaa 180  Q
    ||||||||||||||||||||| |||||| |||||| | ||||| |||  |||||||||||||||||||||    
T  46883457 atttagggtttggatgtaagacatgtggcaaaaaaatatctaacggttgagattttaaattaaaaaacaa 46883526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 73 - 177
Target Start/End: Original strand, 8799321 - 8799425
Alignment:
Q  73 tcgggtacgttccatttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaatta 172  Q
    ||||||| | ||||||||||||| |||| |||||||  |||||||||||||||| |||| |||||| |||||  | |||||  ||  |||||||||||||    
T  8799321 tcgggtatgctccatttaggctaggctccatttactccatttagggtttggatgcaagacatgtggcaaaaatatatctaacagttgagattttaaatta 8799420  T
Q  173 aaaaa 177  Q
    |||||    
T  8799421 aaaaa 8799425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 61
Target Start/End: Complemental strand, 25350053 - 25350009
Alignment:
Q  19 aatatgagataccaacattaccaccct--catcatggtagcatct 61  Q
    |||||||||||||||||||||||||||  || |||||||||||||    
T  25350053 aatatgagataccaacattaccaccctcacaccatggtagcatct 25350009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 77; Significance: 7e-36; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 83 - 223
Target Start/End: Complemental strand, 22748875 - 22748735
Alignment:
Q  83 tccatttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaaaaacaaat 182  Q
    ||||||||| ||||| || |||||||  ||||||| |||||||| |||| ||||||||||||||  || || ||| |||||||||||||||||| |||||    
T  22748875 tccatttagactaagatccatttactccatttaggatttggatgaaagacatgtggtaaaaaagcatccaacggttaagattttaaattaaaaatcaaat 22748776  T
Q  183 atttgtttaatgaaaatacataataataacaaacaactcat 223  Q
    ||||||||||| |||||||||||||||||||||||| ||||    
T  22748775 atttgtttaataaaaatacataataataacaaacaaatcat 22748735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 73 - 223
Target Start/End: Original strand, 16125526 - 16125676
Alignment:
Q  73 tcgggtacgttccatttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaatta 172  Q
    ||||||| | |||||||||||||| ||  ||||| || |||||||||||||||| |||| |||||| |||||| | | ||| | |  | |||||||||||    
T  16125526 tcgggtatgctccatttaggctaaacttcatttatttcatttagggtttggatgcaagacatgtggcaaaaaaatatttaacgattgaaattttaaatta 16125625  T
Q  173 aaaaacaaatatttgtttaatgaaaatacataataataacaaacaactcat 223  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| ||||    
T  16125626 aaaaacaaatatttgtttaataaaaatacataataataacaaacaaatcat 16125676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 117 - 220
Target Start/End: Original strand, 11014369 - 11014472
Alignment:
Q  117 ggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaaaaacaaatatttgtttaatgaaaatacataataataacaaac 216  Q
    ||||||||||||||| ||||| ||||||| | | |||  ||  |||||||||||||||||  ||||||||||||||| |||| |||||||||||||||||    
T  11014369 ggtttggatgtaagacatgtgataaaaaaatatttaacagttgagattttaaattaaaaagtaaatatttgtttaataaaaacacataataataacaaac 11014468  T
Q  217 aact 220  Q
    ||||    
T  11014469 aact 11014472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 111 - 215
Target Start/End: Complemental strand, 24565361 - 24565259
Alignment:
Q  111 atttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaaaaacaaatatttgtttaatgaaaatacataataata 210  Q
    ||||||||||| ||||||||| |||||| ||||||   ||||| |||  |||||||||||||||||  ||| | ||||||||| ||||||||||||||||    
T  24565361 atttagggtttagatgtaagacatgtggcaaaaaaacatctaacggttgagattttaaattaaaaa--aaaaaattgtttaataaaaatacataataata 24565264  T
Q  211 acaaa 215  Q
    |||||    
T  24565263 acaaa 24565259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 73 - 180
Target Start/End: Original strand, 22748592 - 22748699
Alignment:
Q  73 tcgggtacgttccatttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaatta 172  Q
    ||||||| | || |||||||||| |||| |||||||  ||||| | |||||||| |||| |||||| |||||| | || || |||  |||||||||||||    
T  22748592 tcgggtatgctcaatttaggctatgctccatttactccatttaagatttggatgcaagacatgtggcaaaaaaatatccaacggttgagattttaaatta 22748691  T
Q  173 aaaaacaa 180  Q
    ||||||||    
T  22748692 aaaaacaa 22748699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 106 - 177
Target Start/End: Original strand, 33277343 - 33277414
Alignment:
Q  106 actttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaaaaa 177  Q
    |||| |||||||||||||||| |||| |||||| |||||| | | |||||||  ||||||||||||||||||    
T  33277343 acttcatttagggtttggatgcaagacatgtggcaaaaaaatatttaatggttgagattttaaattaaaaaa 33277414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 172 - 215
Target Start/End: Complemental strand, 34851504 - 34851461
Alignment:
Q  172 aaaaaacaaatatttgtttaatgaaaatacataataataacaaa 215  Q
    ||||||||||||| |||||||| |||||||||||||||||||||    
T  34851504 aaaaaacaaatatgtgtttaataaaaatacataataataacaaa 34851461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 210
Target Start/End: Complemental strand, 33277505 - 33277465
Alignment:
Q  170 ttaaaaaacaaatatttgtttaatgaaaatacataataata 210  Q
    |||||||||||||||||||||||| || |||||||||||||    
T  33277505 ttaaaaaacaaatatttgtttaattaagatacataataata 33277465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 77; Significance: 7e-36; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 75 - 223
Target Start/End: Complemental strand, 36955589 - 36955441
Alignment:
Q  75 gggtacgttccatttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaa 174  Q
    ||||||| |||||||||||||||||| ||||||| |||||||||||||| || |||| |||||| |||||| | ||||| |||   ||||||||||||||    
T  36955589 gggtacgctccatttaggctaagctctatttactctatttagggtttggttgcaagacatgtggcaaaaaaatatctaacggttgcgattttaaattaaa 36955490  T
Q  175 aaacaaatatttgtttaatgaaaatacataataataacaaacaactcat 223  Q
    |||||||||| |  ||||| |||||||||||||||||||||||| ||||    
T  36955489 aaacaaatatctcattaataaaaatacataataataacaaacaaatcat 36955441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 73 - 223
Target Start/End: Original strand, 31193969 - 31194119
Alignment:
Q  73 tcgggtacgttccatttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaatta 172  Q
    ||||||| | |||||||||||||||||| |||||||  ||||| |||||||||| |||| |||||| |||||| | || || |||  |||||||||||||    
T  31193969 tcgggtatgctccatttaggctaagctccatttactccatttaaggtttggatgcaagacatgtggcaaaaaaatatccaacggttgagattttaaatta 31194068  T
Q  173 aaaaacaaatatttgtttaatgaaaatacataataataacaaacaactcat 223  Q
    ||||  ||||||||||||||| |||||||||||||||||||||||| ||||    
T  31194069 aaaactaaatatttgtttaataaaaatacataataataacaaacaaatcat 31194119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 91 - 223
Target Start/End: Original strand, 39634827 - 39634957
Alignment:
Q  91 ggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaaaaacaaatatttgttt 190  Q
    |||||||||| |||||||| ||| ||||||||||||||||| |||||| ||||||  | |||| |||  |||||||||||||||||||||||||||||||    
T  39634827 ggctaagctccatttacttcatt-agggtttggatgtaagacatgtggcaaaaaaaat-ctaacggttgagattttaaattaaaaaacaaatatttgttt 39634924  T
Q  191 aatgaaaatacataataataacaaacaactcat 223  Q
    ||| |||||||||||||||||||||||| ||||    
T  39634925 aataaaaatacataataataacaaacaaatcat 39634957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 83 - 218
Target Start/End: Complemental strand, 14076956 - 14076820
Alignment:
Q  83 tccatttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaaaaacaaat 182  Q
    ||||||||||||||| || |||||||  |||||||||||||||| |||| |||||| |||||| | | ||| |||  |||||||||||||||||||||||    
T  14076956 tccatttaggctaagttctatttactccatttagggtttggatgcaagacatgtggcaaaaaaatatttaacggttgagattttaaattaaaaaacaaat 14076857  T
Q  183 a-tttgtttaatgaaaatacataataataacaaacaa 218  Q
    | ||| |||||| ||||||||||||||||||||||||    
T  14076856 attttttttaataaaaatacataataataacaaacaa 14076820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 111 - 223
Target Start/End: Original strand, 42546391 - 42546503
Alignment:
Q  111 atttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaaaaacaaatatttgtttaatgaaaatacataataata 210  Q
    |||||||||||||||| |||| || ||| |||||| | ||||| |||  |||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  42546391 atttagggtttggatgcaagacatttggcaaaaaaatatctaacggttgagattttaaattaaaaaacaaatatttgtttaataaaaatacataataata 42546490  T
Q  211 acaaacaactcat 223  Q
    |||||||| ||||    
T  42546491 acaaacaaatcat 42546503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 160 - 223
Target Start/End: Original strand, 32346988 - 32347051
Alignment:
Q  160 agattttaaattaaaaaacaaatatttgtttaatgaaaatacataataataacaaacaactcat 223  Q
    |||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||    
T  32346988 agattttaaattaaaaaacaaatatttgtttaataaaaatatataataataacaaacaaatcat 32347051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 163 - 223
Target Start/End: Complemental strand, 304218 - 304158
Alignment:
Q  163 ttttaaattaaaaaacaaatatttgtttaatgaaaatacataataataacaaacaactcat 223  Q
    |||||||||||||||||||||||| |||||| |||||||||||||||||||||||| ||||    
T  304218 ttttaaattaaaaaacaaatatttatttaataaaaatacataataataacaaacaaatcat 304158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 73 - 180
Target Start/End: Original strand, 17370071 - 17370178
Alignment:
Q  73 tcgggtacgttccatttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaatta 172  Q
    ||||||| | |||||||| ||||| ||| |||||||  |||||||||||||||| |||| |||||| |||||| | ||||| |||  |||||||||||||    
T  17370071 tcgggtatgctccatttatgctaaactccatttactccatttagggtttggatgcaagacatgtggcaaaaaaatatctaacggttgagattttaaatta 17370170  T
Q  173 aaaaacaa 180  Q
    ||||||||    
T  17370171 aaaaacaa 17370178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 73 - 180
Target Start/End: Complemental strand, 31194262 - 31194155
Alignment:
Q  73 tcgggtacgttccatttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaatta 172  Q
    ||||||| | |||||||||||||||||| |||||||  ||||| |||||||||| |||| |||||| |||||| | || || |||  |||||||||||||    
T  31194262 tcgggtatgctccatttaggctaagctccatttactccatttaaggtttggatgcaagacatgtggcaaaaaaatatccaacggttgagattttaaatta 31194163  T
Q  173 aaaaacaa 180  Q
    ||||||||    
T  31194162 aaaaacaa 31194155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 170 - 223
Target Start/End: Complemental strand, 17370267 - 17370214
Alignment:
Q  170 ttaaaaaacaaatatttgtttaatgaaaatacataataataacaaacaactcat 223  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| ||||    
T  17370267 ttaaaaaacaaatatttgtttaataaaaatacataataataacaaacaaatcat 17370214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 83 - 180
Target Start/End: Original strand, 8754672 - 8754769
Alignment:
Q  83 tccatttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaaaaacaa 180  Q
    ||||||||| |||| ||| ||||||| ||||||||||||||||| |||| |||||| ||||||   ||||| |||  | |||||||||||||||||||    
T  8754672 tccatttagactaaactccatttactctatttagggtttggatggaagacatgtggcaaaaaaagatctaacggttgaaattttaaattaaaaaacaa 8754769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 86 - 180
Target Start/End: Complemental strand, 39635086 - 39634993
Alignment:
Q  86 atttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaaaaacaa 180  Q
    ||||||||||||||  || ||||  ||||||||||||||||||||||||| || |||||| | | ||| |||  |||||||||||||||||||||    
T  39635086 atttaggctaagcttcatatactc-atttagggtttggatgtaagatatgcggcaaaaaaatatgtaacggttgagattttaaattaaaaaacaa 39634993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 83 - 180
Target Start/End: Complemental strand, 32347184 - 32347087
Alignment:
Q  83 tccatttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaaaaacaa 180  Q
    |||||||||||||||||| | |||||  ||||| ||||||||||||||| |||||  |||||| | |||||  ||  |||| ||||||||||||||||    
T  32347184 tccatttaggctaagctccaattactccatttaaggtttggatgtaagacatgtgacaaaaaaatatctaactgtttagatcttaaattaaaaaacaa 32347087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 137
Target Start/End: Original strand, 36955307 - 36955371
Alignment:
Q  73 tcgggtacgttccatttaggctaagctcaatttactttatttagggtttggatgtaagatatgtg 137  Q
    ||||||| | |||||||||||||||||  |||||||  |||||||||||||||| |||| |||||    
T  36955307 tcgggtaggctccatttaggctaagcttcatttactccatttagggtttggatgcaagacatgtg 36955371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 180
Target Start/End: Complemental strand, 42546617 - 42546539
Alignment:
Q  102 atttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaaaaacaa 180  Q
    |||||||  |||||||||||||||| |||| |||||  ||||||   ||||| |||  |||||||||||||||||||||    
T  42546617 atttactccatttagggtttggatgcaagacatgtgacaaaaaaacatctaacggttgagattttaaattaaaaaacaa 42546539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 73 - 215
Target Start/End: Original strand, 5465857 - 5465999
Alignment:
Q  73 tcgggtacgttccatttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaatta 172  Q
    ||||||| | ||||||||||||||| |  |||||||| ||||||||||| ||||||||| |||||| |||||| | ||||| |||  |||||||||||||    
T  5465857 tcgggtatgctccatttaggctaagtttcatttacttcatttagggtttagatgtaagacatgtggcaaaaaaatatctaacggttgagattttaaatta 5465956  T
Q  173 aaaaacaaatatttgtttaatgaaaatacataataataacaaa 215  Q
    |||||||||||||| |||||| | |||||||||||||||||||    
T  5465957 aaaaacaaatatttatttaataataatacataataataacaaa 5465999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 74 - 223
Target Start/End: Complemental strand, 46993365 - 46993216
Alignment:
Q  74 cgggtacgttccatttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaa 173  Q
    |||||| | ||||||||  ||||||||||||||||  ||||| | |||| ||| ||||||| | | |||||| | ||||| | |  ||||||||||||||    
T  46993365 cgggtatgctccatttaaactaagctcaatttactccatttaagatttgaatgcaagatatttagcaaaaaaatatctaacgattgagattttaaattaa 46993266  T
Q  174 aaaacaaatatttgtttaatgaaaatacataataataacaaacaactcat 223  Q
    |||||||||||||||||||| |||||||||||||||||||||||| ||||    
T  46993265 aaaacaaatatttgtttaataaaaatacataataataacaaacaaatcat 46993216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 83 - 223
Target Start/End: Complemental strand, 24674008 - 24673869
Alignment:
Q  83 tccatttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaaaaacaaat 182  Q
    |||||||||||||| ||  ||||||| ||||||| |||||||||||||| || ||  |||||| | ||||| | |  |||||||||||||||||||||||    
T  24674008 tccatttaggctaaacttcatttactctatttagagtttggatgtaagacatatgacaaaaaaatatctaacgattgagattttaaattaaaaaacaaat 24673909  T
Q  183 atttgtttaatgaaaatacataataataacaaacaactcat 223  Q
    |||| |||||| |||||||||||||||||||||||| ||||    
T  24673908 atttatttaat-aaaatacataataataacaaacaaatcat 24673869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 73 - 211
Target Start/End: Original strand, 11789863 - 11790001
Alignment:
Q  73 tcgggtacgttccatttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaatta 172  Q
    ||||||| | ||||||||||| |||||  |||||||  ||||||||||| |||| ||||||||||| |||||| | |  || |||  |||||||||||||    
T  11789863 tcgggtatgctccatttaggcaaagcttcatttactccatttagggtttagatgcaagatatgtggcaaaaaaatattcaacggttgagattttaaatta 11789962  T
Q  173 aaaaacaaatatttgtttaatgaaaatacataataataa 211  Q
    |||||||||||||||||||||  ||||||||||||||||    
T  11789963 aaaaacaaatatttgtttaatagaaatacataataataa 11790001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 102 - 223
Target Start/End: Original strand, 9551257 - 9551378
Alignment:
Q  102 atttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaaaaacaaatatttgtttaatgaaaatac 201  Q
    |||| ||| ||||| | |||||||| |||| |||||  |||||| | ||||| |||  |||||||||||||||||||||||||||||||||| |||||||    
T  9551257 atttgcttcatttaagatttggatgcaagacatgtgtcaaaaaaatatctaacggttgagattttaaattaaaaaacaaatatttgtttaataaaaatac 9551356  T
Q  202 ataataataacaaacaactcat 223  Q
    ||||||||||||||||| ||||    
T  9551357 ataataataacaaacaaatcat 9551378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 160 - 223
Target Start/End: Original strand, 19037813 - 19037876
Alignment:
Q  160 agattttaaattaaaaaacaaatatttgtttaatgaaaatacataataataacaaacaactcat 223  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||    
T  19037813 agattttaaattaaaaaacaaatatttgtttaataaaaatacataataataacaaacaaatcat 19037876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 111 - 218
Target Start/End: Complemental strand, 26297572 - 26297465
Alignment:
Q  111 atttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaaaaacaaatatttgtttaatgaaaatacataataata 210  Q
    |||||| ||||||||| ||||||||||  |||||| | |||||  ||  |||||||||||||||||| ||||||| ||||||| ||||||||||||||||    
T  26297572 atttagagtttggatgcaagatatgtgacaaaaaaatatctaacagttgagattttaaattaaaaaataaatattcgtttaataaaaatacataataata 26297473  T
Q  211 acaaacaa 218  Q
    ||||||||    
T  26297472 acaaacaa 26297465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 111 - 223
Target Start/End: Complemental strand, 3556624 - 3556511
Alignment:
Q  111 atttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaatt-aaaaaacaaatatttgtttaatgaaaatacataataat 209  Q
    |||||||||||||||| |||| |||||| |||||| | ||||| |||  ||||||||| |  |||||||||||||||||||||| |||||| ||||||||    
T  3556624 atttagggtttggatgcaagacatgtggcaaaaaaatatctaacggttgagattttaattagaaaaaacaaatatttgtttaataaaaatatataataat 3556525  T
Q  210 aacaaacaactcat 223  Q
    ||||||||| ||||    
T  3556524 aacaaacaaatcat 3556511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 118 - 218
Target Start/End: Original strand, 1024956 - 1025055
Alignment:
Q  118 gtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaaaaacaaatatttgtttaatgaaaatacataataataacaaaca 217  Q
    ||||||||| ||||||||||| |||||| | ||||| |||  | ||||||||||||||||  |||||||||||||| |||||||||||||||||||||||    
T  1024956 gtttggatgcaagatatgtggcaaaaaa-tgtctaacggttgatattttaaattaaaaaattaatatttgtttaataaaaatacataataataacaaaca 1025054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 73 - 215
Target Start/End: Complemental strand, 23655365 - 23655222
Alignment:
Q  73 tcgggtacgttccatttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaa-agtttctaatggtcaagattttaaatt 171  Q
    ||||||| | |||||||||| ||||||  ||||| |  ||||||||||| |||| |||| |||||| ||||| |   ||||| |||  | ||||||||||    
T  23655365 tcgggtatgctccatttaggttaagcttcatttattccatttagggtttagatgcaagacatgtggcaaaaagaaaatctaacggttgaaattttaaatt 23655266  T
Q  172 aaaaaacaaatatttgtttaatgaaaatacataataataacaaa 215  Q
    ||||| |||||||||||||||| |||||||||||||||||||||    
T  23655265 aaaaatcaaatatttgtttaataaaaatacataataataacaaa 23655222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 74 - 178
Target Start/End: Original strand, 46993072 - 46993176
Alignment:
Q  74 cgggtacgttccatttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaa 173  Q
    |||||| | |||||||||| ||||||| ||||| | ||||||||||||||||| ||||||||| | |||||| | ||||| |||  |||| |||||||||    
T  46993072 cgggtatgctccatttaggttaagctccatttattctatttagggtttggatgcaagatatgtagcaaaaaaatatctaacggttgagatgttaaattaa 46993171  T
Q  174 aaaac 178  Q
    |||||    
T  46993172 aaaac 46993176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 168 - 223
Target Start/End: Original strand, 32591247 - 32591302
Alignment:
Q  168 aattaaaaaacaaatatttgtttaatgaaaatacataataataacaaacaactcat 223  Q
    |||||||||| ||||||||||||||| |||||||||||||||||||||||| ||||    
T  32591247 aattaaaaaataaatatttgtttaataaaaatacataataataacaaacaaatcat 32591302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 160 - 217
Target Start/End: Original strand, 21785799 - 21785854
Alignment:
Q  160 agattttaaattaaaaaacaaatatttgtttaatgaaaatacataataataacaaaca 217  Q
    |||||||||||||||||| |||||||||||||||  ||||||||||||||||||||||    
T  21785799 agattttaaattaaaaaataaatatttgtttaat--aaatacataataataacaaaca 21785854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 83 - 177
Target Start/End: Original strand, 50544270 - 50544364
Alignment:
Q  83 tccatttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaaaaa 177  Q
    |||||||||||||||||| ||||| | ||||||||||||||||| |||| |||||| |||||  | ||||| ||   ||||||||||||||||||    
T  50544270 tccatttaggctaagctccatttattctatttagggtttggatgcaagacatgtggcaaaaagatatctaacggatgagattttaaattaaaaaa 50544364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 162 - 223
Target Start/End: Complemental strand, 53769593 - 53769532
Alignment:
Q  162 attttaaattaaaaaacaaatatttgtttaatgaaaatacataataataacaaacaactcat 223  Q
    ||||||||| |||||| |||||||| |||||| |||||||||||||||||||||||| ||||    
T  53769593 attttaaataaaaaaataaatatttatttaataaaaatacataataataacaaacaaatcat 53769532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 96 - 180
Target Start/End: Complemental strand, 11790136 - 11790052
Alignment:
Q  96 agctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaaaaacaa 180  Q
    ||||| ||||| || |||||||||||||||| |||| |||||| |||||| | ||||| |||  |||||||||||||||||||||    
T  11790136 agctccatttatttcatttagggtttggatgcaagacatgtggcaaaaaaatatctaacggttgagattttaaattaaaaaacaa 11790052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 83 - 214
Target Start/End: Complemental strand, 17915035 - 17914906
Alignment:
Q  83 tccatttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaaaaacaaat 182  Q
    ||||||||||||||| || |||||||  |||||  ||||||||| |||| |||||| |||||| | || || |||  | |||||||||||||||  |||     
T  17915035 tccatttaggctaagttccatttactccatttaaagtttggatgcaagacatgtggcaaaaaaatatccaacggttgatattttaaattaaaaa--aaaa 17914938  T
Q  183 atttgtttaatgaaaatacataataataacaa 214  Q
    |||||||||||  ||||||||||||| |||||    
T  17914937 atttgtttaatagaaatacataataacaacaa 17914906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 74 - 145
Target Start/End: Complemental strand, 54316125 - 54316054
Alignment:
Q  74 cgggtacgttccatttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaa 145  Q
    |||||| | |||||||||||||||||| |||||||  |||||||||||||||| |||| |||||| ||||||    
T  54316125 cgggtatgctccatttaggctaagctctatttactccatttagggtttggatgcaagacatgtggcaaaaaa 54316054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 86 - 180
Target Start/End: Complemental strand, 1025190 - 1025096
Alignment:
Q  86 atttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaaaaacaa 180  Q
    |||| |||||||||  |||||||  |||||| ||||||||| |||||||||| ||||||| | | ||| |||  |||||||||||||||||||||    
T  1025190 attttggctaagcttcatttactcaatttagagtttggatgcaagatatgtgataaaaaaatatataacggttgagattttaaattaaaaaacaa 1025096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 73 - 176
Target Start/End: Original strand, 7061976 - 7062079
Alignment:
Q  73 tcgggtacgttccatttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaatta 172  Q
    ||||||| | |||||||||||||| ||| |||||||  ||||| |||||||||| |||| |||||| |||||| | | ||| |||  ||||||| |||||    
T  7061976 tcgggtatgctccatttaggctaacctctatttactccatttatggtttggatgcaagacatgtggcaaaaaaatatataacggttgagatttttaatta 7062075  T
Q  173 aaaa 176  Q
    ||||    
T  7062076 aaaa 7062079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 83 - 211
Target Start/End: Original strand, 42475890 - 42476007
Alignment:
Q  83 tccatttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaaaaacaaat 182  Q
    |||||||||||||||||  ||||||| ||||||||||||||||| |||| | |||| |||||| | ||||| | |  ||||||||||           ||    
T  42475890 tccatttaggctaagcttcatttactctatttagggtttggatgcaagacacgtggcaaaaaaatatctaacgattgagattttaaa-----------at 42475978  T
Q  183 atttgtttaatgaaaatacataataataa 211  Q
    ||||||||||| |||||||||||||||||    
T  42475979 atttgtttaataaaaatacataataataa 42476007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 83 - 144
Target Start/End: Complemental strand, 50551539 - 50551478
Alignment:
Q  83 tccatttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaa 144  Q
    |||||||||||||| ||  |||||||  ||||| |||||||||||||||||||||| |||||    
T  50551539 tccatttaggctaaactttatttactccatttaaggtttggatgtaagatatgtggcaaaaa 50551478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 177
Target Start/End: Complemental strand, 9551522 - 9551418
Alignment:
Q  73 tcgggtacgttccatttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaatta 172  Q
    ||||||| | ||||||||| |||| ||| |||||||  |||||||| ||||||| |||| || ||| |||||| | ||| | |||  |||||||||||||    
T  9551522 tcgggtatgctccatttagactaaactccatttactccatttagggcttggatggaagacatttggcaaaaaaatatctcacggttgagattttaaatta 9551423  T
Q  173 aaaaa 177  Q
    |||||    
T  9551422 aaaaa 9551418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 102 - 180
Target Start/End: Complemental strand, 32591417 - 32591338
Alignment:
Q  102 atttactttatttagggtttggatgtaagatatgtggtaaaaaagtt-tctaatggtcaagattttaaattaaaaaacaa 180  Q
    |||||||  ||||||| ||||||||||||| |||||||||||||  | | ||||| |  |||||||||||||||||||||    
T  32591417 atttactcaatttaggatttggatgtaagacatgtggtaaaaaaaatatttaatgattgagattttaaattaaaaaacaa 32591338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 97 - 138
Target Start/End: Complemental strand, 5466122 - 5466081
Alignment:
Q  97 gctcaatttactttatttagggtttggatgtaagatatgtgg 138  Q
    |||| ||||||| |||||||||||||||||||||| ||||||    
T  5466122 gctctatttactctatttagggtttggatgtaagacatgtgg 5466081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 111 - 180
Target Start/End: Original strand, 17914755 - 17914824
Alignment:
Q  111 atttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaaaaacaa 180  Q
    |||||||||||||||| |||| |||||| |||||| | || ||  ||  |||||||||||||||||||||    
T  17914755 atttagggtttggatgcaagacatgtggcaaaaaaatatccaacagttgagattttaaattaaaaaacaa 17914824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 103 - 223
Target Start/End: Complemental strand, 6408521 - 6408401
Alignment:
Q  103 tttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaaaaacaaatatttgtttaatgaaaataca 202  Q
    ||||||| |||||||||||||||| |||| |||||| |||||| | ||||| |||  ||||||||||||||||||||||||||||| |||| ||||||||    
T  6408521 tttacttcatttagggtttggatgcaagacatgtggcaaaaaaatatctaacggttgagattttaaattaaaaaacaaatatttgtctaataaaaataca 6408422  T
Q  203 taataataacaaacaactcat 223  Q
    |||||||||||||||| ||||    
T  6408421 taataataacaaacaaatcat 6408401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 83 - 216
Target Start/End: Complemental strand, 35207462 - 35207332
Alignment:
Q  83 tccatttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaaaaacaaat 182  Q
    |||||||||||||| ||| |||||||  |||||||||||||||| |||| |||||| ||||||  |   || |||| |||||||||||||||||||||||    
T  35207462 tccatttaggctaaactccatttactccatttagggtttggatgcaagacatgtggcaaaaaaaat---aacggtcgagattttaaattaaaaaacaaat 35207366  T
Q  183 atttgtttaatgaaaatacataataataacaaac 216  Q
    ||||||||||| ||||||||||||||||||||||    
T  35207365 atttgtttaataaaaatacataataataacaaac 35207332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 73 - 223
Target Start/End: Complemental strand, 19318445 - 19318294
Alignment:
Q  73 tcgggtacgttccatttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaatta 172  Q
    ||||||| | |||||||||||||||||  |||||||  ||||| ||||| |||| |||| |||||| |||||| | ||||| |||  |||||||||||||    
T  19318445 tcgggtatgctccatttaggctaagcttcatttactccatttaaggtttagatgcaagacatgtggcaaaaaaatatctaacggttgagattttaaatta 19318346  T
Q  173 a-aaaacaaatatttgtttaatgaaaatacataataataacaaacaactcat 223  Q
    | |||||||||||||||||||| || ||||||||||||||||||||| ||||    
T  19318345 agaaaacaaatatttgtttaataaacatacataataataacaaacaaatcat 19318294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 85 - 223
Target Start/End: Original strand, 26903447 - 26903582
Alignment:
Q  85 catttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaaaaacaaatat 184  Q
    |||||||||||||||  |||||||| ||||||||||||  | ||| | |||||| |||||||| || || |||  |||||||||||||||||||||||||    
T  26903447 catttaggctaagcttcatttacttcatttagggtttg--tttaa-acatgtggcaaaaaagtatcgaacggttgagattttaaattaaaaaacaaatat 26903543  T
Q  185 ttgtttaatgaaaatacataataataacaaacaactcat 223  Q
    ||||||||| |||||||||||||||||||||||| ||||    
T  26903544 ttgtttaataaaaatacataataataacaaacaaatcat 26903582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 97 - 223
Target Start/End: Complemental strand, 48006397 - 48006271
Alignment:
Q  97 gctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaaaaacaaatatttgtttaatgaa 196  Q
    |||| ||||||| |||||||| |||||||| || | |||||| |||||| | | ||| |||  |||||||||||||||||| ||||||||||||||||||    
T  48006397 gctccatttactctatttaggatttggatgcaaaacatgtggcaaaaaaatatttaacggttgagattttaaattaaaaaataaatatttgtttaatgaa 48006298  T
Q  197 aatacataataataacaaacaactcat 223  Q
    |||||||||||||||||||||| ||||    
T  48006297 aatacataataataacaaacaaatcat 48006271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 73 - 180
Target Start/End: Original strand, 35207182 - 35207289
Alignment:
Q  73 tcgggtacgttccatttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaatta 172  Q
    |||||||  ||||||||||||||||||| |||||||  |||||||||||||||| |||| |||||| |||||| | ||||| |||  |||||||||||||    
T  35207182 tcgggtatattccatttaggctaagctccatttactccatttagggtttggatgcaagacatgtggcaaaaaaatatctaacggttgagattttaaatta 35207281  T
Q  173 aaaaacaa 180  Q
    ||||||||    
T  35207282 aaaaacaa 35207289  T

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Target: chr7; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 73 - 218
Target Start/End: Original strand, 35363322 - 35363467
Alignment:
Q  73 tcgggtacgttccatttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaatta 172  Q
    ||||||| | ||||||||||||||| |  |||||||  |||||| |||| |||| || | |||||| ||||||   | ||| |||  |||||||||||||    
T  35363322 tcgggtatgctccatttaggctaagtttcatttactccatttagagtttagatgcaacacatgtggcaaaaaaaaatataacggttgagattttaaatta 35363421  T
Q  173 aaaaacaaatatttgtttaatgaaaatacataataataacaaacaa 218  Q
    ||||| || |||||||||||| ||||||||||||||||||||||||    
T  35363422 aaaaataagtatttgtttaataaaaatacataataataacaaacaa 35363467  T

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Target: chr7; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 83 - 223
Target Start/End: Complemental strand, 2834486 - 2834348
Alignment:
Q  83 tccatttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaaaaacaaat 182  Q
    ||||||||||||||| || ||||| |  |||||||||||||||  || | |||||| |||| | | | |||  ||  ||||||||||||||||||  |||    
T  2834486 tccatttaggctaagttccatttattccatttagggtttggatacaaaacatgtggcaaaataatatgtaacagttgagattttaaattaaaaaa--aat 2834389  T
Q  183 atttgtttaatgaaaatacataataataacaaacaactcat 223  Q
    ||||||||||| |||||||||||||||||||||||| ||||    
T  2834388 atttgtttaataaaaatacataataataacaaacaaatcat 2834348  T

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Target: chr7; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 73 - 188
Target Start/End: Complemental strand, 25048321 - 25048205
Alignment:
Q  73 tcgggtacgttccatttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagt-ttctaatggtcaagattttaaatt 171  Q
    ||||||| | |||||||||||||||||| |||||||| ||||||| |||||||| |||| |||||  |||||| | ||| || |||  ||||||||||||    
T  25048321 tcgggtatgctccatttaggctaagctccatttacttcatttaggatttggatgcaagacatgtgacaaaaaaatattcaaacggttgagattttaaatt 25048222  T
Q  172 aaaaaacaaatatttgt 188  Q
    |||||| ||||||||||    
T  25048221 aaaaaataaatatttgt 25048205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 168 - 223
Target Start/End: Original strand, 29474512 - 29474567
Alignment:
Q  168 aattaaaaaacaaatatttgtttaatgaaaatacataataataacaaacaactcat 223  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||| ||||    
T  29474512 aattaaaaaacaaatatttgtttaataaaaatacataataataacaaacaaatcat 29474567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 111 - 177
Target Start/End: Complemental strand, 35363577 - 35363511
Alignment:
Q  111 atttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaaaaa 177  Q
    ||||||| |||||| ||||||||||||| |||||| | |||||||||  ||||||||||||||||||    
T  35363577 atttaggatttggaggtaagatatgtggcaaaaaaatatctaatggttgagattttaaattaaaaaa 35363511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 83 - 180
Target Start/End: Original strand, 19318161 - 19318258
Alignment:
Q  83 tccatttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaaaaacaa 180  Q
    |||||||||| ||||| | |||||||  |||||| |||||||||||||| |||||  |||||| | ||||| | |  |||||||||||||||||||||    
T  19318161 tccatttaggttaagcgccatttactccatttagagtttggatgtaagacatgtgacaaaaaaatatctaacgattgagattttaaattaaaaaacaa 19318258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 83 - 180
Target Start/End: Complemental strand, 29474699 - 29474603
Alignment:
Q  83 tccatttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaaaaacaa 180  Q
    |||||||||||||| ||| ||||||| ||||||| | ||||||| |||| |||| | |||||| | ||||| |||  | |||||||||||||||||||    
T  29474699 tccatttaggctaaactccatttactctatttagagcttggatgcaagacatgtag-aaaaaaatatctaacggttgaaattttaaattaaaaaacaa 29474603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 176
Target Start/End: Complemental strand, 39983924 - 39983836
Alignment:
Q  83 tccatttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaaaa 176  Q
    ||||||||||| |||||| |||||||  |||||||||||||||| |||| |||||    ||||| |||||| |||  |||||||||||||||||    
T  39983924 tccatttaggcgaagctccatttactccatttagggtttggatgcaagacatgtg----aaaag-ttctaacggttgagattttaaattaaaaa 39983836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 180
Target Start/End: Original strand, 6408267 - 6408365
Alignment:
Q  83 tccatttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtt-tctaatggtcaagattttaaattaaaaaacaa 180  Q
    ||||||||| |||||||| |||||||| ||||||| |||| |||  |||||||||| ||||||  | | ||| |||  |||||||| ||||||||||||    
T  6408267 tccatttagtctaagctccatttacttcatttaggatttgaatggcagatatgtggcaaaaaaaatatgtaacggttgagattttatattaaaaaacaa 6408365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 137
Target Start/End: Complemental strand, 19318516 - 19318452
Alignment:
Q  73 tcgggtacgttccatttaggctaagctcaatttactttatttagggtttggatgtaagatatgtg 137  Q
    ||||||| | |||||||||||||||||| |||||||  ||||| ||||| |||| |||| |||||    
T  19318516 tcgggtatgctccatttaggctaagctccatttactccatttaaggtttagatgcaagacatgtg 19318452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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