View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5322-Insertion-1 (Length: 528)
Name: NF5322-Insertion-1
Description: NF5322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5322-Insertion-1 |
 | |
|
| [»] chr2 (2 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 171; Significance: 1e-91; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 329 - 528
Target Start/End: Complemental strand, 13716125 - 13715926
Alignment:
| Q |
329 |
caagatcaatttgaatggnnnnnnntggttgaacatccacttgctcaaaaataggaatgtggacaacatgagtaaatgctagccaagcactcagtcgtac |
428 |
Q |
| |
|
|||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13716125 |
caagatcaatttgaatggaaaaaaatggtcgaacatccacttgctcaaaaataggaatgtggacaacatgagtaaatgctagccaagcactcagtcgtac |
13716026 |
T |
|
| Q |
429 |
aagtacaagtttgccctcaactcagctgtatgagtaagatatcagccgactaagtccagaactaaaggtgatggaggacatggaaagattatacaccccg |
528 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
13716025 |
aagtacaagtttgccctcaactcagctgtatgagtaagatatcagccgactaagtccagaactaaaggtgatggaagacatggaaagattatacaccccg |
13715926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 8 - 94
Target Start/End: Complemental strand, 13716212 - 13716126
Alignment:
| Q |
8 |
ataacttctatctctcatgttcaacttataggaagtattcaactattacttttgtcacaaccaaccgacgttgggattaacctagct |
94 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13716212 |
ataacttctatctctcatgttcaacttataggaagtattcaactattacttttgtcacaaccaaccgacgttgggattaacctagct |
13716126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 217 - 303
Target Start/End: Complemental strand, 9639168 - 9639082
Alignment:
| Q |
217 |
aagagcctgcaacatagattttactaagttcaaaggctatacaatcactttcctacatatgtgacataataaaagaagcgattaaag |
303 |
Q |
| |
|
||||| || ||||||| |||| | |||| ||||| |||||||| |||||||||||||||||||||| ||||| |||| ||| |||| |
|
|
| T |
9639168 |
aagaggctccaacatatatttgtcaaagtccaaagactatacaaccactttcctacatatgtgacatgataaatgaagtgatcaaag |
9639082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University