View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5322_high_5 (Length: 218)
Name: NF5322_high_5
Description: NF5322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5322_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 144; Significance: 7e-76; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 17 - 204
Target Start/End: Complemental strand, 620385 - 620198
Alignment:
| Q |
17 |
aaaatattatgtgtatcactttgcctcttcaaacaaaatatcatgtgtatcactcttaaatcatacannnnnnnngtcttagtccatctgatattcgcat |
116 |
Q |
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| T |
620385 |
aaaatattatgtgtatcactttgcctcttcaaacaaaatatcatgtgtatcactcttaaatcatactttttttttgtcttagtccatctgatattcgcat |
620286 |
T |
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| Q |
117 |
aaaagagtctcgatgttcagagtttaacaaggagagataaataaagtctaataaacaattgttttaaacaaacccaaacttaagtttt |
204 |
Q |
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|||||||||||||| | |||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
620285 |
aaaagagtctcgatatccagagtttgacaaggagagataaataaaatctaataaacaattgttttaaacaaacccaaacttaagtttt |
620198 |
T |
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