View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5322_low_1 (Length: 375)
Name: NF5322_low_1
Description: NF5322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5322_low_1 |
 | |
|
| [»] scaffold0655 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 316; Significance: 1e-178; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 352
Target Start/End: Complemental strand, 47709846 - 47709495
Alignment:
| Q |
1 |
tataaaggactctgcaaatctatcatagaaagatgtttagaaataggaattagtttatgcttttatgtaggttgtttaggtttgtctttatggtagttgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47709846 |
tataaaggactctgcaaatctatcatagaaagatgtttagaaataggaattagtttatgcttttatgtaggttgtttaggtttgtctttatggtagttgt |
47709747 |
T |
|
| Q |
101 |
tgtttgtagttagataggggtgaataatcccctttctgcctactactagtcaaagaaacgtaacatgtagaccattgcagcctagcgcattggtcaaatt |
200 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
47709746 |
tgttggtagttagataggggtgaataatcccctttctgcctactactggtcaaagaaacgtaacatgtagaccattgcagcctagcgcattggtgaaatt |
47709647 |
T |
|
| Q |
201 |
ctgataaagcaaagctattgaagaaccatgctagttgcagtatgactgggatcctatcattttgtatgatctacattttgaattagacattttgtgatat |
300 |
Q |
| |
|
||||| |||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
47709646 |
ctgatgaagcaaagctattgaaaaaccattctagttgcagtatgactgggatcctatcattttgtatgatctacattttgaattagacattttgtgagat |
47709547 |
T |
|
| Q |
301 |
ctttcaatttttgttggattttatgcaaataatctgtttaaattgtttctaa |
352 |
Q |
| |
|
||| ||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
47709546 |
cttccaatttttgttagattttatgcaaataatctgtttaaattgtttctaa |
47709495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 352
Target Start/End: Complemental strand, 47721502 - 47721151
Alignment:
| Q |
1 |
tataaaggactctgcaaatctatcatagaaagatgtttagaaataggaattagtttatgcttttatgtaggttgtttaggtttgtctttatggtagttgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47721502 |
tataaaggactctgcaaatctatcatagaaagatgtttagaaataggaattagtttatgcttttatgtaggttgtttaggtttgtctttatggtagttgt |
47721403 |
T |
|
| Q |
101 |
tgtttgtagttagataggggtgaataatcccctttctgcctactactagtcaaagaaacgtaacatgtagaccattgcagcctagcgcattggtcaaatt |
200 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
47721402 |
tgttggtagttagataggggtgaataatcccctttctgcctactactggtcaaagaaacgtaacatgtagaccattgcagcctagcgcattggtgaaatt |
47721303 |
T |
|
| Q |
201 |
ctgataaagcaaagctattgaagaaccatgctagttgcagtatgactgggatcctatcattttgtatgatctacattttgaattagacattttgtgatat |
300 |
Q |
| |
|
||||| |||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
47721302 |
ctgatgaagcaaagctattgaaaaaccattctagttgcagtatgactgggatcctatcattttgtatgatctacattttgaattagacattttgtgagat |
47721203 |
T |
|
| Q |
301 |
ctttcaatttttgttggattttatgcaaataatctgtttaaattgtttctaa |
352 |
Q |
| |
|
||| ||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
47721202 |
cttccaatttttgttagattttatgcaaataatctgtttaaattgtttctaa |
47721151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 6 - 52
Target Start/End: Complemental strand, 33092336 - 33092290
Alignment:
| Q |
6 |
aggactctgcaaatctatcatagaaagatgtttagaaataggaatta |
52 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33092336 |
aggactctgcaaatctatcatagaaagatgtttagaaataggaatta |
33092290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0655 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0655
Description:
Target: scaffold0655; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 6 - 52
Target Start/End: Complemental strand, 2050 - 2004
Alignment:
| Q |
6 |
aggactctgcaaatctatcatagaaagatgtttagaaataggaatta |
52 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
2050 |
aggactctgcaaatctatcatagatagatgtttagaaataggaatta |
2004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 6 - 52
Target Start/End: Complemental strand, 35532258 - 35532212
Alignment:
| Q |
6 |
aggactctgcaaatctatcatagaaagatgtttagaaataggaatta |
52 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
35532258 |
aggactctgcaaatctatcatagaaagatgtttagaaacaggaatta |
35532212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 62
Target Start/End: Complemental strand, 16246121 - 16246063
Alignment:
| Q |
4 |
aaaggactctgcaaatctatcatagaaagatgtttagaaataggaattagtttatgctt |
62 |
Q |
| |
|
|||||||||||||| ||||| | || |||| ||||| |||||||||||||||||||||| |
|
|
| T |
16246121 |
aaaggactctgcaagtctattacaggaagaagtttaaaaataggaattagtttatgctt |
16246063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University