View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5322_low_2 (Length: 371)
Name: NF5322_low_2
Description: NF5322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5322_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 260; Significance: 1e-145; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 9 - 324
Target Start/End: Original strand, 4845582 - 4845897
Alignment:
| Q |
9 |
gaagaatatgtttgtgccgcgacattgttatactacattatcaaaacctggcttatagatagtgatttcgtcgatgatagctatttcaatggatggacac |
108 |
Q |
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| T |
4845582 |
gaagaaaatgtttgtgccgcgacattgttatactacattatcaaaacctggcttatagatagtgatttcgtcgatgacggctatttcaatggatggatac |
4845681 |
T |
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| Q |
109 |
tttaatgcaatgaccgccaatgttggccctcgacatatctagcaccaatgcagcaaatattcaccatttttccttttctaacctatcgacgatgttgttt |
208 |
Q |
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| T |
4845682 |
tttaatgcaatgacagccaatgttggccctcgacatatctagcaccaatgcagcaaatactcaccatttttccttttctaacctatcgacgatgttgttc |
4845781 |
T |
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| Q |
209 |
aaatgtatcagtagtgattacaattattgtgaagaatcaaaatcaaatgcagtcaatgccgcctcaatcgcgacaacattgtagtttcaacaacaacaac |
308 |
Q |
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| T |
4845782 |
aaatgtattagtagtgattataattattgtgaagaatcaaaatcaaatgcagccaatgccgcatcaatcatgacaacattgtagtttcaacaacaacaac |
4845881 |
T |
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| Q |
309 |
aaaaaccattatatca |
324 |
Q |
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| T |
4845882 |
aaaaaccattacatca |
4845897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 144 - 218
Target Start/End: Complemental strand, 4797849 - 4797775
Alignment:
| Q |
144 |
tatctagcaccaatgcagcaaatattcaccatttttccttttctaacctatcgacgatgttgtttaaatgtatca |
218 |
Q |
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| T |
4797849 |
tatccagcaccaatgcagcaaatcttcacaatttttcctttcctaacctatccacagtggtgttcaaatgtatca |
4797775 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 299 - 355
Target Start/End: Original strand, 4846338 - 4846394
Alignment:
| Q |
299 |
caacaacaacaaaaaccattatatcacagcttggattgaagtctcgggcctttattt |
355 |
Q |
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| T |
4846338 |
caacagcaacaaaaaccattatatcacggcttggatcgcagtcacgggcctttattt |
4846394 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 235
Target Start/End: Original strand, 4804147 - 4804238
Alignment:
| Q |
141 |
acatatctagcaccaatgcagcaaatattcaccatttttccttttctaacctatcgacgatgttgtttaaatgtatcagtagtgattacaattat |
235 |
Q |
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| T |
4804147 |
acatatctagtatcaatgcagcaaatcttcaccattctttctttcctaacctatccacactggtgttcaaatgtat---tagtgaatacaattat |
4804238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 151 - 221
Target Start/End: Original strand, 4815125 - 4815195
Alignment:
| Q |
151 |
caccaatgcagcaaatattcaccatttttccttttctaacctatcgacgatgttgtttaaatgtatcagta |
221 |
Q |
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| T |
4815125 |
caccgatgcagcaaatcttcaccatttttccttgcctaacctatccacagtggtgttgaagtgtatcagta |
4815195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 141 - 195
Target Start/End: Original strand, 4824630 - 4824684
Alignment:
| Q |
141 |
acatatctagcaccaatgcagcaaatattcaccatttttccttttctaacctatc |
195 |
Q |
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| T |
4824630 |
acatatccagcactaatgcaacaaatcttcaccgttttttcttttctaacctatc |
4824684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 94 - 134
Target Start/End: Original strand, 4807635 - 4807675
Alignment:
| Q |
94 |
tcaatggatggacactttaatgcaatgaccgccaatgttgg |
134 |
Q |
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| T |
4807635 |
tcaatggatggacaattaaatgcaatgaccgccattgttgg |
4807675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 93 - 178
Target Start/End: Original strand, 3665191 - 3665277
Alignment:
| Q |
93 |
ttcaatggatggacactttaatgcaatgaccgccaatgttggccctc-gacatatctagcaccaatgcagcaaatattcaccatttt |
178 |
Q |
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|||||||||||||||||| | ||||||||| |||| |||||| || | |||||||| ||||||||||||||||| ||||||||||| |
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| T |
3665191 |
ttcaatggatggacacttaagtgcaatgactgccattgttggaccaccgacatatccggcaccaatgcagcaaatcttcaccatttt |
3665277 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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