View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5322_low_4 (Length: 287)
Name: NF5322_low_4
Description: NF5322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5322_low_4 |
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| [»] scaffold0655 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 47709829 - 47710107
Alignment:
| Q |
1 |
tttgcagagtcctttatattgggtcattagtgtcttgcctaacactgcacaccagctggacgagctaaaaagtaaagccatacggaggaggatcatacta |
100 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47709829 |
tttgcagagtcctttatactgggtcattagtgtcttgcctaacaatgcacaccagctggacgagctaaaaagtaaagccatacggaggaggatcatacta |
47709928 |
T |
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| Q |
101 |
aagattttttcgccctaactgagccgttaactgatcagcagcggccatagcacaggatgctggaccaatggaaccttcatacctgtgaaattaaagataa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47709929 |
aagattttttcgccctaactgagccgttaactgatcagcagcggccatagcacaggatgctggaccaatggaaccttcatacctgtgaaattaaagataa |
47710028 |
T |
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| Q |
201 |
gtatacagtgaaaagtgagaggaaactagagagtgaagtgcatttgcagttcatgataaacatgctgaattagaattat |
279 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47710029 |
gtatacagtgaaaagtgagaggaaactagagagtgaagtgcatttgcagttcatgataaacatgctgaattagaattat |
47710107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 47721485 - 47721763
Alignment:
| Q |
1 |
tttgcagagtcctttatattgggtcattagtgtcttgcctaacactgcacaccagctggacgagctaaaaagtaaagccatacggaggaggatcatacta |
100 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47721485 |
tttgcagagtcctttatactgggtcattagtgtcttgcctaacaatgcacaccagctggacgagctaaaaagtaaagccatacggaggaggatcatacta |
47721584 |
T |
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| Q |
101 |
aagattttttcgccctaactgagccgttaactgatcagcagcggccatagcacaggatgctggaccaatggaaccttcatacctgtgaaattaaagataa |
200 |
Q |
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| T |
47721585 |
aagattttttcgccctaactgagccgttaactgatcagcagcggccatagcacaggatgctggaccaatggaaccttcatacctgtgaaattaaagataa |
47721684 |
T |
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| Q |
201 |
gtatacagtgaaaagtgagaggaaactagagagtgaagtgcatttgcagttcatgataaacatgctgaattagaattat |
279 |
Q |
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| T |
47721685 |
gtatacagtgaaaagtgagaggaaactagagagtgaagtgcatttgcagttcatgataaacatgctgaattagaattat |
47721763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 162; Significance: 2e-86; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 86 - 279
Target Start/End: Original strand, 35532305 - 35532498
Alignment:
| Q |
86 |
aggaggatcatactaaagattttttcgccctaactgagccgttaactgatcagcagcggccatagcacaggatgctggaccaatggaaccttcatacctg |
185 |
Q |
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||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| |
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| T |
35532305 |
aggaggatcatactaaagattttttcgccctaacttcccagttaactgatcagcagcagccatagcacgagatgctggaccaatggaaccttcatacctg |
35532404 |
T |
|
| Q |
186 |
tgaaattaaagataagtatacagtgaaaagtgagaggaaactagagagtgaagtgcatttgcagttcatgataaacatgctgaattagaattat |
279 |
Q |
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| T |
35532405 |
tgaaattaaagataagtatacagtgaaaagtgagaggaaactagagagtgaagtgcatttgaagttcatgataaacatgctgaattagaattat |
35532498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 35532246 - 35532303
Alignment:
| Q |
1 |
tttgcagagtcctttatattgggtcattagtgtcttgcctaacactgcacaccagctg |
58 |
Q |
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||||||||||||| | |||||||||||||||||||||||||||| || |||||||||| |
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| T |
35532246 |
tttgcagagtcctatttattgggtcattagtgtcttgcctaacagtggacaccagctg |
35532303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 151; Significance: 6e-80; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 86 - 279
Target Start/End: Original strand, 33092383 - 33092577
Alignment:
| Q |
86 |
aggaggatcatactaaagattttttcgccctaactgagccgttaactgatcagcagcggccatagcacaggatgctggaccaatggaaccttcatacctg |
185 |
Q |
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|||||||||||||||||||||||||||||||||||| | ||||||| ||||||||| |||||||||| |||| |||||||||||||| |||||||||| |
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| T |
33092383 |
aggaggatcatactaaagattttttcgccctaactgcacagttaactaatcagcagcagccatagcacgagatgttggaccaatggaactttcatacctg |
33092482 |
T |
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| Q |
186 |
tgaaattaaagataagtatacagtgaaaagtgagaggaaactagagagtg-aagtgcatttgcagttcatgataaacatgctgaattagaattat |
279 |
Q |
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| T |
33092483 |
tgaaattaaagataagtatacagtgaaaagtgagaggaaactagagagtgaaagtgcatttgcagttcatgataaacatgctgaattagaattat |
33092577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 33092324 - 33092381
Alignment:
| Q |
1 |
tttgcagagtcctttatattgggtcattagtgtcttgcctaacactgcacaccagctg |
58 |
Q |
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||||||||||||| | ||||||||||||||||||||||||||| || |||||||||| |
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| T |
33092324 |
tttgcagagtcctatttattgggtcattagtgtcttgcctaacgctagacaccagctg |
33092381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 84 - 276
Target Start/End: Complemental strand, 19934396 - 19934204
Alignment:
| Q |
84 |
ggaggaggatcatactaaagattttttcgccctaactgagccgttaactgatcagcagcggccatagcacaggatgctggaccaatggaaccttcatacc |
183 |
Q |
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|||||||||||||| ||||||||||||||| |||||| | ||||||||||||||| | |||||| ||| |||||||||||||||||||||||||||| |
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| T |
19934396 |
ggaggaggatcatattaaagattttttcgctttaactgcccagttaactgatcagcaacagccataacacgagatgctggaccaatggaaccttcatacc |
19934297 |
T |
|
| Q |
184 |
tgtgaaattaaagataagtatacagtgaaaagtgagaggaaactagagagtgaagtgcatttgcagttcatgataaacatgctgaattagaat |
276 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
19934296 |
tgtgaaataaaagataagtatacagtgaaaagtgagaggaaactagagaatgaagtgcatttgtagttcatgataaacatgctgaattagaat |
19934204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 19934453 - 19934394
Alignment:
| Q |
1 |
tttgcagagtcctttatattgggtcattagtgtcttgcctaacactgcacaccagctgga |
60 |
Q |
| |
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|||| |||||||| | |||||||||||||||||||||| |||||||| |||| ||||||| |
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| T |
19934453 |
tttgaagagtcctatttattgggtcattagtgtcttgcataacactggacactagctgga |
19934394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0655 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: scaffold0655
Description:
Target: scaffold0655; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 2038 - 2094
Alignment:
| Q |
1 |
tttgcagagtcctttatattgggtcattagtgtcttgcctaacactgcacaccagct |
57 |
Q |
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| T |
2038 |
tttgcagagtcctatttattgggtcattaatgtcttgcctaacactggacaccagct |
2094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0655; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 86 - 142
Target Start/End: Original strand, 2097 - 2153
Alignment:
| Q |
86 |
aggaggatcatactaaagattttttcgccctaactgagccgttaactgatcagcagc |
142 |
Q |
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|||||||||||||| |||||||||| |||||||||| ||||||||||||||||| |
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| T |
2097 |
aggaggatcatactgaagatttttttgccctaactgcctagttaactgatcagcagc |
2153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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