View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5323-Insertion-1 (Length: 588)
Name: NF5323-Insertion-1
Description: NF5323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5323-Insertion-1 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 408; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 7 - 588
Target Start/End: Original strand, 11824674 - 11825266
Alignment:
| Q |
7 |
atgtgtatca-ttttcaattgattcctagagtaatttgatgtcatttaactccttatgttcaataagtagtgttctaaaaagttgtaactacta------ |
99 |
Q |
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| T |
11824674 |
atgtgtatcaattttcaatagattcctaaagttatttgatgtcatttaactccttattttcaataagtagtgttagaaaaagttgtaactactataacct |
11824773 |
T |
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| Q |
100 |
-atgttgtttctctttttctatacaataggatcatccaagccttgttgaggaaaagtaggactgaataatacttcgttgtgccgccttcaatattaatat |
198 |
Q |
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| T |
11824774 |
tatgttgtttctctttttctatacaataggatcatccaagcattgttgaggaaaagtaggactgaataatacttcattgtgctaccttcaatattaatat |
11824873 |
T |
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| Q |
199 |
cgttgataggttcttgtatttttaaatgttcattgtagtgtatgtgtattgtcatatgtatcatttttcataccttg-ttttttatgccattacttaggt |
297 |
Q |
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| T |
11824874 |
cgttgatgggttcttgtatttttaaatgttcattgtagtgcatgtgtattgtcatatgtatcatttttcataccttgtttttttatgccattacttagat |
11824973 |
T |
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| Q |
298 |
atgtttgttggtactttggatgcacaatacttacttttttaataatacagttggtgtttggcctatcttcacaatattattcacaataatgcagttggca |
397 |
Q |
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| T |
11824974 |
atgtttgttggtactttggatgcacaatacttacttttttaataatgcaattggtgtttggtctatcttcacaatatcattcacaataatgccgttggta |
11825073 |
T |
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| Q |
398 |
ttggctatttaaagagagagtcgcaatatcattcacacgaagatatttatcttcatgtgaatgatttctatcttcac--atgcacgaattatgtaaatac |
495 |
Q |
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| T |
11825074 |
ttggctatttaaagagagaatcacaatatcattcacacgaagatatatatcttcatgtgaatgatatctatcttcacatatatacgaatgatgtaaatac |
11825173 |
T |
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| Q |
496 |
gacctaggtaagggttttggaaatatatagctctcaaactatatatttcaaatcatatcttcatatatcaaatctcaagccactcgatctttg |
588 |
Q |
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| T |
11825174 |
gatttcggtaagggttttggaaatttatagctctcaaactatatatttcaaattatctcttcatatatcaaatctcaagccactcaatctttg |
11825266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 44 - 329
Target Start/End: Original strand, 10353364 - 10353642
Alignment:
| Q |
44 |
atgtcatttaactccttatgttcaataagtagtgttctaaaaagttgtaactacta-------atgttgtttctctttttctatacaataggatcatcca |
136 |
Q |
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| T |
10353364 |
atgtcatgtaactccttattttcaataagtagtgttagaaaaagtttttattactataactttatgttgtttctctttttctatacaacaggatcatcca |
10353463 |
T |
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| Q |
137 |
agccttgttgaggaaaagtaggactgaataatacttcgttgtgccgccttcaatattaatatcgttgataggttcttgtatttttaaatgttcattgtag |
236 |
Q |
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| T |
10353464 |
agctttgttgaggaaa-gtgggaatgaataatacttcattatgctaccttcaagat------cgttgatgggttcttttatttttaaatgttcaatgtag |
10353556 |
T |
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| Q |
237 |
tgtatgtgtattgtcatatgtatcatttttcataccttgttttttatgccattacttaggtatgtttgttggtactttggatgcacaatactt |
329 |
Q |
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| T |
10353557 |
tatatgtgtattgtcatatgcatcagttttcataacttg-------tagcactacttagatatgtttgttggtactttggatgcacaatactt |
10353642 |
T |
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