View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5323_high_1 (Length: 416)
Name: NF5323_high_1
Description: NF5323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5323_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 30 - 393
Target Start/End: Complemental strand, 27297342 - 27296979
Alignment:
| Q |
30 |
accatgctcattccagcagattacaccttctatgtggggcccattgttttttcgggcccatactgtaaacccagaatcattttccaggtaacannnnnnn |
129 |
Q |
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| T |
27297342 |
accatgctcattccagcagattacaccttctatgtggggcccattgttttttcgggcccatactgtaaacccagaatcattttccaggtaacattttttt |
27297243 |
T |
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| Q |
130 |
nacatgagagaagggtgcagctattaacacctccatgtttactactacaccaaggtgttcgaagtcatattttggatgtgtattttttcaggtagatgga |
229 |
Q |
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|||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27297242 |
tacatgagagaagggtgcagctattaacaccaccatatttactactacaccaaggtgttcgaagtcatattttggatgtgtattttttcaggtagatgga |
27297143 |
T |
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| Q |
230 |
accattattgcaccaacaaactccaatgcttggggcagaggactattacagtggttggactttacaaaactggttggatttactattcagggaaatggca |
329 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
27297142 |
accattattgcaccaacaaactccaatgcttggggcagaggactattacagtggttggactttacaaaactggttggatttactattcaaggaaatggca |
27297043 |
T |
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| Q |
330 |
ttattgatggaagaggttcagtatggtggcaagacactaagtataatgatcctttagatgatga |
393 |
Q |
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| T |
27297042 |
tttttgatggaagaggttcagtatggtggcaagacactcagtataatgatcctttagatgatga |
27296979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 224 - 363
Target Start/End: Original strand, 14737167 - 14737306
Alignment:
| Q |
224 |
gatggaaccattattgcaccaacaaactccaatgcttggggcagaggactattacagtggttggactttacaaaactggttggatttactattcagggaa |
323 |
Q |
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||||| || |||||||| ||||||||| | ||||||||| | ||| | | |||||||| |||| || |||||||| | ||| |||| ||||| |||| |
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| T |
14737167 |
gatggtacaattattgctccaacaaacccaaatgcttggagtggagtaacactacagtggctggaattcacaaaactagaaggaattaccattcaaggaa |
14737266 |
T |
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| Q |
324 |
atggcattattgatggaagaggttcagtatggtggcaaga |
363 |
Q |
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| T |
14737267 |
atggtgtcattgatggaagaggctcagtttggtggcaaga |
14737306 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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