View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5323_high_16 (Length: 312)
Name: NF5323_high_16
Description: NF5323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5323_high_16 |
 | |
|
| [»] chr5 (2 HSPs) |
| |
|
| [»] chr4 (4 HSPs) |
| |
|
| [»] chr3 (4 HSPs) |
| |
|
| [»] chr8 (2 HSPs) |
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|
| [»] chr2 (3 HSPs) |
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| [»] chr6 (5 HSPs) |
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| [»] scaffold0074 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 292; Significance: 1e-164; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 5 - 312
Target Start/End: Complemental strand, 34355654 - 34355347
Alignment:
| Q |
5 |
catgttgaagcggcgcaagactttccttagataattcttttgagaaagccaaatattcctttcttttctgtctcggtgaatttgcatccctaaaatctta |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34355654 |
catgttgaagcggcgcaagactttccttagataattcttttgagaaagccaaatcttcctgtcttttctgtctcggtgaatttgcatccctaaaatcttg |
34355555 |
T |
|
| Q |
105 |
tttgctggtcccaagtctttcatatcgaactccctagccaactgtgccttcaattcctggacttgaactttgttggggcctaccaccaacatgtcatcca |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
34355554 |
tttgctggtcccaagtctttcatatcgaactccctagccaactgtgccttcaattcctggactcgaactttgttggggcctaccaccaacatgtcatcca |
34355455 |
T |
|
| Q |
205 |
catacaacagcaaaatgataaaatcattgccatcaaaccttttgtagtacgtacaatggtctgaactaagtctgttgtaatcgaggctaattatgaaaga |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34355454 |
catacaacagcaaaatgataaaatcattgccatcaaaccttttgtagtacgtacaatggtctgaactaagtctgttgtaatcgaggctaattatgaaaga |
34355355 |
T |
|
| Q |
305 |
atcaaatc |
312 |
Q |
| |
|
|||||||| |
|
|
| T |
34355354 |
atcaaatc |
34355347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 5 - 312
Target Start/End: Complemental strand, 41722054 - 41721747
Alignment:
| Q |
5 |
catgttgaagcggcgcaagactttccttagataattcttttgagaaagccaaatattcctttcttttctgtctcggtgaatttgcatccctaaaatctta |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41722054 |
catgttgaagcggcgcaagactttccttagataattcttttgagaaagccaaatcttcatgtcttttctgtctcggtgaatttgcatccctaaaatcttg |
41721955 |
T |
|
| Q |
105 |
tttgctggtcccaagtctttcatatcgaactccctagccaactgtgccttcaattcctggacttgaactttgttggggcctaccaccaacatgtcatcca |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |
|
|
| T |
41721954 |
tttgctggtcccaagtctttcatatcgaactccctagccaactgtgccttcaattcctggactcgatctttgttggggcctaccaccaacatgtcatcca |
41721855 |
T |
|
| Q |
205 |
catacaacagcaaaatgataaaatcattgccatcaaaccttttgtagtacgtacaatggtctgaactaagtctgttgtaatcgaggctaattatgaaaga |
304 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
41721854 |
catacaacagcaaaatgataaaatcattaccatcaaaccttttgtagtacgtacaatggtctgaactaagtctgctgtaatcgaggctaattatgaaaga |
41721755 |
T |
|
| Q |
305 |
atcaaatc |
312 |
Q |
| |
|
|||||||| |
|
|
| T |
41721754 |
atcaaatc |
41721747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 284; Significance: 1e-159; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 5 - 312
Target Start/End: Original strand, 48698494 - 48698801
Alignment:
| Q |
5 |
catgttgaagcggcgcaagactttccttagataattcttttgagaaagccaaatattcctttcttttctgtctcggtgaatttgcatccctaaaatctta |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48698494 |
catgttgaagcggcgcaagactttccttagataattcttttgagaaagccaaatcttcctgtcttttctgtctcggtgaatttgcatccctaaaatcttg |
48698593 |
T |
|
| Q |
105 |
tttgctggtcccaagtctttcatatcgaactccctagccaactgtgccttcaattcctggacttgaactttgttggggcctaccaccaacatgtcatcca |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |
|
|
| T |
48698594 |
tttgctggtcccaagtctttcatatcgaactccctagccaactgtgccttcaattcctggactcgatctttgttggggcctaccaccaacatgtcatcca |
48698693 |
T |
|
| Q |
205 |
catacaacagcaaaatgataaaatcattgccatcaaaccttttgtagtacgtacaatggtctgaactaagtctgttgtaatcgaggctaattatgaaaga |
304 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48698694 |
catacaacagcaaaatgataaaatcattaccatcaaaccttttgtagtacgtacaatggtctgaactaagtctgttgtaatcgaggctaattatgaaaga |
48698793 |
T |
|
| Q |
305 |
atcaaatc |
312 |
Q |
| |
|
|||||||| |
|
|
| T |
48698794 |
atcaaatc |
48698801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 5 - 312
Target Start/End: Original strand, 30946856 - 30947163
Alignment:
| Q |
5 |
catgttgaagcggcgcaagactttccttagataattcttttgagaaagccaaatattcctttcttttctgtctcggtgaatttgcatccctaaaatctta |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30946856 |
catgttgaagcggcgcaagactttccttagataattcttttgagaaagccaaatcttcctgtcttttctgtctcggtgaatttgcatccctaaaatcttg |
30946955 |
T |
|
| Q |
105 |
tttgctggtcccaagtctttcatatcgaactccctagccaactgtgccttcaattcctggacttgaactttgttggggcctaccaccaacatgtcatcca |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| ||||||||||||||||| |||||||||| |
|
|
| T |
30946956 |
tttgctggtcccaagtctttcatatcgaactccctagccaactgtgccttcaattcctggactcgatctttattggggcctaccaccaatatgtcatcca |
30947055 |
T |
|
| Q |
205 |
catacaacagcaaaatgataaaatcattgccatcaaaccttttgtagtacgtacaatggtctgaactaagtctgttgtaatcgaggctaattatgaaaga |
304 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30947056 |
catacaacagcaaaatgataaaatcattaccatcaaaccttttgtagtacgtacaatggtctgaactaagtctgttgtaatcgaggctaattatgaaaga |
30947155 |
T |
|
| Q |
305 |
atcaaatc |
312 |
Q |
| |
|
|||||||| |
|
|
| T |
30947156 |
atcaaatc |
30947163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 5 - 312
Target Start/End: Complemental strand, 42269547 - 42269240
Alignment:
| Q |
5 |
catgttgaagcggcgcaagactttccttagataattcttttgagaaagccaaatattcctttcttttctgtctcggtgaatttgcatccctaaaatctta |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
42269547 |
catgttgaagcggcgcaagactttccttagataattcttttgagaaagccaaatcttcctgtcttttctgtctcggtgaatttgcatccctaagatcttg |
42269448 |
T |
|
| Q |
105 |
tttgctggtcccaagtctttcatatcgaactccctagccaactgtgccttcaattcctggacttgaactttgttggggcctaccaccaacatgtcatcca |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |
|
|
| T |
42269447 |
tttgctggtcccaagtctttcatatcgaactccctagccaactgtgccttcaattcctggactcgatctttgttggggcctaccaccaacatgtcatcca |
42269348 |
T |
|
| Q |
205 |
catacaacagcaaaatgataaaatcattgccatcaaaccttttgtagtacgtacaatggtctgaactaagtctgttgtaatcgaggctaattatgaaaga |
304 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
42269347 |
catacaacagcaaaatgataaaatcattaccatcaaaccttttgtagtacgtacaatggtctgaactaagtctgctgtaatcgaggctaattatgaaaga |
42269248 |
T |
|
| Q |
305 |
atcaaatc |
312 |
Q |
| |
|
|||||||| |
|
|
| T |
42269247 |
atcaaatc |
42269240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 5 - 312
Target Start/End: Complemental strand, 2002527 - 2002220
Alignment:
| Q |
5 |
catgttgaagcggcgcaagactttccttagataattcttttgagaaagccaaatattcctttcttttctgtctcggtgaatttgcatccctaaaatctta |
104 |
Q |
| |
|
|||||||||| | ||||| ||||| | || |||||| |||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
2002527 |
catgttgaagtgccgcaaaacttttcgtaaataatttctttgagaaagccaaatattcctatcttttctatctcgatgaatttgcatccctaaaatcttg |
2002428 |
T |
|
| Q |
105 |
tttgctggtcccaagtctttcatatcgaactccctagccaactgtgccttcaattcctggacttgaactttgttggggcctaccaccaacatgtcatcca |
204 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||||||||| |||||||| ||||| | ||||||| |||||||||| |||||||||||||||||||||| |
|
|
| T |
2002427 |
tttgctggccccaagtccttcatatcgaactccctagccaattgtgcctttaattcttagacttgatctttgttgggtcctaccaccaacatgtcatcca |
2002328 |
T |
|
| Q |
205 |
catacaacagcaaaatgataaaatcattgccatcaaaccttttgtagtacgtacaatggtctgaactaagtctgttgtaatcgaggctaattatgaaaga |
304 |
Q |
| |
|
|| |||||| |||||||||||||||||| | ||||||| |||||||| ||||||||||||||| ||||||||||||| | ||||||| ||||||||| |
|
|
| T |
2002327 |
caaacaacaacaaaatgataaaatcattattaccaaacctattgtagtatgtacaatggtctgaattaagtctgttgtatccaaggctaactatgaaaga |
2002228 |
T |
|
| Q |
305 |
atcaaatc |
312 |
Q |
| |
|
|||||||| |
|
|
| T |
2002227 |
atcaaatc |
2002220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 284; Significance: 1e-159; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 5 - 312
Target Start/End: Original strand, 5819948 - 5820255
Alignment:
| Q |
5 |
catgttgaagcggcgcaagactttccttagataattcttttgagaaagccaaatattcctttcttttctgtctcggtgaatttgcatccctaaaatctta |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5819948 |
catgttgaagcggcgcaagactttccttagataattcttttgagaaagccaaatcttcctgtcttttctgtctcggtgaatttgcatccctaaaatcttg |
5820047 |
T |
|
| Q |
105 |
tttgctggtcccaagtctttcatatcgaactccctagccaactgtgccttcaattcctggacttgaactttgttggggcctaccaccaacatgtcatcca |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |
|
|
| T |
5820048 |
tttgctggtcccaagtctttcatatcgaactccctagccaactgtgccttcaattcctggactcgatctttgttggggcctaccaccaacatgtcatcca |
5820147 |
T |
|
| Q |
205 |
catacaacagcaaaatgataaaatcattgccatcaaaccttttgtagtacgtacaatggtctgaactaagtctgttgtaatcgaggctaattatgaaaga |
304 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5820148 |
catacaacagcaaaatgataaaatcattaccatcaaaccttttgtagtacgtacaatggtctgaactaagtctgttgtaatcgaggctaattatgaaaga |
5820247 |
T |
|
| Q |
305 |
atcaaatc |
312 |
Q |
| |
|
|||||||| |
|
|
| T |
5820248 |
atcaaatc |
5820255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 5 - 312
Target Start/End: Complemental strand, 42588592 - 42588285
Alignment:
| Q |
5 |
catgttgaagcggcgcaagactttccttagataattcttttgagaaagccaaatattcctttcttttctgtctcggtgaatttgcatccctaaaatctta |
104 |
Q |
| |
|
|||||||||||| |||| ||||| | || |||||| |||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
42588592 |
catgttgaagcgccgcanaacttttcgtaaataatttctttgagaaagccaaatattcctatcttttctatctcgatgaatttgcatccctaaaatcttg |
42588493 |
T |
|
| Q |
105 |
tttgctggtcccaagtctttcatatcgaactccctagccaactgtgccttcaattcctggacttgaactttgttggggcctaccaccaacatgtcatcca |
204 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||||||||| ||||| || ||||| ||||||||| |||||||||| |||||||||||||||||||||| |
|
|
| T |
42588492 |
tttgctggccccaagtccttcatatcgaactccctagccaattgtgcatttaattcttggacttgatctttgttgggtcctaccaccaacatgtcatcca |
42588393 |
T |
|
| Q |
205 |
catacaacagcaaaatgataaaatcattgccatcaaaccttttgtagtacgtacaatggtctgaactaagtctgttgtaatcgaggctaattatgaaaga |
304 |
Q |
| |
|
||||||||| |||||||||||||||||| | ||||||| |||||||| ||||||||||||||| ||||||||||||| | ||||||| ||||||||| |
|
|
| T |
42588392 |
catacaacaacaaaatgataaaatcattattaccaaacctattgtagtatgtacaatggtctgaattaagtctgttgtatccaaggctaactatgaaaga |
42588293 |
T |
|
| Q |
305 |
atcaaatc |
312 |
Q |
| |
|
|||||||| |
|
|
| T |
42588292 |
atcaaatc |
42588285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 5 - 196
Target Start/End: Complemental strand, 54544789 - 54544598
Alignment:
| Q |
5 |
catgttgaagcggcgcaagactttccttagataattcttttgagaaagccaaatattcctttcttttctgtctcggtgaatttgcatccctaaaatctta |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54544789 |
catgttgaagcggcgcaagactttccttagataattcttttgagaaagccaaatcttcctgtcttttctgtctcggtgaatttgcatccctaaaatcttg |
54544690 |
T |
|
| Q |
105 |
tttgctggtcccaagtctttcatatcgaactccctagccaactgtgccttcaattcctggacttgaactttgttggggcctaccaccaacat |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| || ||||||||||||||||||||||||| |
|
|
| T |
54544689 |
tttgctggtcccaagtctttcatatcgaactccctagccaactgtgccttcaattcttagacccgatctttgttggggcctaccaccaacat |
54544598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 43 - 144
Target Start/End: Complemental strand, 25877906 - 25877805
Alignment:
| Q |
43 |
tttgagaaagccaaatattcctttcttttctgtctcggtgaatttgcatccctaaaatcttatttgctggtcccaagtctttcatatcgaactccctagc |
142 |
Q |
| |
|
||||||||||| |||| ||||| |||||||| ||||||||||||||||||| ||||||||| ||| |||| || |||| |||||||||||||||||||| |
|
|
| T |
25877906 |
tttgagaaagcaaaatcttcctatcttttctatctcggtgaatttgcatccttaaaatcttgttttctggcccagagtccttcatatcgaactccctagc |
25877807 |
T |
|
| Q |
143 |
ca |
144 |
Q |
| |
|
|| |
|
|
| T |
25877806 |
ca |
25877805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 280; Significance: 1e-157; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 5 - 312
Target Start/End: Original strand, 9440764 - 9441071
Alignment:
| Q |
5 |
catgttgaagcggcgcaagactttccttagataattcttttgagaaagccaaatattcctttcttttctgtctcggtgaatttgcatccctaaaatctta |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9440764 |
catgttgaagcggcgcaagactttccttagataattcttttgagaaagccaaatcttcctgtcttttctgtctcggtgaatttgcatccctaaaatcttg |
9440863 |
T |
|
| Q |
105 |
tttgctggtcccaagtctttcatatcgaactccctagccaactgtgccttcaattcctggacttgaactttgttggggcctaccaccaacatgtcatcca |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |
|
|
| T |
9440864 |
tttgctggtcccaagtctttcatatcgaactccctagccaactgtgccttcaattcctggactcgatctttgttggggcctaccaccaacatgtcatcca |
9440963 |
T |
|
| Q |
205 |
catacaacagcaaaatgataaaatcattgccatcaaaccttttgtagtacgtacaatggtctgaactaagtctgttgtaatcgaggctaattatgaaaga |
304 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
9440964 |
catacaacagcaaaatgataaaatcattaccatcaaaccttttgtagtacgtacaatggtctgaactaagtctgctgtaatcgaggctaattatgaaaga |
9441063 |
T |
|
| Q |
305 |
atcaaatc |
312 |
Q |
| |
|
|||||||| |
|
|
| T |
9441064 |
atcaaatc |
9441071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 5 - 312
Target Start/End: Original strand, 24595164 - 24595471
Alignment:
| Q |
5 |
catgttgaagcggcgcaagactttccttagataattcttttgagaaagccaaatattcctttcttttctgtctcggtgaatttgcatccctaaaatctta |
104 |
Q |
| |
|
|||||||||||| ||||| ||||| | || |||||| |||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
24595164 |
catgttgaagcgccgcaaaacttttcgtaaataatttctttgagaaagccaaatattcctatcttttctatctcgatgaatttgcatccctaaaatcttg |
24595263 |
T |
|
| Q |
105 |
tttgctggtcccaagtctttcatatcgaactccctagccaactgtgccttcaattcctggacttgaactttgttggggcctaccaccaacatgtcatcca |
204 |
Q |
| |
|
|||||||| |||||||| ||||||| |||||| |||||||| |||||||| ||||| ||||||||| |||||||||| |||||||||||||||||||||| |
|
|
| T |
24595264 |
tttgctggccccaagtccttcatattgaactctctagccaattgtgcctttaattcttggacttgatctttgttgggtcctaccaccaacatgtcatcca |
24595363 |
T |
|
| Q |
205 |
catacaacagcaaaatgataaaatcattgccatcaaaccttttgtagtacgtacaatggtctgaactaagtctgttgtaatcgaggctaattatgaaaga |
304 |
Q |
| |
|
||||||||| |||||||||||||||||| | ||||||| |||||||| ||||||||||||||| ||||||||||||| | ||||||| ||||||||| |
|
|
| T |
24595364 |
catacaacaacaaaatgataaaatcattattaccaaacctattgtagtatgtacaatggtctgaattaagtctgttgtatccaaggctaactatgaaaga |
24595463 |
T |
|
| Q |
305 |
atcaaatc |
312 |
Q |
| |
|
|||||||| |
|
|
| T |
24595464 |
atcaaatc |
24595471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 280; Significance: 1e-157; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 5 - 312
Target Start/End: Complemental strand, 829123 - 828816
Alignment:
| Q |
5 |
catgttgaagcggcgcaagactttccttagataattcttttgagaaagccaaatattcctttcttttctgtctcggtgaatttgcatccctaaaatctta |
104 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
829123 |
catgttgaagcggcgcaagactttccttaaataattcttttgagaaagccaaatattcctgtcttttctgtctcggtgaatttgcatccctaaaatcttg |
829024 |
T |
|
| Q |
105 |
tttgctggtcccaagtctttcatatcgaactccctagccaactgtgccttcaattcctggacttgaactttgttggggcctaccaccaacatgtcatcca |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |
|
|
| T |
829023 |
tttgctggtcccaagtctttcatatcgaactccctagccaactgtgccttcaattcctggactcgatctttgttggggcctaccaccaacatgtcatcca |
828924 |
T |
|
| Q |
205 |
catacaacagcaaaatgataaaatcattgccatcaaaccttttgtagtacgtacaatggtctgaactaagtctgttgtaatcgaggctaattatgaaaga |
304 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
828923 |
catacaacagcaaaatgataaaatcattatcatcaaaccttttgtagtacgtacaatggtctgaactaagtctgttgtaatcgaggctaattatgaaaga |
828824 |
T |
|
| Q |
305 |
atcaaatc |
312 |
Q |
| |
|
|||||||| |
|
|
| T |
828823 |
atcaaatc |
828816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 5 - 150
Target Start/End: Complemental strand, 28714727 - 28714582
Alignment:
| Q |
5 |
catgttgaagcggcgcaagactttccttagataattcttttgagaaagccaaatattcctttcttttctgtctcggtgaatttgcatccctaaaatctta |
104 |
Q |
| |
|
|||||||||| | |||||||||||||||| | ||||||||||||||| |||||| || || |||||||| |||| |||||||| ||||||||||||||| |
|
|
| T |
28714727 |
catgttgaagtgccgcaagactttccttatacaattcttttgagaaaaccaaatctttctatcttttctatctcagtgaatttacatccctaaaatcttg |
28714628 |
T |
|
| Q |
105 |
tttgctggtcccaagtctttcatatcgaactccctagccaactgtg |
150 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
28714627 |
tttgttggtcccaagtctttcatatcgaactccctaaccaactgtg |
28714582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 18 - 311
Target Start/End: Original strand, 13841603 - 13841892
Alignment:
| Q |
18 |
cgcaagactttccttagataattcttttgagaaagccaaatattcctttcttttctgtct-cggtgaatttgcatccctaaaatcttatttgctggtccc |
116 |
Q |
| |
|
||||||||||||| |||||||| ||||||||||| |||| ||| | |||||| ||| | | |||||||| |||| ||||||||| |||||||||||| |
|
|
| T |
13841603 |
cgcaagactttccatagataatcattttgagaaaggtaaatcttcttgtctttt-tgtatacaatgaatttgtatccttaaaatcttgtttgctggtccc |
13841701 |
T |
|
| Q |
117 |
aagtctttcatatcgaactccctagccaactgtgccttcaattcctggacttgaactttgttggggcctaccaccaacatgtcatccacatacaacagca |
216 |
Q |
| |
|
||||| ||||||||| | |||||||| | || || |||||||| |||| | |||||||||| ||||||||||| ||||| |||| | |||||| || |
|
|
| T |
13841702 |
aagtc----atatcgaacacactagccaattttgtctgcaattcctcgactcaatctttgttgggtcctaccaccaatatgtcgtccatacacaacaaca |
13841797 |
T |
|
| Q |
217 |
aaatgataaaatcattgccatcaaaccttttgtagtacgtacaatggtctgaactaagtctgttgtaatcgaggctaattatgaaagaatcaaat |
311 |
Q |
| |
|
||||||||||||| || ||| ||| |||| |||||||||||||| || |||| ||||||||||||| ||||||||||| ||||||| |||| |
|
|
| T |
13841798 |
aaatgataaaatcgttatcataaaaaaatttgcagtacgtacaatggcctaaactcagtctgttgtaatgaaggctaattatcaaagaattaaat |
13841892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 276; Significance: 1e-154; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 5 - 312
Target Start/End: Original strand, 26977566 - 26977873
Alignment:
| Q |
5 |
catgttgaagcggcgcaagactttccttagataattcttttgagaaagccaaatattcctttcttttctgtctcggtgaatttgcatccctaaaatctta |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26977566 |
catgttgaagcggcgcaagactttccttagataattcttttgagaaagccaaatcttcctgtcttttctgtctcggtgaatttgcatccctaaaatcttg |
26977665 |
T |
|
| Q |
105 |
tttgctggtcccaagtctttcatatcgaactccctagccaactgtgccttcaattcctggacttgaactttgttggggcctaccaccaacatgtcatcca |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||| |
|
|
| T |
26977666 |
tttgctggtcccaagtctttcatatcgaactccctagccaactgtgccttcaattcttggacccgatctttgttggggcctaccaccaacatgtcatcca |
26977765 |
T |
|
| Q |
205 |
catacaacagcaaaatgataaaatcattgccatcaaaccttttgtagtacgtacaatggtctgaactaagtctgttgtaatcgaggctaattatgaaaga |
304 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26977766 |
catacaacagcaaaatgataaaatcattaccatcaaaccttttgtagtacgtacaatggtctgaactaagtctgttgtaatcgaggctaattatgaaaga |
26977865 |
T |
|
| Q |
305 |
atcaaatc |
312 |
Q |
| |
|
|||||||| |
|
|
| T |
26977866 |
atcaaatc |
26977873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 5 - 312
Target Start/End: Original strand, 27875382 - 27875689
Alignment:
| Q |
5 |
catgttgaagcggcgcaagactttccttagataattcttttgagaaagccaaatattcctttcttttctgtctcggtgaatttgcatccctaaaatctta |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27875382 |
catgttgaagcggcgcaagactttccttagataattcttttgagaaagccaaatcttcctgtcttttctgtctcggtgaatttgcatccctaaaatcttg |
27875481 |
T |
|
| Q |
105 |
tttgctggtcccaagtctttcatatcgaactccctagccaactgtgccttcaattcctggacttgaactttgttggggcctaccaccaacatgtcatcca |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || |||| ||||||||||||||||| |||||||||| |
|
|
| T |
27875482 |
tttgctggtcccaagtctttcatatcgaactccctagccaactgtgccttcaattcttggactcgatcttttttggggcctaccaccaatatgtcatcca |
27875581 |
T |
|
| Q |
205 |
catacaacagcaaaatgataaaatcattgccatcaaaccttttgtagtacgtacaatggtctgaactaagtctgttgtaatcgaggctaattatgaaaga |
304 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27875582 |
catacaacagcaaaatgataaaatcattaccatcaaaccttttgtagtacgttcaatggtcttaactaagtctgttgtaatcgaggctaattatgaaaga |
27875681 |
T |
|
| Q |
305 |
atcaaatc |
312 |
Q |
| |
|
|||||||| |
|
|
| T |
27875682 |
atcaaatc |
27875689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 5 - 195
Target Start/End: Original strand, 1473137 - 1473327
Alignment:
| Q |
5 |
catgttgaagcggcgcaagactttccttagataattcttttgagaaagccaaatattcctttcttttctgtctcggtgaatttgcatccctaaaatctta |
104 |
Q |
| |
|
|||||||||| | ||||| ||||| | | |||||| |||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
1473137 |
catgttgaagtgccgcaaaacttttcggaaataatttctttgagaaagccaaatattcctatcttttctatctcgatgaatttgcatccctaaaatcttg |
1473236 |
T |
|
| Q |
105 |
tttgctggtcccaagtctttcatatcgaactccctagccaactgtgccttcaattcctggacttgaactttgttggggcctaccaccaaca |
195 |
Q |
| |
|
|||||||| |||||||| |||||||| |||||||| ||||| |||||||| ||||| ||||||||| |||||||||| ||||||||||||| |
|
|
| T |
1473237 |
tttgctggacccaagtccttcatatcaaactccctggccaattgtgcctttaattcttggacttgatctttgttgggtcctaccaccaaca |
1473327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 20 - 228
Target Start/End: Complemental strand, 21965022 - 21964817
Alignment:
| Q |
20 |
caagactttccttagataattcttttgagaaagccaaatattcctttcttttctgtctcggtgaatttgcatccctaaaatcttatttgctggtcccaag |
119 |
Q |
| |
|
||||||||| |||||||| | ||||||||| || |||| ||||| |||||||||||||||||| | | |||| |||||||||| ||| | |||||||| |
|
|
| T |
21965022 |
caagacttttcttagatagtgcttttgaga--gctaaatcttcctatcttttctgtctcggtga-tgtacatctctaaaatcttgtttattagtcccaag |
21964926 |
T |
|
| Q |
120 |
tctttcatatcgaactccctagccaactgtgccttcaattcctggacttgaactttgttggggcctaccaccaacatgtcatccacatacaacagcaaaa |
219 |
Q |
| |
|
|||||||||| ||||||||||||||||| || |||||||| || ||| | ||||||||||||||||||||||||||| ||||||||||||||| ||| |
|
|
| T |
21964925 |
tctttcatattgaactccctagccaactatgtattcaattcatgaactaggtctttgttggggcctaccaccaacatgtaatccacatacaacagtaaag |
21964826 |
T |
|
| Q |
220 |
tgataaaat |
228 |
Q |
| |
|
||||||||| |
|
|
| T |
21964825 |
tgataaaat |
21964817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 209 - 309
Target Start/End: Original strand, 18148080 - 18148180
Alignment:
| Q |
209 |
caacagcaaaatgataaaatcattgccatcaaaccttttgtagtacgtacaatggtctgaactaagtctgttgtaatcgaggctaattatgaaagaatca |
308 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||||||||||||||| |||||| || ||| | ||| |||||||||||| |||||||||||||||||| |
|
|
| T |
18148080 |
caacagcaaaatgataaaatcattaccataaaaccttttgtagtatgtacaacagtgagaaattagtttgttgtaatcgaaactaattatgaaagaatca |
18148179 |
T |
|
| Q |
309 |
a |
309 |
Q |
| |
|
| |
|
|
| T |
18148180 |
a |
18148180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0074 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: scaffold0074
Description:
Target: scaffold0074; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 5 - 312
Target Start/End: Original strand, 28708 - 29015
Alignment:
| Q |
5 |
catgttgaagcggcgcaagactttccttagataattcttttgagaaagccaaatattcctttcttttctgtctcggtgaatttgcatccctaaaatctta |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28708 |
catgttgaagcggcgcaagactttccttagataattcttttgagaaagccaaatcttcctgtcttttctgtctcggtgaatttgcatccctaaaatcttg |
28807 |
T |
|
| Q |
105 |
tttgctggtcccaagtctttcatatcgaactccctagccaactgtgccttcaattcctggacttgaactttgttggggcctaccaccaacatgtcatcca |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| || |||||||||| |||||||||||||||||||||| |
|
|
| T |
28808 |
tttgctggtcccaagtctttcatatcgaactccctagccaattgtgccttcaattcccggactcgacctttgttgggtcctaccaccaacatgtcatcca |
28907 |
T |
|
| Q |
205 |
catacaacagcaaaatgataaaatcattgccatcaaaccttttgtagtacgtacaatggtctgaactaagtctgttgtaatcgaggctaattatgaaaga |
304 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
28908 |
catacaacagcaaaatgataaaatcattgccatcaaaccttttgtagtacgtacaatggtctgaactaagtctgttgtaattgaggctaattatgaaaga |
29007 |
T |
|
| Q |
305 |
atcaaatc |
312 |
Q |
| |
|
|||||||| |
|
|
| T |
29008 |
atcaaatc |
29015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 176; Significance: 8e-95; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 5 - 312
Target Start/End: Original strand, 7506249 - 7506556
Alignment:
| Q |
5 |
catgttgaagcggcgcaagactttccttagataattcttttgagaaagccaaatattcctttcttttctgtctcggtgaatttgcatccctaaaatctta |
104 |
Q |
| |
|
|||||||||||| ||||| | ||| | || |||||| |||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
7506249 |
catgttgaagcgccgcaaaatttttcgtaaataatttctttgagaaagccaaatattcctatcttttctatctcgatgaatttgcatccctaaaatcttg |
7506348 |
T |
|
| Q |
105 |
tttgctggtcccaagtctttcatatcgaactccctagccaactgtgccttcaattcctggacttgaactttgttggggcctaccaccaacatgtcatcca |
204 |
Q |
| |
|
||||||| ||||||| ||||||||||||||||||||||| | |||||| ||||| ||||||||| |||||||||| |||||||||||||||||||||| |
|
|
| T |
7506349 |
tttgctgaccccaagttcttcatatcgaactccctagccaattatgcctttaattcttggacttgatctttgttgggtcctaccaccaacatgtcatcca |
7506448 |
T |
|
| Q |
205 |
catacaacagcaaaatgataaaatcattgccatcaaaccttttgtagtacgtacaatggtctgaactaagtctgttgtaatcgaggctaattatgaaaga |
304 |
Q |
| |
|
||||||| | |||||||||||||||||| || ||||||| |||||||| ||||||||||||||| ||||||||||||| || ||||||| ||||||||| |
|
|
| T |
7506449 |
catacaataacaaaatgataaaatcattatcaccaaacctattgtagtatgtacaatggtctgaattaagtctgttgtattcaaggctaactatgaaaga |
7506548 |
T |
|
| Q |
305 |
atcaaatc |
312 |
Q |
| |
|
|||||||| |
|
|
| T |
7506549 |
atcaaatc |
7506556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 21 - 225
Target Start/End: Complemental strand, 34973162 - 34972958
Alignment:
| Q |
21 |
aagactttccttagataattcttttgagaaagccaaatattcctttcttttctgtctcggtgaatttgcatccctaaaatcttatttgctggtcccaagt |
120 |
Q |
| |
|
||||||||||||||||||||| ||| |||||||||||| ||| | |||||||||||| ||||| |||||||| |||||| || |||||| ||||||||| |
|
|
| T |
34973162 |
aagactttccttagataattcatttaagaaagccaaatcttcttgtcttttctgtcttggtgagtttgcatcgctaaaacctggtttgctagtcccaagt |
34973063 |
T |
|
| Q |
121 |
ctttcatatcgaactccctagccaactgtgccttcaattcctggacttgaactttgttggggcctaccaccaacatgtcatccacatacaacagcaaaat |
220 |
Q |
| |
|
||||||||| ||| |||||| |||| |||||||||||| | ||||| | | |||||||||||||| |||||||||||| |||| |||||| | |||||| |
|
|
| T |
34973062 |
ctttcatattgaattccctaaccaattgtgccttcaatacttggacctaatatttgttggggcctaacaccaacatgtcgtccatatacaataacaaaat |
34972963 |
T |
|
| Q |
221 |
gataa |
225 |
Q |
| |
|
|||| |
|
|
| T |
34972962 |
aataa |
34972958 |
T |
|
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