View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5323_high_2 (Length: 381)

Name: NF5323_high_2
Description: NF5323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5323_high_2
NF5323_high_2
[»] chr4 (17 HSPs)
chr4 (16-377)||(25144448-25144809)
chr4 (16-366)||(24075015-24075369)
chr4 (89-368)||(31931486-31931764)
chr4 (22-72)||(20759068-20759118)
chr4 (22-72)||(20765459-20765509)
chr4 (17-76)||(17292281-17292340)
chr4 (16-73)||(31931796-31931854)
chr4 (254-325)||(9489631-9489702)
chr4 (95-136)||(23124547-23124588)
chr4 (269-325)||(23124733-23124789)
chr4 (266-325)||(3393256-3393315)
chr4 (266-325)||(21412721-21412780)
chr4 (94-136)||(20759156-20759198)
chr4 (94-136)||(20765547-20765589)
chr4 (16-73)||(3510335-3510391)
chr4 (266-366)||(12227687-12227787)
chr4 (92-144)||(44100627-44100679)
[»] chr6 (26 HSPs)
chr6 (16-368)||(21864821-21865188)
chr6 (16-370)||(3097439-3097806)
chr6 (70-368)||(5973026-5973324)
chr6 (26-368)||(14095553-14095910)
chr6 (70-264)||(8710902-8711096)
chr6 (16-116)||(30765009-30765108)
chr6 (172-368)||(30765099-30765298)
chr6 (16-82)||(17465167-17465233)
chr6 (16-73)||(18743902-18743959)
chr6 (22-71)||(24560040-24560089)
chr6 (251-366)||(24559729-24559844)
chr6 (16-69)||(2402426-2402479)
chr6 (175-368)||(5571042-5571235)
chr6 (258-366)||(20244082-20244190)
chr6 (258-366)||(22138066-22138174)
chr6 (16-64)||(5972957-5973005)
chr6 (16-64)||(8711117-8711165)
chr6 (258-366)||(19242712-19242820)
chr6 (26-71)||(20244390-20244435)
chr6 (26-71)||(22138374-22138419)
chr6 (16-69)||(33200341-33200393)
chr6 (39-69)||(19243021-19243051)
chr6 (253-306)||(17523445-17523498)
chr6 (254-306)||(14115012-14115064)
chr6 (273-325)||(20242336-20242388)
chr6 (273-325)||(22136320-22136372)
[»] chr2 (14 HSPs)
chr2 (16-370)||(28276826-28277185)
chr2 (16-368)||(28746885-28747251)
chr2 (26-368)||(20988429-20988787)
chr2 (16-65)||(11718990-11719039)
chr2 (16-73)||(18332783-18332840)
chr2 (16-63)||(18878741-18878788)
chr2 (26-77)||(31991761-31991812)
chr2 (269-325)||(31992139-31992195)
chr2 (266-325)||(18878460-18878519)
chr2 (94-136)||(18878652-18878694)
chr2 (266-366)||(5306673-5306773)
chr2 (24-73)||(26617401-26617451)
chr2 (266-310)||(11718716-11718760)
chr2 (266-306)||(27130700-27130740)
[»] chr3 (10 HSPs)
chr3 (22-364)||(50342555-50342909)
chr3 (16-352)||(1638533-1638885)
chr3 (22-69)||(17267221-17267268)
chr3 (38-73)||(17371031-17371066)
chr3 (16-70)||(29634838-29634891)
chr3 (289-366)||(4095722-4095799)
chr3 (312-367)||(12945598-12945653)
chr3 (16-73)||(29788168-29788224)
chr3 (253-366)||(55390957-55391070)
chr3 (89-137)||(17267309-17267357)
[»] chr5 (24 HSPs)
chr5 (16-368)||(28717981-28718346)
chr5 (16-368)||(10975722-10976089)
chr5 (236-368)||(21290515-21290647)
chr5 (34-265)||(31238009-31238242)
chr5 (70-199)||(21293908-21294035)
chr5 (16-137)||(19748209-19748346)
chr5 (16-73)||(23228598-23228655)
chr5 (22-69)||(31488209-31488256)
chr5 (16-77)||(13130905-13130966)
chr5 (16-77)||(25360404-25360465)
chr5 (26-77)||(36311776-36311827)
chr5 (253-366)||(16418281-16418394)
chr5 (26-73)||(12067557-12067605)
chr5 (25-69)||(22858233-22858276)
chr5 (16-69)||(15798007-15798061)
chr5 (273-325)||(13131288-13131340)
chr5 (266-325)||(2599170-2599229)
chr5 (266-325)||(12742666-12742725)
chr5 (266-325)||(12805484-12805543)
chr5 (266-325)||(25360790-25360849)
chr5 (266-325)||(36312151-36312210)
chr5 (91-144)||(37396848-37396901)
chr5 (273-325)||(15798294-15798346)
chr5 (266-310)||(23228874-23228918)
[»] chr1 (14 HSPs)
chr1 (16-366)||(21760314-21760680)
chr1 (77-322)||(11789153-11789398)
chr1 (24-73)||(19262347-19262396)
chr1 (16-73)||(11789072-11789129)
chr1 (22-73)||(15471755-15471807)
chr1 (266-336)||(48707113-48707183)
chr1 (26-69)||(48706839-48706883)
chr1 (15-70)||(26793539-26793593)
chr1 (27-81)||(39899836-39899889)
chr1 (266-325)||(5765158-5765217)
chr1 (266-325)||(15471470-15471529)
chr1 (266-325)||(47488232-47488291)
chr1 (270-364)||(26793217-26793311)
chr1 (89-138)||(26793458-26793507)
[»] chr8 (9 HSPs)
chr8 (16-379)||(27783352-27783730)
chr8 (122-364)||(8751681-8751922)
chr8 (16-287)||(10204569-10204855)
chr8 (70-368)||(24629922-24630224)
chr8 (25-137)||(12504688-12504803)
chr8 (22-65)||(26140385-26140428)
chr8 (264-336)||(12785392-12785464)
chr8 (37-73)||(24629873-24629909)
chr8 (266-322)||(12504917-12504973)
[»] chr7 (28 HSPs)
chr7 (70-368)||(12309600-12309898)
chr7 (72-368)||(26926415-26926711)
chr7 (236-366)||(7062144-7062274)
chr7 (70-278)||(7066661-7066869)
chr7 (16-129)||(5282213-5282324)
chr7 (15-73)||(28066480-28066538)
chr7 (16-73)||(7414126-7414183)
chr7 (17-73)||(31267301-31267357)
chr7 (16-69)||(3924973-3925026)
chr7 (16-73)||(12083156-12083213)
chr7 (266-327)||(27318030-27318091)
chr7 (25-73)||(27317754-27317802)
chr7 (26-77)||(3380501-3380552)
chr7 (266-325)||(18146913-18146972)
chr7 (277-368)||(41935570-41935661)
chr7 (266-368)||(3924723-3924825)
chr7 (24-73)||(7066882-7066931)
chr7 (26-77)||(11824977-11825028)
chr7 (22-69)||(12309536-12309583)
chr7 (16-58)||(5282475-5282517)
chr7 (247-366)||(16886675-16886794)
chr7 (94-136)||(150234-150276)
chr7 (16-69)||(16886428-16886481)
chr7 (266-310)||(150048-150092)
chr7 (22-70)||(1321574-1321621)
chr7 (266-310)||(12082891-12082935)
chr7 (37-65)||(23553614-23553642)
chr7 (269-325)||(28066200-28066256)
[»] scaffold0591 (1 HSPs)
scaffold0591 (16-69)||(2842-2894)
[»] scaffold0121 (1 HSPs)
scaffold0121 (24-73)||(5574-5623)
[»] scaffold0294 (1 HSPs)
scaffold0294 (26-70)||(1251-1294)
[»] scaffold0027 (1 HSPs)
scaffold0027 (22-73)||(36894-36946)


Alignment Details
Target: chr4 (Bit Score: 318; Significance: 1e-179; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 16 - 377
Target Start/End: Complemental strand, 25144809 - 25144448
Alignment:
Q  16 acatcatcagcaaactaacaagaattaaacttaaattccaacaaaataaagacactacctaaacataatttcatggccgaatcaaattgttgagaatatc 115  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||    
T  25144809 acatcttcagcaaactaacaagaattaaacttaaattccaacaaaataaagacacaacctaaacataatttcatggccgaatcaaattgttaagaatatc 25144710  T
Q  116 tttcggcgatctcagcaacgtagcttccaactcaatcaccgtgaacatgtgttcccgataatatctggagaacatgctcttcacatagtcatcgtctgcc 215  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||||| |||| ||||||||||||| |    
T  25144709 tttcggcgatctcagcaacgtagcttccaactcaatcaccgggaacatgcgttcccgataataactggagaacatgctcctcacgtagtcatcgtctgtc 25144610  T
Q  216 agcattatcttttggcccttcaaataaccgggacatgcatactgaaggtcttccaccctccttgtatctccgaggttgagtccttgattgatttcgttta 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25144609 agcattatcttttggcccttcaaataaccgggacatgcatactgaaggtcttccaccctccttgtatctccgaggttgagtccttgattgatttcgttta 25144510  T
Q  316 gttgatccttcatatcctttagcgtgatatcgacccggaccttgaacaaatgatgatgtcca 377  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  25144509 gttgatcattcatatcctttagcgtgatatcgacccggaccttgaacaaatgatgatttcca 25144448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 16 - 366
Target Start/End: Complemental strand, 24075369 - 24075015
Alignment:
Q  16 acatcatcagcaaactaacaagaattaaacttaaattccaacaaaataaa----gacactacctaaacataatttcatggccgaatcaaattgttgagaa 111  Q
    ||||| ||||||||||||||||||||||| |||||||| |||||||||||    ||  |||||||||||||||||  || |  ||||||| |||||||||    
T  24075369 acatcttcagcaaactaacaagaattaaatttaaattcaaacaaaataaataatgattctacctaaacataattttctgacataatcaaaatgttgagaa 24075270  T
Q  112 tatctttcggcgatctcagcaacgtagcttccaactcaatcaccgtgaacatgtgttcccgataatatctggagaacatgctcttcacatagtcatcgtc 211  Q
    ||||||   ||||||||||||| |||||||| ||||||||||| | ||||||| |||||||||||  |||||||||||||||| ||||  ||||||||||    
T  24075269 tatcttcaagcgatctcagcaatgtagcttcaaactcaatcactgggaacatgcgttcccgataacgtctggagaacatgctcctcacgcagtcatcgtc 24075170  T
Q  212 tgccagcattatcttttggcccttcaaataaccgggacatgcatactgaaggtcttccaccctccttgtatctccgaggttgagtccttgattgatttcg 311  Q
    || |||||||||||||||||||| |||||||||||||| |||||| ||||||||  ||||||||||||| |||||  |||| |||||||||||||||| |    
T  24075169 tgtcagcattatcttttggccctgcaaataaccgggacgtgcatattgaaggtcccccaccctccttgtgtctccagggtttagtccttgattgattttg 24075070  T
Q  312 tttagttgatccttcatatcctttagcgtgatatcgacccggaccttgaacaaat 366  Q
    || ||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  24075069 ttcagttgatccttcagatcctttagcgtgatatcgacccggaccttgaacaaat 24075015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 89 - 368
Target Start/End: Complemental strand, 31931764 - 31931486
Alignment:
Q  89 tggccgaatcaaattgttgagaatatctttcggcgatctcagcaacgtagcttccaactcaatcaccgtgaacatgtgttcccgataatatctggagaac 188  Q
    |||| |||||||||| || ||||||||||  |||||||||||||||||| |||||| |||||||  || ||||||||||||| ||| |||| ||| || |    
T  31931764 tggcagaatcaaattcttcagaatatcttcaggcgatctcagcaacgtaacttccatctcaatcctcgggaacatgtgttcctgatgatatatgggga-c 31931666  T
Q  189 atgctcttcacatagtcatcgtctgccagcattatcttttggcccttcaaataaccgggacatgcatactgaaggtcttccaccctccttgtatctccga 288  Q
    |||||| ||||  ||||||| |||| |||||||||||||| |  || ||||||||||||||||||||||| |||||| | ||||||| |||| ||||||     
T  31931665 atgctcctcacgcagtcatcatctgtcagcattatcttttcggtctgcaaataaccgggacatgcatactaaaggtccttcaccctcattgtgtctccgg 31931566  T
Q  289 ggttgagtccttgattgatttcgtttagttgatccttcatatcctttagcgtgatatcgacccggaccttgaacaaatga 368  Q
    ||||||||||||||||||||||||| ||||||||||||| || ||||||||||| |||||||||||||||||||||||||    
T  31931565 ggttgagtccttgattgatttcgttcagttgatccttcagattctttagcgtgacatcgacccggaccttgaacaaatga 31931486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 22 - 72
Target Start/End: Original strand, 20759068 - 20759118
Alignment:
Q  22 tcagcaaactaacaagaattaaacttaaattccaacaaaataaagacacta 72  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20759068 tcagcaaactaacaagaattaaacttaaattccaacaaaataaagacacta 20759118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 22 - 72
Target Start/End: Original strand, 20765459 - 20765509
Alignment:
Q  22 tcagcaaactaacaagaattaaacttaaattccaacaaaataaagacacta 72  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20765459 tcagcaaactaacaagaattaaacttaaattccaacaaaataaagacacta 20765509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 17 - 76
Target Start/End: Complemental strand, 17292340 - 17292281
Alignment:
Q  17 catcatcagcaaactaacaagaattaaacttaaattccaacaaaataaagacactaccta 76  Q
    |||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||    
T  17292340 catcttcagcaaactaacaagaatttaatttaaattccaacaaaataaagacactaccta 17292281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 16 - 73
Target Start/End: Complemental strand, 31931854 - 31931796
Alignment:
Q  16 acatcatcagcaaactaacaagaattaaa-cttaaattccaacaaaataaagacactac 73  Q
    ||||| || |||||||||||||||||||| |||||||||| ||||||||||||||||||    
T  31931854 acatcttccgcaaactaacaagaattaaaacttaaattccgacaaaataaagacactac 31931796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 254 - 325
Target Start/End: Complemental strand, 9489702 - 9489631
Alignment:
Q  254 atactgaaggtcttccaccctccttgtatctccgaggttgagtccttgattgatttcgtttagttgatcctt 325  Q
    ||||||||||| ||||||||||||||| |||||| |||||| |||||  |||| |||  |||||||||||||    
T  9489702 atactgaaggtgttccaccctccttgtgtctccggggttgattcctttgttgaattcagttagttgatcctt 9489631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 95 - 136
Target Start/End: Original strand, 23124547 - 23124588
Alignment:
Q  95 aatcaaattgttgagaatatctttcggcgatctcagcaacgt 136  Q
    ||||||||||||||||||||||||  ||||||||||||||||    
T  23124547 aatcaaattgttgagaatatctttaagcgatctcagcaacgt 23124588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 269 - 325
Target Start/End: Original strand, 23124733 - 23124789
Alignment:
Q  269 caccctccttgtatctccgaggttgagtccttgattgatttcgtttagttgatcctt 325  Q
    |||||||||||| |||||| ||||||||||||| |||||||| |  |||||||||||    
T  23124733 caccctccttgtgtctccggggttgagtccttggttgatttcatccagttgatcctt 23124789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 266 - 325
Target Start/End: Complemental strand, 3393315 - 3393256
Alignment:
Q  266 ttccaccctccttgtatctccgaggttgagtccttgattgatttcgtttagttgatcctt 325  Q
    ||||||||||||||| |||||| |||||| || ||| |||| ||| ||||||||||||||    
T  3393315 ttccaccctccttgtgtctccggggttgactcattggttgaattcatttagttgatcctt 3393256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 266 - 325
Target Start/End: Original strand, 21412721 - 21412780
Alignment:
Q  266 ttccaccctccttgtatctccgaggttgagtccttgattgatttcgtttagttgatcctt 325  Q
    ||||||||||||||| |||||| |||||| |||||| |||| ||| || |||||||||||    
T  21412721 ttccaccctccttgtgtctccgtggttgactccttggttgaattcattcagttgatcctt 21412780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 94 - 136
Target Start/End: Original strand, 20759156 - 20759198
Alignment:
Q  94 gaatcaaattgttgagaatatctttcggcgatctcagcaacgt 136  Q
    ||||||||||||||||||||||||  |||||| ||||||||||    
T  20759156 gaatcaaattgttgagaatatcttcaggcgatatcagcaacgt 20759198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 94 - 136
Target Start/End: Original strand, 20765547 - 20765589
Alignment:
Q  94 gaatcaaattgttgagaatatctttcggcgatctcagcaacgt 136  Q
    ||||||||||||||||||||||||  |||||| ||||||||||    
T  20765547 gaatcaaattgttgagaatatcttcaggcgatatcagcaacgt 20765589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 73
Target Start/End: Original strand, 3510335 - 3510391
Alignment:
Q  16 acatcatcagcaaactaacaagaattaaacttaaattccaacaaaataaagacactac 73  Q
    ||||| ||| ||||||| || ||||||||||||| |||||||||||||| ||||||||    
T  3510335 acatcttcaacaaactaccatgaattaaacttaa-ttccaacaaaataatgacactac 3510391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 366
Target Start/End: Original strand, 12227687 - 12227787
Alignment:
Q  266 ttccaccctccttgtatctccgaggttgagtccttgattgatttcgtttagttgatccttcatatcctttagcgtgatatcgacccggaccttgaacaaa 365  Q
    ||||||||||||||||||| |  |||| |||||||| |||||||  || ||||||| ||||| | | |||| ||||| |||  |||| |||||||| |||    
T  12227687 ttccaccctccttgtatcttcacggtttagtccttggttgatttaattcagttgattcttcagaccttttaacgtgacatcatcccgaaccttgaataaa 12227786  T
Q  366 t 366  Q
    |    
T  12227787 t 12227787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 92 - 144
Target Start/End: Complemental strand, 44100679 - 44100627
Alignment:
Q  92 ccgaatcaaattgttgagaatatctttcggcgatctcagcaacgtagcttcca 144  Q
    |||||||||||| |||||||||||||  || ||||||||||| ||||| ||||    
T  44100679 ccgaatcaaattcttgagaatatcttcaggtgatctcagcaatgtagcatcca 44100627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 171; Significance: 1e-91; HSPs: 26)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 16 - 368
Target Start/End: Original strand, 21864821 - 21865188
Alignment:
Q  16 acatcatcagcaaactaacaagaattaaacttaaattccaacaaaataaaga-----ca-----------ctacctaaacataatttcatggccgaatca 99  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||     ||           |||||||||||||||||  | || ||||||    
T  21864821 acatcttcagcaaactaacaagaattaaacttaaattccaacaaaataaagaatgcacataataatgatgctacctaaacataattttctagcagaatca 21864920  T
Q  100 aattgttgagaatatctttcggcgatctcagcaacgtagcttccaactcaatcaccgtgaacatgtgttcccgataatatctggagaacatgctcttcac 199  Q
    ||||||||||||||| ||  || ||||||  ||||||||||||||||| ||| |||| |||||||||||||||||||||| |||||||||||||| ||||    
T  21864921 aattgttgagaatatattcaggtgatctcttcaacgtagcttccaactaaattaccgggaacatgtgttcccgataatatatggagaacatgctcctcac 21865020  T
Q  200 atagtcatcgtctgccagcattatcttttggcccttcaaataaccgggacatgcatactgaaggtcttccaccctccttgtatctccgaggttgagtcct 299  Q
      ||||||||||||  ||||||||||||| |  || |||||||||| |||| ||||| ||||||||||||||||||||||| |||||| |||||||||||    
T  21865021 gcagtcatcgtctgt-agcattatcttttcggtctgcaaataaccgcgacacgcatattgaaggtcttccaccctccttgtgtctccggggttgagtcct 21865119  T
Q  300 tgattgatttcgtttagttgatccttcatatcctttagcgtgatatcgacccggaccttgaacaaatga 368  Q
    |||||||||| ||| |||||||| |||||||||||||||||||||||||||| ||| ||||||||||||    
T  21865120 tgattgattttgttaagttgatctttcatatcctttagcgtgatatcgaccctgactttgaacaaatga 21865188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 16 - 370
Target Start/End: Original strand, 3097439 - 3097806
Alignment:
Q  16 acatcatcagcaaactaacaagaattaaacttaaattccaacaaaataaagaca----------------ctacctaaacataatttcatggccgaatca 99  Q
    ||||| ||||||||||||||||||||||| |||||||||||||||||||||||                 |||||||||||||||||  | || ||||||    
T  3097439 acatcttcagcaaactaacaagaattaaatttaaattccaacaaaataaagactgtacatattaatgatgctacctaaacataattttctagcagaatca 3097538  T
Q  100 aattgttgagaatatctttcggcgatctcagcaacgtagcttccaactcaatcaccgtgaacatgtgttcccgataatatctggagaacatgctcttcac 199  Q
    || |||||||||||||||  ||||||||||||||| |||||||||||| ||| |||| ||| |||||||||||||||||| |||||||||||||| ||||    
T  3097539 aactgttgagaatatcttcaggcgatctcagcaacatagcttccaacttaattaccgggaaaatgtgttcccgataatatttggagaacatgctcctcac 3097638  T
Q  200 atagtcatcgtctgccagcattatcttttggcccttcaaataaccgggacatgcatactgaaggtcttccaccctccttgtatctccgaggttgagtcct 299  Q
      |||||||||||| |||||||||||||| |  ||||||||||||||||| |||||| | |||| ||| |||||| ||||| |||||| ||||  |||||    
T  3097639 gcagtcatcgtctgtcagcattatcttttcggtcttcaaataaccgggacgtgcatattaaaggcctt-caccctacttgtgtctccggggtt--gtcct 3097735  T
Q  300 tgattgatttcgtttagttgatccttcatatcctttagcgtgatatcgacccggaccttgaacaaatgatg 370  Q
    ||||| |||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  3097736 tgattaatttcgttcagttgatccttcatatcctttagcgtgatatcgacctggaccttgaacaaatgatg 3097806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 70 - 368
Target Start/End: Original strand, 5973026 - 5973324
Alignment:
Q  70 ctacctaaacataatttcatggccgaatcaaattgttgagaatatctttcggcgatctcagcaacgtagcttccaactcaatcaccgtgaacatgtgttc 169  Q
    ||||||||||||||| | ||||  |||||||| | |||||||||||||  |||||||||||||| |||||||||| |||||||  || ||||||| ||||    
T  5973026 ctacctaaacataatcttatggtagaatcaaactcttgagaatatcttcaggcgatctcagcaatgtagcttccatctcaatcctcgggaacatgcgttc 5973125  T
Q  170 ccgataatatctggagaacatgctcttcacatagtcatcgtctgccagcattatcttttggcccttcaaataaccgggacatgcatactgaaggtcttcc 269  Q
    | |||||||| |||||||||||||| || | || ||||  |||| |||||||||||||| |  || |||| ||||||||| || |||||||||||  |||    
T  5973126 ctgataatatttggagaacatgctcctcgcgtaatcatgatctgtcagcattatcttttcggtctgcaaacaaccgggacgtgtatactgaaggttctcc 5973225  T
Q  270 accctccttgtatctccgaggttgagtccttgattgatttcgtttagttgatccttcatatcctttagcgtgatatcgacccggaccttgaacaaatga 368  Q
    ||| || || | ||| || ||||| |||||| |||||||||||| ||||||||||||| |||||||||||||| |||||| || |||||||||||||||    
T  5973226 accatcattctgtcttcggggttgtgtcctttattgatttcgttcagttgatccttcagatcctttagcgtgacatcgactcgaaccttgaacaaatga 5973324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 26 - 368
Target Start/End: Complemental strand, 14095910 - 14095553
Alignment:
Q  26 caaactaacaagaattaaacttaaattccaacaaaataaagaca----------------ctacctaaacataatttcatggccgaatcaaattgttgag 109  Q
    |||||||||||||||||||||||||||| |||||||||||||||                ||||||||||||||| |  ||||  ||||||| | |||||    
T  14095910 caaactaacaagaattaaacttaaattcaaacaaaataaagacattacataataatgatgctacctaaacataatcttgtggcataatcaaactcttgag 14095811  T
Q  110 aatatctttcggcgatctcagcaacgtagcttccaactcaatcaccgtgaacatgtgttcccgataatatctggagaacatgctcttcacatagtcatcg 209  Q
    |||||||   |||||||||||||||| |||||||| |||||||  || ||||||||| | | ||  |||| ||||||||||| || ||||| ||||||||    
T  14095810 aatatctacaggcgatctcagcaacgaagcttccatctcaatcctcgggaacatgtggtgctgacgatatatggagaacatggtcctcacacagtcatcg 14095711  T
Q  210 tctgccagcattatcttttggcccttcaaataaccgggacatgcatactgaaggtcttccaccct-ccttgtatctccgaggttgagtccttgattgatt 308  Q
    |||| |||||||||| ||| |  || |||||||| ||||||||||||| ||||||| |||||||| |||||| ||| |  ||||||||||||||| ||||    
T  14095710 tctgtcagcattatccttttggtctgcaaataactgggacatgcataccgaaggtcctccaccctcccttgtgtcttcagggttgagtccttgatcgatt 14095611  T
Q  309 tcgtttagttgatccttcatatcctttagcgtgatatcgacccggaccttgaacaaatga 368  Q
    |  | |||||||||||||  |||||||||||||| ||||||||  |||||||||||||||    
T  14095610 t--tgtagttgatccttctgatcctttagcgtgacatcgaccccaaccttgaacaaatga 14095553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 70 - 264
Target Start/End: Complemental strand, 8711096 - 8710902
Alignment:
Q  70 ctacctaaacataatttcatggccgaatcaaattgttgagaatatctttcggcgatctcagcaacgtagcttccaactcaatcaccgtgaacatgtgttc 169  Q
    ||||||||||||||| | ||||  |||||||| | |||||||||||||| ||| |||||||||| |||||||||| |||||||  || ||||||| | ||    
T  8711096 ctacctaaacataatcttatggtagaatcaaactcttgagaatatctttaggcaatctcagcaatgtagcttccatctcaatcctcgggaacatgcgctc 8710997  T
Q  170 ccgataatatctggagaacatgctcttcacatagtcatcgtctgccagcattatcttttggcccttcaaataaccgggacatgcatactgaaggt 264  Q
    | |||||||| |||||||||||||| |||| || ||||  | || |||||||||||||| |  || |||| ||||||||| || |||||||||||    
T  8710996 ctgataatatttggagaacatgctcctcacgtaatcatgatatgtcagcattatcttttcggtctgcaaacaaccgggacgtgtatactgaaggt 8710902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 16 - 116
Target Start/End: Original strand, 30765009 - 30765108
Alignment:
Q  16 acatcatcagcaaactaacaagaattaaacttaaattccaacaaaataaagacactacctaaacataatttcatggccgaatcaaattgttgagaatatc 115  Q
    ||||| |||||||||||||||||||| || |||||||||||||||||||||||| ||||||||||||||||  | || ||||||||||||||| ||||||    
T  30765009 acatcttcagcaaactaacaagaatttaatttaaattccaacaaaataaagacattacctaaacataattttct-gcagaatcaaattgttgataatatc 30765107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 172 - 368
Target Start/End: Original strand, 30765099 - 30765298
Alignment:
Q  172 gataatatctggagaacatgctcttcacatagtcatcgtctgccagcattatcttttggcccttcaaataaccgggacatgcatactgaaggtcttccac 271  Q
    |||||||||||||||||||| || ||||| | ||| |||| |||| |||||||||||||||||  ||||| | ||||  |||||| |||||  | |||||    
T  30765099 gataatatctggagaacatggtcctcacacattcaccgtccgccatcattatcttttggccctgtaaatatctgggatgtgcatattgaagaacctccac 30765198  T
Q  272 cctccttgtatctccgaggttgagtccttgattgatttcgtttagttgatccttcatatcctttagcg---tgatatcgacccggaccttgaacaaatga 368  Q
    | ||||| | |||||  |||||||| ||| |||||||||||| | ||||||||| | ||| |||||||   ||||||| ||||||| ||||||| |||||    
T  30765199 cgtccttatgtctccagggttgagttcttaattgatttcgttcaattgatccttgagatcatttagcgtgatgatatctacccggatcttgaacgaatga 30765298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 17465167 - 17465233
Alignment:
Q  16 acatcatcagcaaactaacaagaattaaacttaaattccaacaaaataaagacactacctaaacata 82  Q
    ||||| |||||||||||| ||||||| || |||||||||||||||||||||||||||||||||||||    
T  17465167 acatcttcagcaaactaataagaattgaatttaaattccaacaaaataaagacactacctaaacata 17465233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 16 - 73
Target Start/End: Original strand, 18743902 - 18743959
Alignment:
Q  16 acatcatcagcaaactaacaagaattaaacttaaattccaacaaaataaagacactac 73  Q
    ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  18743902 acatcttcagcaaactaacaagaattaaacttaaattccaagaaaataaagacactac 18743959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 22 - 71
Target Start/End: Complemental strand, 24560089 - 24560040
Alignment:
Q  22 tcagcaaactaacaagaattaaacttaaattccaacaaaataaagacact 71  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  24560089 tcagcaaactaacaagaattaaatttaaattccaacaaaataaagacact 24560040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 251 - 366
Target Start/End: Complemental strand, 24559844 - 24559729
Alignment:
Q  251 tgcatactgaaggtcttccaccctccttgtatctccgaggttgagtccttgattgatttcgtttagttgatccttcatatcctttagcgtgatatcgacc 350  Q
    |||||| |||| ||| |||||||||||||  ||| ||||||| | ||||||  ||||||||| |||||||||||| | |||||||||||||  || ||||    
T  24559844 tgcatattgaatgtcctccaccctccttgagtcttcgaggttaaatccttggctgatttcgtctagttgatcctttagatcctttagcgtggcatggacc 24559745  T
Q  351 cggaccttgaacaaat 366  Q
     | |||||||||||||    
T  24559744 tgaaccttgaacaaat 24559729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 2402479 - 2402426
Alignment:
Q  16 acatcatcagcaaactaacaagaattaaacttaaattccaacaaaataaagaca 69  Q
    ||||| |||||||||||||||||||||||||||||||||||||||  |||||||    
T  2402479 acatcttcagcaaactaacaagaattaaacttaaattccaacaaagcaaagaca 2402426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 175 - 368
Target Start/End: Complemental strand, 5571235 - 5571042
Alignment:
Q  175 aatatctggagaacatgctcttcacatagtcatcgtctgccagcattatcttttggcccttcaaataaccgggacatgcatactgaaggtcttccaccct 274  Q
    ||||| |||||||||||||| |||| |||| || ||||| ||||||||||||||    || ||||| | |  ||| |||||| ||||| || |||||||     
T  5571235 aatatatggagaacatgctcctcacgtagttattgtctgtcagcattatcttttcagtctgcaaattatcaagacgtgcatattgaagatcctccaccca 5571136  T
Q  275 ccttgtatctccgaggttg-------agtccttgattgatttcgtttagttgatccttcatatcctttagcgtgatatcgacccggaccttgaacaaatg 367  Q
    |||||| ||| ||||||||       |||||||| |||||       ||||||||||||| |||||||||||||| ||||| || |||||||||||||||    
T  5571135 ccttgtgtcttcgaggttgggggttgagtccttggttgat-------agttgatccttcagatcctttagcgtgacatcgatccagaccttgaacaaatg 5571043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 258 - 366
Target Start/End: Complemental strand, 20244190 - 20244082
Alignment:
Q  258 tgaaggtcttccaccctccttgtatctccgaggttgagtccttgattgatttcgtttagttgatccttcatatcctttagcgtgatatcgacccggacct 357  Q
    |||| |||||| ||||||||||| ||| |  ||||||||| |||||||||||| || |||||||| |||| |||||||| | ||| ||||  ||| ||||    
T  20244190 tgaacgtcttctaccctccttgtgtcttcagggttgagtcattgattgatttcattcagttgatcattcaaatcctttaacatgacatcgtgccgaacct 20244091  T
Q  358 tgaacaaat 366  Q
    |||||||||    
T  20244090 tgaacaaat 20244082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 258 - 366
Target Start/End: Complemental strand, 22138174 - 22138066
Alignment:
Q  258 tgaaggtcttccaccctccttgtatctccgaggttgagtccttgattgatttcgtttagttgatccttcatatcctttagcgtgatatcgacccggacct 357  Q
    |||| |||||| ||||||||||| ||| |  ||||||||| |||||||||||| || |||||||| |||| |||||||| | ||| ||||  ||| ||||    
T  22138174 tgaacgtcttctaccctccttgtgtcttcagggttgagtcattgattgatttcattcagttgatcattcaaatcctttaacatgacatcgtgccgaacct 22138075  T
Q  358 tgaacaaat 366  Q
    |||||||||    
T  22138074 tgaacaaat 22138066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 5972957 - 5973005
Alignment:
Q  16 acatcatcagcaaactaacaagaattaaacttaaattccaacaaaataa 64  Q
    ||||| || ||||| ||||||||||||||||||||||||||||||||||    
T  5972957 acatcttccgcaaattaacaagaattaaacttaaattccaacaaaataa 5973005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 8711165 - 8711117
Alignment:
Q  16 acatcatcagcaaactaacaagaattaaacttaaattccaacaaaataa 64  Q
    ||||| || ||||| ||||||||||||||||||||||||||||||||||    
T  8711165 acatcttccgcaaattaacaagaattaaacttaaattccaacaaaataa 8711117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 258 - 366
Target Start/End: Complemental strand, 19242820 - 19242712
Alignment:
Q  258 tgaaggtcttccaccctccttgtatctccgaggttgagtccttgattgatttcgtttagttgatccttcatatcctttagcgtgatatcgacccggacct 357  Q
    |||| |||| ||||||| ||||| ||||||  |||||||| ||| || ||||| || | ||||||||||||||| |||| ||||| |||| |||| ||||    
T  19242820 tgaacgtctgccacccttcttgtgtctccggagttgagtctttggttaatttcattcaattgatccttcatatcttttaacgtgacatcgtcccgaacct 19242721  T
Q  358 tgaacaaat 366  Q
    |||| ||||    
T  19242720 tgaagaaat 19242712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 26 - 71
Target Start/End: Complemental strand, 20244435 - 20244390
Alignment:
Q  26 caaactaacaagaattaaacttaaattccaacaaaataaagacact 71  Q
    ||||||||||| |||||||||||||||| |||||| ||||||||||    
T  20244435 caaactaacaataattaaacttaaattctaacaaattaaagacact 20244390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 26 - 71
Target Start/End: Complemental strand, 22138419 - 22138374
Alignment:
Q  26 caaactaacaagaattaaacttaaattccaacaaaataaagacact 71  Q
    ||||||||||| |||||||||||||||| |||||| ||||||||||    
T  22138419 caaactaacaataattaaacttaaattctaacaaattaaagacact 22138374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 33200393 - 33200341
Alignment:
Q  16 acatcatcagcaaactaacaagaattaaacttaaattccaacaaaataaagaca 69  Q
    ||||| |||||||||||| ||||||||| |||||| ||||||||||||||||||    
T  33200393 acatcttcagcaaactaataagaattaa-cttaaactccaacaaaataaagaca 33200341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 69
Target Start/End: Complemental strand, 19243051 - 19243021
Alignment:
Q  39 attaaacttaaattccaacaaaataaagaca 69  Q
    |||||||||||||||||||||||||||||||    
T  19243051 attaaacttaaattccaacaaaataaagaca 19243021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 306
Target Start/End: Original strand, 17523445 - 17523498
Alignment:
Q  253 catactgaaggtcttccaccctccttgtatctccgaggttgagtccttgattga 306  Q
    |||| |||| |||||||||||||||||| |||||| ||||||||| ||| ||||    
T  17523445 catattgaacgtcttccaccctccttgtgtctccggggttgagtcattggttga 17523498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 254 - 306
Target Start/End: Complemental strand, 14115064 - 14115012
Alignment:
Q  254 atactgaaggtcttccaccctccttgtatctccgaggttgagtccttgattga 306  Q
    |||||||| || || |||||||||||| ||||||||||||| |||||| ||||    
T  14115064 atactgaacgttttgcaccctccttgtgtctccgaggttgactccttggttga 14115012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 273 - 325
Target Start/End: Original strand, 20242336 - 20242388
Alignment:
Q  273 ctccttgtatctccgaggttgagtccttgattgatttcgtttagttgatcctt 325  Q
    |||||||| |||||| ||||||||||||| |||||||| |  |||||||||||    
T  20242336 ctccttgtgtctccggggttgagtccttggttgatttcatccagttgatcctt 20242388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 273 - 325
Target Start/End: Original strand, 22136320 - 22136372
Alignment:
Q  273 ctccttgtatctccgaggttgagtccttgattgatttcgtttagttgatcctt 325  Q
    |||||||| |||||| ||||||||||||| |||||||| |  |||||||||||    
T  22136320 ctccttgtgtctccggggttgagtccttggttgatttcatccagttgatcctt 22136372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 148; Significance: 5e-78; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 16 - 370
Target Start/End: Original strand, 28276826 - 28277185
Alignment:
Q  16 acatcatcagcaaactaacaagaattaaacttaaattccaacaaaataaagacac-----tacctaaacataatttcatggccgaatcaaattgttgaga 110  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||| |||      ||| |||||||||||| ||||  |||| ||||||||||||    
T  28276826 acatcttcagcaaactaacaagaattaaacttaaattccaacaaaataaatacatgttgttacttaaacataattttatggaagaatgaaattgttgaga 28276925  T
Q  111 atatctttcggcgatctcagcaacgtagcttccaactcaatcaccgtgaacatgtgttcccgataatatctggagaacatgctcttcacatagtcatcgt 210  Q
    |||||||  || ||||||||||||||| ||| || |||||| | ||  |||||  ||||| |||| ||||| |||||||| ||| |||  || || ||||    
T  28276926 atatcttcaggagatctcagcaacgtaactttcatctcaattatcggaaacatacgttcctgatagtatctagagaacatactcctcaggtaatcctcgt 28277025  T
Q  211 ctgccagcattatcttttggcccttcaaataaccgggacatgcatactgaaggtcttccaccctccttgtatctccgaggttgagtccttgattgatttc 310  Q
    ||| |||||||||||||| |   | ||||||| |||||||||||||||||||||| ||| |||||||||| |||||| | ||||||| |||||||||||     
T  28277026 ctgtcagcattatcttttcggtttgcaaataaacgggacatgcatactgaaggtcctcctccctccttgtgtctccgggattgagtctttgattgatttt 28277125  T
Q  311 gtttagttgatccttcatatcctttagcgtgatatcgacccggaccttgaacaaatgatg 370  Q
    ||| ||||||||||||| |||||||||||||||||| ||| |||| ||||||||||||||    
T  28277126 gttcagttgatccttcagatcctttagcgtgatatcaacctggactttgaacaaatgatg 28277185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 16 - 368
Target Start/End: Original strand, 28746885 - 28747251
Alignment:
Q  16 acatcatcagcaaactaacaagaattaaa-cttaaattccaacaaaataaagacac----------------tacctaaacataatttcatggccgaatc 98  Q
    ||||| ||||||||||||||||||||||| |||||| |||||||||||||||||||                |||| |||||||||||  |||| |||||    
T  28746885 acatcttcagcaaactaacaagaattaaaacttaaaatccaacaaaataaagacaccacataataatgatgctaccgaaacataattttctggcagaatc 28746984  T
Q  99 aaattgttgagaatatctttcggcgatctcagcaacgtagcttccaactcaatcaccgtgaacatgtgttcccgataatatctggagaacatgctcttca 198  Q
    ||| |||||||||||| ||  ||||||||||||||||||||||||| |||||| ||   |||||||  |||| ||||||||||||||||||||||| |||    
T  28746985 aaactgttgagaatattttcaggcgatctcagcaacgtagcttccatctcaattactaggaacatgcattcctgataatatctggagaacatgctcctca 28747084  T
Q  199 catagtcatcgtctgccagcattatcttttggcccttcaaataaccgggacatgcatactgaaggtcttccaccctccttgtatctccgaggttgagtcc 298  Q
       ||||||| |||  ||||||||||||||    || |||||||  ||||| ||||||||||||||| |||||||||||||| ||||||||||||||| |    
T  28747085 agcagtcatcatctttcagcattatcttttcagtctgcaaataattgggacgtgcatactgaaggtcatccaccctccttgtgtctccgaggttgagttc 28747184  T
Q  299 ttgattgatttcgtttagttgatccttcatatcctttagcgtgatatcgacccggaccttgaacaaatga 368  Q
    |||||||||||  || |||||||||||| ||||||||||    |||||||||||||||||||||||||||    
T  28747185 ttgattgattttattcagttgatccttcgtatcctttag---tatatcgacccggaccttgaacaaatga 28747251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 26 - 368
Target Start/End: Complemental strand, 20988787 - 20988429
Alignment:
Q  26 caaactaacaagaattaaacttaaattccaacaaaataaagaca----------------ctacctaaacataatttcatggccgaatcaaattgttgag 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||                |||||||||||||||||  ||||  |||| || | |||||    
T  20988787 caaactaacaagaattaaacttaaattccaacaaaataaagacattacataataatgatgctacctaaacataatttagtggcataatcgaactcttgag 20988688  T
Q  110 aatatctttcggcgatctcagcaacgtagcttccaactcaatcaccgtgaacatgtgttcccgataatatctggagaacatgctcttcacatagtcatcg 209  Q
    ||||||||  | ||||||||||||| || |||||| | ||||   || |||||||   | | ||  || | || ||||||| ||| ||||| ||||||||    
T  20988687 aatatcttcagacgatctcagcaacataacttccatcccaatactcgggaacatgcagtgctgacgatgtatgcagaacattctcctcacacagtcatcg 20988588  T
Q  210 tctgccagcattatcttttggcccttcaaataaccgggacatgcatactgaaggtcttccaccctccttgtatctccgaggttgagtccttgattgattt 309  Q
    ||||  || |||||||||| |  || ||||||| |||||| |||||||| |||||| || ||||||||||| ||| || |||  ||||||||||||||||    
T  20988587 tctgttagaattatcttttcgatctgcaaataatcgggacgtgcatactaaaggtcatctaccctccttgtgtcttcggggtgtagtccttgattgattt 20988488  T
Q  310 cgtttagttgatccttcatatcctttagcgtgatatcgacccggaccttgaacaaatga 368  Q
    | || ||||||||||| | ||||||| |||||| ||||||||| |||| ||||||||||    
T  20988487 cattcagttgatcctttagatcctttggcgtgacatcgacccgaacctagaacaaatga 20988429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 11719039 - 11718990
Alignment:
Q  16 acatcatcagcaaactaacaagaattaaacttaaattccaacaaaataaa 65  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  11719039 acatcttcagcaaactaacaagaattaaacttaaattccaacaaaataaa 11718990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 16 - 73
Target Start/End: Complemental strand, 18332840 - 18332783
Alignment:
Q  16 acatcatcagcaaactaacaagaattaaacttaaattccaacaaaataaagacactac 73  Q
    ||||| || ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  18332840 acatcttccgcaaactaataagaattaaacttaaattccaacaaaataaagacactac 18332783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 63
Target Start/End: Complemental strand, 18878788 - 18878741
Alignment:
Q  16 acatcatcagcaaactaacaagaattaaacttaaattccaacaaaata 63  Q
    ||||| ||||||||||||||||||||||||||||||| ||||||||||    
T  18878788 acatcttcagcaaactaacaagaattaaacttaaatttcaacaaaata 18878741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 26 - 77
Target Start/End: Original strand, 31991761 - 31991812
Alignment:
Q  26 caaactaacaagaattaaacttaaattccaacaaaataaagacactacctaa 77  Q
    ||||| |||||||||| || ||||||||||||||||||||||||||||||||    
T  31991761 caaaccaacaagaatttaatttaaattccaacaaaataaagacactacctaa 31991812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 269 - 325
Target Start/End: Original strand, 31992139 - 31992195
Alignment:
Q  269 caccctccttgtatctccgaggttgagtccttgattgatttcgtttagttgatcctt 325  Q
    |||||||||||| |||||| ||||||||||||| |||||||| | ||||||||||||    
T  31992139 caccctccttgtgtctccggggttgagtccttggttgatttcatctagttgatcctt 31992195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 266 - 325
Target Start/End: Complemental strand, 18878519 - 18878460
Alignment:
Q  266 ttccaccctccttgtatctccgaggttgagtccttgattgatttcgtttagttgatcctt 325  Q
    |||| |||||||||| |||||| ||||||||||||| |||||||| | ||||||||||||    
T  18878519 ttcccccctccttgtgtctccggggttgagtccttggttgatttcatctagttgatcctt 18878460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 94 - 136
Target Start/End: Complemental strand, 18878694 - 18878652
Alignment:
Q  94 gaatcaaattgttgagaatatctttcggcgatctcagcaacgt 136  Q
    ||||||||||||||||||||||||  |||||||||||||||||    
T  18878694 gaatcaaattgttgagaatatcttcaggcgatctcagcaacgt 18878652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 266 - 366
Target Start/End: Original strand, 5306673 - 5306773
Alignment:
Q  266 ttccaccctccttgtatctccgaggttgagtccttgattgatttcgtttagttgatccttcatatcctttagcgtgatatcgacccggaccttgaacaaa 365  Q
    ||||||||| ||||| ||| || | ||||||| ||| |||||||| |  ||||||||||| |  ||||||| ||||| |||| |||| ||||||||||||    
T  5306673 ttccacccttcttgtgtcttcgggattgagtcgttggttgatttcatcaagttgatccttaagttcctttaacgtgacatcgtcccgaaccttgaacaaa 5306772  T
Q  366 t 366  Q
    |    
T  5306773 t 5306773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 73
Target Start/End: Original strand, 26617401 - 26617451
Alignment:
Q  24 agcaaactaacaagaattaaa-cttaaattccaacaaaataaagacactac 73  Q
    ||||||| |||||||| |||| |||||||| ||||||||||||||||||||    
T  26617401 agcaaacaaacaagaaataaaacttaaattgcaacaaaataaagacactac 26617451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 310
Target Start/End: Complemental strand, 11718760 - 11718716
Alignment:
Q  266 ttccaccctccttgtatctccgaggttgagtccttgattgatttc 310  Q
    ||||||||||||||| |||||| |||||||||| || ||||||||    
T  11718760 ttccaccctccttgtgtctccggggttgagtccatggttgatttc 11718716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 306
Target Start/End: Original strand, 27130700 - 27130740
Alignment:
Q  266 ttccaccctccttgtatctccgaggttgagtccttgattga 306  Q
    ||||||||||||||| ||||||||||||| |||||| ||||    
T  27130700 ttccaccctccttgtgtctccgaggttgactccttggttga 27130740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 134; Significance: 1e-69; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 22 - 364
Target Start/End: Original strand, 50342555 - 50342909
Alignment:
Q  22 tcagcaaactaacaagaattaaacttaaattccaacaaaataaagacactac------------ctaaacataatttcatggccgaatcaaattgttgag 109  Q
    ||||||||||||||||||||||| |||| ||||||||||||||||||| |||            ||||||||||||| |||||  |||||||  ||| |     
T  50342555 tcagcaaactaacaagaattaaaattaatttccaacaaaataaagacaatacatatgatgatacctaaacataattttatggcataatcaaaccgttcat 50342654  T
Q  110 aatatctttcggcgatctcagcaacgtagcttccaactcaatcaccgtgaacatgtgttcccgataatatctggagaacatgctcttcacatagtcatcg 209  Q
    ||||||||  |||||||| ||||||||||||||||||||||| |||| |||||||  ||||||||||| ||||||||||||| || ||||  | |||| |    
T  50342655 aatatcttcaggcgatcttagcaacgtagcttccaactcaattaccgggaacatgcattcccgataatgtctggagaacatggtcctcacgcaatcattg 50342754  T
Q  210 tctgccagcattatcttttggcccttcaaataaccgggacatgcatactgaaggtcttccaccctccttgtatctccgaggttgagtccttgattgattt 309  Q
    || |  ||||||||||||||| | | |||||| | ||||| |||||||||| |||| ||||||||||| || |||| | |||||||| ||||||||||||    
T  50342755 tccgttagcattatcttttggtcttgcaaatatctgggacgtgcatactgatggtcatccaccctcctcgtgtctctggggttgagttcttgattgattt 50342854  T
Q  310 cgtttagttgatccttcatatcctttagcgtgatatcgacccggaccttgaacaa 364  Q
    | || ||||||||||| | ||||||||||||||||| ||||||||||||||||||    
T  50342855 cattcagttgatccttgagatcctttagcgtgatatagacccggaccttgaacaa 50342909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 16 - 352
Target Start/End: Original strand, 1638533 - 1638885
Alignment:
Q  16 acatcatcagcaaactaacaagaattaaacttaaattccaacaaaataaagacactac----------------ctaaacataatttcatggccgaatca 99  Q
    ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||                ||||||||||||| ||||| ||| ||    
T  1638533 acatcttcagcaaaataacaagaattaaacttaaattccaacaaaataaagacactacgtaataataatgctacctaaacataattttatggcagaaaca 1638632  T
Q  100 aattgttgagaatatctttcggcgatctcagcaacgtagcttccaactcaatcaccgtgaacatgtgttcccgataatatctggagaacatgctcttcac 199  Q
    || | || |||||||||   || ||||| ||||| ||| |||||| |||||||  || ||||||| ||||| |||||||||||||||||||| || ||||    
T  1638633 aactcttaagaatatctccaggtgatctgagcaatgtatcttccatctcaatcctcgggaacatgcgttcctgataatatctggagaacatgttcctcac 1638732  T
Q  200 atagtcatcgtctgccagcattatcttttggcccttcaaataaccgggacatgcatactgaaggtcttccaccctccttgtatctccgaggttgagtcct 299  Q
      | |||||||||  || | ||||||||| |  || |||||||||||| | ||||||||||||||| || | | ||||| | |||||||| |||||||||    
T  1638733 gcattcatcgtctatcatcgttatcttttcggtctacaaataaccggggcgtgcatactgaaggtcctctagcgtccttatgtctccgagattgagtcct 1638832  T
Q  300 tgattgatttcgtttagttgatccttcatatcctttagcgtgatatcgacccg 352  Q
      |||||||||||| | |||||| |||  ||| ||| |||||  |||||||||    
T  1638833 ctattgatttcgttcaattgatcattccgatcttttggcgtggcatcgacccg 1638885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 22 - 69
Target Start/End: Original strand, 17267221 - 17267268
Alignment:
Q  22 tcagcaaactaacaagaattaaacttaaattccaacaaaataaagaca 69  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  17267221 tcagcaaactaacaagaattaaacttaaattacaacaaaataaagaca 17267268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 38 - 73
Target Start/End: Complemental strand, 17371066 - 17371031
Alignment:
Q  38 aattaaacttaaattccaacaaaataaagacactac 73  Q
    ||||||||||||||||||||||||||||||||||||    
T  17371066 aattaaacttaaattccaacaaaataaagacactac 17371031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 70
Target Start/End: Original strand, 29634838 - 29634891
Alignment:
Q  16 acatcatcagcaaactaacaagaattaaacttaaattccaacaaaataaagacac 70  Q
    ||||| ||||||||||||||||||||||||| ||||| ||||||||||| |||||    
T  29634838 acatcttcagcaaactaacaagaattaaactaaaatt-caacaaaataaggacac 29634891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 289 - 366
Target Start/End: Complemental strand, 4095799 - 4095722
Alignment:
Q  289 ggttgagtccttgattgatttcgtttagttgatccttcatatcctttagcgtgatatcgacccggaccttgaacaaat 366  Q
    ||||||||||||  |||||||| || |||||||| |||| ||| |||| ||||| |||| |||| |||||||||||||    
T  4095799 ggttgagtcctttgttgatttcattcagttgatcattcagatcttttaacgtgacatcgtcccgaaccttgaacaaat 4095722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 312 - 367
Target Start/End: Complemental strand, 12945653 - 12945598
Alignment:
Q  312 tttagttgatccttcatatcctttagcgtgatatcgacccggaccttgaacaaatg 367  Q
    |||||||| ||||||| ||| |||| |||||||||||| ||||||||||| |||||    
T  12945653 tttagttgttccttcagatcatttaacgtgatatcgactcggaccttgaataaatg 12945598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 73
Target Start/End: Original strand, 29788168 - 29788224
Alignment:
Q  16 acatcatcagcaaactaacaagaattaaacttaaattccaacaaaataaagacactac 73  Q
    ||||| ||||||||||| || ||||||||| |||| || |||||||||||||||||||    
T  29788168 acatcttcagcaaactaccatgaattaaac-taaaatcaaacaaaataaagacactac 29788224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 366
Target Start/End: Original strand, 55390957 - 55391070
Alignment:
Q  253 catactgaaggtcttccaccctccttgtatctccgaggttgagtccttgattgatttcgtttagttgatccttcatatcctttagcgtgatatcgacccg 352  Q
    ||||||||| |||||||| ||||||||| |||| |  |||||||| ||| ||| |||| || |||||||| || | ||| |||| ||||| |||| ||      
T  55390957 catactgaacgtcttccatcctccttgtgtctctggagttgagtcattggttgctttcattcagttgatcatttagatcttttaacgtgacatcgtccta 55391056  T
Q  353 gaccttgaacaaat 366  Q
     |||||||||||||    
T  55391057 aaccttgaacaaat 55391070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 89 - 137
Target Start/End: Original strand, 17267309 - 17267357
Alignment:
Q  89 tggccgaatcaaattgttgagaatatctttcggcgatctcagcaacgta 137  Q
    |||| |||||||| | |||||||||||||| ||| ||||||||||||||    
T  17267309 tggcagaatcaaactcttgagaatatctttaggcaatctcagcaacgta 17267357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 127; Significance: 2e-65; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 16 - 368
Target Start/End: Complemental strand, 28718346 - 28717981
Alignment:
Q  16 acatcatcagcaaactaacaagaattaaa-cttaaattccaacaaaataaagacactac----------------ctaaacataatttcatggccgaatc 98  Q
    ||||| ||||||||||||||||||||||| ||||||||||||||||||||| |||||||                |||||||||||||  ||||  ||||    
T  28718346 acatcttcagcaaactaacaagaattaaaacttaaattccaacaaaataaaaacactacataataatgatgctacctaaacataattttctggcataatc 28718247  T
Q  99 aaattgttgagaatatctttcggcgatctcagcaacgtagcttccaactcaatcaccgt---gaacatgtgttcccgataatatctggagaacatgctct 195  Q
    ||| |||||||||||||||  ||||||||||   | |||||||||| |||||||  |||   || |||| ||||| |||||||| ||||||||||||||     
T  28718246 aaactgttgagaatatcttcaggcgatctca---atgtagcttccatctcaatcctcgtaatgaccatgcgttcctgataatatttggagaacatgctcc 28718150  T
Q  196 tcacatagtcatcgtctgccagcattatcttttggcccttcaaataaccgggacatgcatactgaaggtcttccaccctccttgtatctccgaggttgag 295  Q
    |||| |||||||||| || |||||||||||||| |  || |||||||| ||||| ||||||||||||||| |||||||||||||| ||| || |||||||    
T  28718149 tcacgtagtcatcgtttgtcagcattatcttttcggtctgcaaataacagggacgtgcatactgaaggtcctccaccctccttgtctcttcggggttgag 28718050  T
Q  296 tccttgattgatttcgtttagttgatccttcatatcctttagcgtgatatcgacccggaccttgaacaaatga 368  Q
    ||||| |||||||| ||    ||||||||||| |||||||||||||| |||||||||||||||||||||||||    
T  28718049 tccttaattgattttgt----ttgatccttcagatcctttagcgtgacatcgacccggaccttgaacaaatga 28717981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 16 - 368
Target Start/End: Complemental strand, 10976089 - 10975722
Alignment:
Q  16 acatcatcagcaaactaacaagaattaaacttaaattccaacaaaataaagacactacctaa----------------acataatttcatggccgaatca 99  Q
    ||||| ||||||||||  || ||||||||||||||||||||||||||||||||||||| |||                ||||||| |  |||| ||||||    
T  10976089 acatcttcagcaaactttcatgaattaaacttaaattccaacaaaataaagacactacataataatgatgttacataaacataatcttgtggcagaatca 10975990  T
Q  100 aattgttgagaatatctttcggcgatctcagcaacgtagcttccaactcaatcaccgtgaacatgtgttcccgataatatctggagaacatgctcttcac 199  Q
    || | |||||||||| ||  | ||||||||||||| ||||||||| |||||||  || ||||||| | | | ||  ||||   |||||||||||| ||||    
T  10975989 aactcttgagaatatattcagacgatctcagcaacatagcttccatctcaatcctcgggaacatgcggtgctgacgatatacagagaacatgctcctcac 10975890  T
Q  200 atagtcatcgtctgccagcattatcttttggcccttcaaataaccgggacatgcatactgaaggtcttccaccctccttgtatctccgaggttgagtcct 299  Q
    | ||| |||||||| |||||||||||||| |   |  |||||||||| ||||||||  |||||||| ||||||||| |||| ||| |||||||||| |||    
T  10975889 acagttatcgtctgtcagcattatcttttcgaa-tgaaaataaccggtacatgcatgttgaaggtcatccaccctcattgtgtcttcgaggttgaggcct 10975791  T
Q  300 tgattgatttcgtttagttgatccttcatatcctttagcgtgatatcgacccggaccttgaacaaatga 368  Q
    ||||||||||| || |||||||| |||| |||| ||||||||| |||||||||||||||||||||||||    
T  10975790 tgattgatttcattcagttgatctttcagatccgttagcgtgacatcgacccggaccttgaacaaatga 10975722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 236 - 368
Target Start/End: Complemental strand, 21290647 - 21290515
Alignment:
Q  236 caaataaccgggacatgcatactgaaggtcttccaccctccttgtatctccgaggttgagtccttgattgatttcgtttagttgatccttcatatccttt 335  Q
    |||||||||||||| |||||| |||||| | ||||||||| |||  |||||| ||||||||||||| |||||||| || |||||||||||||||||||||    
T  21290647 caaataaccgggacgtgcatattgaaggccatccaccctctttgcgtctccggggttgagtccttggttgatttcattcagttgatccttcatatccttt 21290548  T
Q  336 agcgtgatatcgacccggaccttgaacaaatga 368  Q
    ||||||||||||| |||||||||||||||||||    
T  21290547 agcgtgatatcgaaccggaccttgaacaaatga 21290515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 34 - 265
Target Start/End: Complemental strand, 31238242 - 31238009
Alignment:
Q  34 caagaattaaacttaaattccaacaaaataaagacactacctaaacataatttcatggccgaatcaaattgttgagaata--tctttcggcgatctcagc 131  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||||| |||    |||   ||||||| || ||||||||  ||||  ||  ||||||||    
T  31238242 caagaattaaacttaaattccaacaaaataaagtcactaactaaacacaatcatctggaaaaatcaaactgctgagaatacgtcttcaggtcatctcagc 31238143  T
Q  132 aacgtagcttccaactcaatcaccgtgaacatgtgttcccgataatatctggagaacatgctcttcacatagtcatcgtctgccagcattatcttttggc 231  Q
    ||||||||||| | || ||| |  | |||||||||||| ||||||| | ||||||||| ||||||||   |||||||||||| || ||||| ||||| |     
T  31238142 aacgtagcttcaatcttaattattgggaacatgtgttcacgataatgtttggagaacaagctcttcaagcagtcatcgtctgtcaacattaccttttcgg 31238043  T
Q  232 ccttcaaataaccgggacatgcatactgaaggtc 265  Q
     || ||||||| |||||| |||||||||||||||    
T  31238042 tctgcaaataatcgggacgtgcatactgaaggtc 31238009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 70 - 199
Target Start/End: Complemental strand, 21294035 - 21293908
Alignment:
Q  70 ctacctaaacataatttcatggccgaatcaaattgttgagaatatctttcggcgatctcagcaacgtagcttccaactcaatcaccgtgaacatgtgttc 169  Q
    |||||||||||||||||  |||| |||||||| |  ||||||||||||  | ||||||||||||||||||||||| |||| | |||| ||||||| ||||    
T  21294035 ctacctaaacataattttctggcagaatcaaact--tgagaatatcttcagacgatctcagcaacgtagcttccatctcatttaccgggaacatgcgttc 21293938  T
Q  170 ccgataatatctggagaacatgctcttcac 199  Q
    | |||||||||||||| |||||||| ||||    
T  21293937 ctgataatatctggagcacatgctcctcac 21293908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 16 - 137
Target Start/End: Complemental strand, 19748346 - 19748209
Alignment:
Q  16 acatcatcagcaaactaacaagaattaaacttaaattccaacaaaataaagaca----------------ctacctaaacataatttcatggccgaatca 99  Q
    ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||                |||||||| |||||| | ||||| ||||||    
T  19748346 acatcttcagcaaactaacaagaattaaagttaaattccaacaaaataaagacaatacataataatgacgctacctaatcataatcttatggcggaatca 19748247  T
Q  100 aattgttgagaatatctttcggcgatctcagcaacgta 137  Q
    ||||||||||||||||||  ||||||||||||||||||    
T  19748246 aattgttgagaatatcttcaggcgatctcagcaacgta 19748209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 16 - 73
Target Start/End: Original strand, 23228598 - 23228655
Alignment:
Q  16 acatcatcagcaaactaacaagaattaaacttaaattccaacaaaataaagacactac 73  Q
    ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  23228598 acatcttcagcaaacaaacaagaattaaacttaaattccaacaaaataaagacactac 23228655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 22 - 69
Target Start/End: Complemental strand, 31488256 - 31488209
Alignment:
Q  22 tcagcaaactaacaagaattaaacttaaattccaacaaaataaagaca 69  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  31488256 tcagcaaactaacaagaattaaacttaaatttcaacaaaataaagaca 31488209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 16 - 77
Target Start/End: Original strand, 13130905 - 13130966
Alignment:
Q  16 acatcatcagcaaactaacaagaattaaacttaaattccaacaaaataaagacactacctaa 77  Q
    ||||| |||||||||||||||||||| || ||||| |||||||||||||||||| |||||||    
T  13130905 acatcttcagcaaactaacaagaatttaatttaaactccaacaaaataaagacattacctaa 13130966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 16 - 77
Target Start/End: Original strand, 25360404 - 25360465
Alignment:
Q  16 acatcatcagcaaactaacaagaattaaacttaaattccaacaaaataaagacactacctaa 77  Q
    ||||| |||||||||||||||||||| || ||||||||||||| ||||| ||||||||||||    
T  25360404 acatcttcagcaaactaacaagaatttaatttaaattccaacagaataaggacactacctaa 25360465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 26 - 77
Target Start/End: Original strand, 36311776 - 36311827
Alignment:
Q  26 caaactaacaagaattaaacttaaattccaacaaaataaagacactacctaa 77  Q
    |||||||||||||||| |  ||||||||||||||||||||||||||||||||    
T  36311776 caaactaacaagaatttattttaaattccaacaaaataaagacactacctaa 36311827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 253 - 366
Target Start/End: Original strand, 16418281 - 16418394
Alignment:
Q  253 catactgaaggtcttccaccctccttgtatctccgaggttgagtccttgattgatttcgtttagttgatccttcatatcctttagcgtgatatcgacccg 352  Q
    |||| |||| |||||||||||||||| ||||| || ||||||||||||| |||||||  || |||||| ||||||  || |||| ||||| |||| | ||    
T  16418281 catattgaacgtcttccaccctccttctatctgcggggttgagtccttggttgatttaattcagttgacccttcagttcttttaacgtgacatcgtctcg 16418380  T
Q  353 gaccttgaacaaat 366  Q
     ||||| |||||||    
T  16418381 aaccttaaacaaat 16418394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 26 - 73
Target Start/End: Original strand, 12067557 - 12067605
Alignment:
Q  26 caaactaacaagaattaaa-cttaaattccaacaaaataaagacactac 73  Q
    ||||||||||||||||||| | |||||||||||||||||||||||||||    
T  12067557 caaactaacaagaattaaaacgtaaattccaacaaaataaagacactac 12067605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 25 - 69
Target Start/End: Original strand, 22858233 - 22858276
Alignment:
Q  25 gcaaactaacaagaattaaacttaaattccaacaaaataaagaca 69  Q
    |||||||||||||||||||||||||||| ||||||||||||||||    
T  22858233 gcaaactaacaagaattaaacttaaatt-caacaaaataaagaca 22858276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 15798007 - 15798061
Alignment:
Q  16 acatcatcagcaaactaacaagaattaaacttaaa-ttccaacaaaataaagaca 69  Q
    ||||| ||| ||||||||||||||||||||||||| ||| |||||||||||||||    
T  15798007 acatcttcaacaaactaacaagaattaaacttaaatttctaacaaaataaagaca 15798061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 273 - 325
Target Start/End: Original strand, 13131288 - 13131340
Alignment:
Q  273 ctccttgtatctccgaggttgagtccttgattgatttcgtttagttgatcctt 325  Q
    |||||||| |||||| |||||||||||||||||||||| | | ||||||||||    
T  13131288 ctccttgtgtctccggggttgagtccttgattgatttcatctcgttgatcctt 13131340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 266 - 325
Target Start/End: Complemental strand, 2599229 - 2599170
Alignment:
Q  266 ttccaccctccttgtatctccgaggttgagtccttgattgatttcgtttagttgatcctt 325  Q
    ||||||||||||||| |||||| |||||| |||||| |||| ||| || |||||||||||    
T  2599229 ttccaccctccttgtgtctccggggttgactccttggttgaattcattcagttgatcctt 2599170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 266 - 325
Target Start/End: Complemental strand, 12742725 - 12742666
Alignment:
Q  266 ttccaccctccttgtatctccgaggttgagtccttgattgatttcgtttagttgatcctt 325  Q
    ||||||||| ||||| |||||| |||||| |||||| |||| ||| ||||||||||||||    
T  12742725 ttccacccttcttgtgtctccggggttgactccttggttgaattcatttagttgatcctt 12742666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 266 - 325
Target Start/End: Complemental strand, 12805543 - 12805484
Alignment:
Q  266 ttccaccctccttgtatctccgaggttgagtccttgattgatttcgtttagttgatcctt 325  Q
    ||||||||| ||||| |||||| |||||| |||||| |||| ||| ||||||||||||||    
T  12805543 ttccacccttcttgtgtctccggggttgactccttggttgaattcatttagttgatcctt 12805484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 266 - 325
Target Start/End: Original strand, 25360790 - 25360849
Alignment:
Q  266 ttccaccctccttgtatctccgaggttgagtccttgattgatttcgtttagttgatcctt 325  Q
    ||||||||||||||| ||| || ||||||||||||| |||||||| |  |||||||||||    
T  25360790 ttccaccctccttgtgtcttcggggttgagtccttggttgatttcatccagttgatcctt 25360849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 266 - 325
Target Start/End: Original strand, 36312151 - 36312210
Alignment:
Q  266 ttccaccctccttgtatctccgaggttgagtccttgattgatttcgtttagttgatcctt 325  Q
    |||||||||||| || |||||| ||||||||||||| |||||||| |  |||||||||||    
T  36312151 ttccaccctcctcgtgtctccggggttgagtccttggttgatttcatcaagttgatcctt 36312210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 144
Target Start/End: Complemental strand, 37396901 - 37396848
Alignment:
Q  91 gccgaatcaaattgttgagaatatctttcggcgatctcagcaacgtagcttcca 144  Q
    ||||||||||| | |||||||||||||  || ||||||||||||||||| ||||    
T  37396901 gccgaatcaaactcttgagaatatcttcaggtgatctcagcaacgtagcatcca 37396848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 273 - 325
Target Start/End: Original strand, 15798294 - 15798346
Alignment:
Q  273 ctccttgtatctccgaggttgagtccttgattgatttcgtttagttgatcctt 325  Q
    |||||||| |||||| ||||||||||||  |||||||| || |||||||||||    
T  15798294 ctccttgtgtctccggggttgagtccttagttgatttcattcagttgatcctt 15798346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 310
Target Start/End: Original strand, 23228874 - 23228918
Alignment:
Q  266 ttccaccctccttgtatctccgaggttgagtccttgattgatttc 310  Q
    ||||||||||||||| |||||| |||||||| |||| ||||||||    
T  23228874 ttccaccctccttgtgtctccggggttgagttcttggttgatttc 23228918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 126; Significance: 7e-65; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 16 - 366
Target Start/End: Original strand, 21760314 - 21760680
Alignment:
Q  16 acatcatcagcaaactaacaagaattaaacttaaattccaacaaaataaagacactac----------------ctaaacataatttcatggccgaatca 99  Q
    ||||| ||| |||||||| |||||||||||||||||||||| ||||||||||||||||                ||||||||||||  ||||  ||||||    
T  21760314 acatcttcaacaaactaataagaattaaacttaaattccaataaaataaagacactacataataatgatgctacctaaacataattatatggtagaatca 21760413  T
Q  100 aattgttgagaatatctttcggcgatctcagcaacgtagcttccaactcaatcaccgtgaacatgtgttcccgataatatctggagaacatgctcttcac 199  Q
    || |||||||||||||||  | |||||||| |||||| | ||||| |||||||  || |||||||||||||  ||||||||| ||||||||| || ||||    
T  21760414 aactgttgagaatatcttcagacgatctcatcaacgtggtttccatctcaatcctcgggaacatgtgttccttataatatctagagaacatgttcctcac 21760513  T
Q  200 atagtcatcgtctgccagcattatcttttggcccttcaaataaccgggacatgcatactgaaggtcttccaccctccttgtatctccgaggttgagtcct 299  Q
     |||||||| | |  ||||||||  |||| || || ||||||| |||||| ||||||||||||||| || ||||| ||||| | |||| ||||||| |||    
T  21760514 gtagtcatcatttttcagcattagtttttcgctctgcaaataatcgggacgtgcatactgaaggtcctcaacccttcttgtgtttccggggttgaggcct 21760613  T
Q  300 tgattgatttcgtttagttgatccttcatatcctttagcgtgatatcgacccggaccttgaacaaat 366  Q
    |||||||||||||| ||||||||||||| |||||||||||||| |||||||| ||||||||||||||    
T  21760614 tgattgatttcgttcagttgatccttcagatcctttagcgtgacatcgaccctgaccttgaacaaat 21760680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 77 - 322
Target Start/End: Original strand, 11789153 - 11789398
Alignment:
Q  77 aacataatttcatggccgaatcaaattgttgagaatatctttcggcgatctcagcaacgtagcttccaactcaatcaccgtgaacatgtgttcccgataa 176  Q
    ||||||||||  |||| |||||||| |||| ||||||||||  |||||||||| |||||| |||| || |||||| || | |||||||||||||  ||||    
T  11789153 aacataattttctggcagaatcaaactgtttagaatatcttcaggcgatctcaacaacgtggcttgcatctcaattactgggaacatgtgttccttataa 11789252  T
Q  177 tatctggagaacatgctcttcacatagtcatcgtctgccagcattatcttttggcccttcaaataaccgggacatgcatactgaaggtcttccaccctcc 276  Q
    ||| ||||||||||| || || |  ||||||||| || |||||||||||||| |   | ||||||| ||| || ||||||| | ||||| |||| |||||    
T  11789253 tatatggagaacatgttcctctcgcagtcatcgtttgtcagcattatctttttggtatgcaaataaacggaacttgcatacagtaggtcctccagcctcc 11789352  T
Q  277 ttgtatctccgaggttgagtccttgattgatttcgtttagttgatc 322  Q
    |||| |||| |||||||||||||||||||||||| || ||||||||    
T  11789353 ttgtgtctctgaggttgagtccttgattgatttcattcagttgatc 11789398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 24 - 73
Target Start/End: Original strand, 19262347 - 19262396
Alignment:
Q  24 agcaaactaacaagaattaaacttaaattccaacaaaataaagacactac 73  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19262347 agcaaactaacaagaattaaacttaaattccaacaaaataaagacactac 19262396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 16 - 73
Target Start/End: Original strand, 11789072 - 11789129
Alignment:
Q  16 acatcatcagcaaactaacaagaattaaacttaaattccaacaaaataaagacactac 73  Q
    ||||| |||| ||||||||||||||||||||| |||||||||||||||||||| ||||    
T  11789072 acatcttcagtaaactaacaagaattaaactttaattccaacaaaataaagactctac 11789129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 22 - 73
Target Start/End: Complemental strand, 15471807 - 15471755
Alignment:
Q  22 tcagcaaactaacaagaattaaa-cttaaattccaacaaaataaagacactac 73  Q
    ||||||||||||||||||||||| |||||||| ||||||||||||||||||||    
T  15471807 tcagcaaactaacaagaattaaaacttaaattgcaacaaaataaagacactac 15471755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 266 - 336
Target Start/End: Original strand, 48707113 - 48707183
Alignment:
Q  266 ttccaccctccttgtatctccgaggttgagtccttgattgatttcgtttagttgatccttcatatccttta 336  Q
    ||||||||||||||| |||||  ||||||||||||| |||||||| || ||||||||||||| ||| ||||    
T  48707113 ttccaccctccttgtgtctccagggttgagtccttggttgatttcattcagttgatccttcagatctttta 48707183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 26 - 69
Target Start/End: Original strand, 48706839 - 48706883
Alignment:
Q  26 caaactaacaagaattaaacttaaattccaac-aaaataaagaca 69  Q
    |||||||||||||||||||||||||||||||| ||||||||||||    
T  48706839 caaactaacaagaattaaacttaaattccaacaaaaataaagaca 48706883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 70
Target Start/End: Complemental strand, 26793593 - 26793539
Alignment:
Q  15 gacatcatcagcaaactaacaagaattaaacttaaattccaacaaaataaagacac 70  Q
    |||||| |||||||||||||||||||||||| |||| ||||||||||||| |||||    
T  26793593 gacatcttcagcaaactaacaagaattaaac-taaaatccaacaaaataatgacac 26793539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 81
Target Start/End: Original strand, 39899836 - 39899889
Alignment:
Q  27 aaactaacaagaattaaacttaaattccaacaaaataaagacactacctaaacat 81  Q
    |||||||||||||||||||| |||| |||||||||||| ||||| ||||||||||    
T  39899836 aaactaacaagaattaaactaaaat-ccaacaaaataaggacacaacctaaacat 39899889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 266 - 325
Target Start/End: Complemental strand, 5765217 - 5765158
Alignment:
Q  266 ttccaccctccttgtatctccgaggttgagtccttgattgatttcgtttagttgatcctt 325  Q
    |||||||||||||||||||||| |||||| |||||| |||| ||| || |||| ||||||    
T  5765217 ttccaccctccttgtatctccggggttgactccttggttgaattcattcagttcatcctt 5765158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 266 - 325
Target Start/End: Complemental strand, 15471529 - 15471470
Alignment:
Q  266 ttccaccctccttgtatctccgaggttgagtccttgattgatttcgtttagttgatcctt 325  Q
    |||||| |||||||| |||||| ||||||| ||||| |||||||| || |||||||||||    
T  15471529 ttccacactccttgtgtctccggggttgagaccttggttgatttcattcagttgatcctt 15471470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 266 - 325
Target Start/End: Original strand, 47488232 - 47488291
Alignment:
Q  266 ttccaccctccttgtatctccgaggttgagtccttgattgatttcgtttagttgatcctt 325  Q
    |||||||||||||| ||||| | |||||| ||||||||||| ||| || |||||||||||    
T  47488232 ttccaccctccttgcatctctggggttgactccttgattgaattcattcagttgatcctt 47488291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 270 - 364
Target Start/End: Complemental strand, 26793311 - 26793217
Alignment:
Q  270 accctccttgtatctccgaggttgagtccttgattgatttcgtttagttgatccttcatatcctttagcgtgatatcgacccggaccttgaacaa 364  Q
    ||||||||||| |||| | |||| |||| ||| |||||||| || |||||||  || ||||| |||| ||||| |||| |||| |||||||||||    
T  26793311 accctccttgtgtctctgtggtttagtctttgcttgatttcattcagttgataatttatatcttttaacgtgacatcgtcccgaaccttgaacaa 26793217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 138
Target Start/End: Complemental strand, 26793507 - 26793458
Alignment:
Q  89 tggccgaatcaaattgttgagaatatctttcggcgatctcagcaacgtag 138  Q
    ||||||||||||| | |||||||||||||  |||||||||||||| ||||    
T  26793507 tggccgaatcaaactcttgagaatatcttctggcgatctcagcaatgtag 26793458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 112; Significance: 2e-56; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 16 - 379
Target Start/End: Complemental strand, 27783730 - 27783352
Alignment:
Q  16 acatcatcagcaaactaacaagaattaaacttaaattccaacaaaataaagacactac----------------ctaaacataatttcatggccgaatca 99  Q
    ||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||                ||||||||||| |  || | ||||||    
T  27783730 acatcttccgcaaactaacaagaattgaacttaaattccaacaaaataaagacactacataataatgatgctacctaaacataatcttgtgacagaatca 27783631  T
Q  100 aattgttga-gaatatctttcggcgatctcagcaacgtagcttccaactcaatcaccgtgaacatgtgttcccgataatatctggagaacatgctcttca 198  Q
    || | || | ||||||||| | |||||||||||||||||| ||||| |||||||   | ||||||| ||||| ||  |||||||||||||||| || | |    
T  27783630 aactcttaaagaatatctt-cagcgatctcagcaacgtagattccatctcaatccttgggaacatgcgttcctgacgatatctggagaacatgttcctaa 27783532  T
Q  199 catagtcatcgtctgccagcattatcttttggcccttcaaataaccgggacatgcatactgaaggtcttccaccctccttgtatctccgaggttgagtcc 298  Q
    || ||||||||||||  |||||||| ||| || | | |||||||| | ||  ||||||||||||||| |||| ||||||||| |||| ||||||||||||    
T  27783531 cacagtcatcgtctgttagcattatttttcggtc-tgcaaataactgtgatgtgcatactgaaggtcctccaacctccttgtgtctctgaggttgagtcc 27783433  T
Q  299 ttgattgatttcgtttagttgatccttcatatcctttagcgtgatatcgacccggaccttgaacaaatgatgatgtccatc 379  Q
    ||||||||||||||| |||||||| |||| ||||||||| |||| ||| ||||||||||||||||||||| ||| ||||||    
T  27783432 ttgattgatttcgttcagttgatctttcagatcctttagtgtgacatctacccggaccttgaacaaatgaggatttccatc 27783352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 122 - 364
Target Start/End: Complemental strand, 8751922 - 8751681
Alignment:
Q  122 cgatctcagcaacgtagcttccaactcaatcaccgtgaacatgtgttcccgataatatctggagaacatgctcttcacatagtcatcgtctgccagcatt 221  Q
    |||||||| ||||||| |||||| |||||||  || ||| ||| ||||| || |||||||||| ||||||||| | ||  |||||||||||| |||||||    
T  8751922 cgatctcaacaacgtaacttccatctcaatcctcgggaatatgcgttcctgacaatatctggaaaacatgctccttacgcagtcatcgtctgtcagcatt 8751823  T
Q  222 atcttttggcccttcaaataaccgggacatgcatactgaaggtcttccaccctccttgtatctccgaggttgagtccttgattgatttcgtttagttgat 321  Q
    |||||| ||   | |||||||||||||| ||||||||||||||| |||||| ||||||| |||||| | |||||||||||||| ||||||||||||||||    
T  8751822 atctttcggtt-tgcaaataaccgggacttgcatactgaaggtcctccaccttccttgtgtctccgggattgagtccttgatttatttcgtttagttgat 8751724  T
Q  322 ccttcatatcctttagcgtgatatcgacccggaccttgaacaa 364  Q
     ||||| |||||||||||||| ||||| |||||||||||||||    
T  8751723 tcttcagatcctttagcgtgacatcgatccggaccttgaacaa 8751681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 16 - 287
Target Start/End: Complemental strand, 10204855 - 10204569
Alignment:
Q  16 acatcatcagcaaactaacaagaattaaacttaaattccaacaaaataaagacactac----------------ctaaacataatttcatggccgaatca 99  Q
    ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||                |||||||||||||  |||| ||||||    
T  10204855 acatcttcagcaaactaactagaattaaacttaaattccaacaaaataaagacactacatcataatgatgctacctaaacataatttt-tggcagaatca 10204757  T
Q  100 aattgttgagaatatctttcggcgatctcagcaacgtagcttccaactcaatcaccgtgaacatgtgttcccgataatatctggagaacatgctcttcac 199  Q
    ||||||| ||||||||||  ||||||||||||||||||||||||| || ||| |||  |||||||  ||||  |||||||||||||||||||||| ||||    
T  10204756 aattgtttagaatatcttcaggcgatctcagcaacgtagcttccatcttaattaccaggaacatgcattccttataatatctggagaacatgctcctcac 10204657  T
Q  200 atagtcatcgtctgccagcattatcttttggcccttcaaataaccgggacatgcatactgaaggtcttccaccctccttgtatctccg 287  Q
    | || ||||||||| ||||||||||||||    || ||||||||| |||||||||||| ||||||| || ||||||||||| ||||||    
T  10204656 acagccatcgtctgtcagcattatcttttctgtctgcaaataaccaggacatgcatacggaaggtcctcaaccctccttgtgtctccg 10204569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 70 - 368
Target Start/End: Original strand, 24629922 - 24630224
Alignment:
Q  70 ctacctaaacataatttcatggccgaatcaaattgttgagaatatctttcggcgatctcagcaacgtagcttccaactcaatcaccgtgaacatgtgttc 169  Q
    ||||||||||||||| |  |||| |||||||| | |||||||||||||  ||||||||||||||| ||||||||  |||||||  || ||||||    |     
T  24629922 ctacctaaacataatcttgtggcagaatcaaactcttgagaatatcttcaggcgatctcagcaacatagcttccgtctcaatcctcgggaacatacaatg 24630021  T
Q  170 ccgataatatctggagaacatgctcttcacatagtcatcgtctgccagcattatcttttggcccttcaaataaccgggacatgcata----ctgaaggtc 265  Q
      ||| |||| |||||||||||||| ||||  ||||||| |||  || |||||||||||    || |||||||||| ||  ||||||    || || ||     
T  24630022 ttgatgatatatggagaacatgctcctcacccagtcatcctctatcaacattatcttttcagactgcaaataaccgagatgtgcatatatactaaaagtt 24630121  T
Q  266 ttccaccctccttgtatctccgaggttgagtccttgattgatttcgtttagttgatccttcatatcctttagcgtgatatcgacccggaccttgaacaaa 365  Q
     |||||||||||||||||||||  ||||||||||||||| ||||| |  | ||||||||||| ||||||||  |||||||| ||||| ||| | ||||||    
T  24630122 ctccaccctccttgtatctccggagttgagtccttgatttatttcatacaattgatccttcagatcctttaatgtgatatcaacccgaaccataaacaaa 24630221  T
Q  366 tga 368  Q
    |||    
T  24630222 tga 24630224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 25 - 137
Target Start/End: Original strand, 12504688 - 12504803
Alignment:
Q  25 gcaaactaacaagaattaaacttaaattccaacaaaataaagacactacctaaacataa--tttc-atggccgaatcaaattgttgagaatatctttcgg 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||  || |  || | ||||| ||||||||   |||||||||||||| ||    
T  12504688 gcaaactaacaagaattaaacttaaattccaacaaaataaagacactacataataatgacgttacgatggcagaatcaaacgcttgagaatatctttagg 12504787  T
Q  122 cgatctcagcaacgta 137  Q
    |||||| |||||||||    
T  12504788 cgatcttagcaacgta 12504803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 65
Target Start/End: Complemental strand, 26140428 - 26140385
Alignment:
Q  22 tcagcaaactaacaagaattaaacttaaattccaacaaaataaa 65  Q
    |||| ||||||||||||||||||| |||||||||||||||||||    
T  26140428 tcagtaaactaacaagaattaaacataaattccaacaaaataaa 26140385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 264 - 336
Target Start/End: Original strand, 12785392 - 12785464
Alignment:
Q  264 tcttccaccctccttgtatctccgaggttgagtccttgattgatttcgtttagttgatccttcatatccttta 336  Q
    |||||||||||| |||| |||||| ||||||||| ||| |||||||| |  ||||||||||||| ||| ||||    
T  12785392 tcttccaccctctttgtgtctccgtggttgagtcattggttgatttcatccagttgatccttcagatctttta 12785464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 73
Target Start/End: Original strand, 24629873 - 24629909
Alignment:
Q  37 gaattaaacttaaattccaacaaaataaagacactac 73  Q
    ||||| |||||||||||||||||||||||||||||||    
T  24629873 gaattcaacttaaattccaacaaaataaagacactac 24629909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 322
Target Start/End: Original strand, 12504917 - 12504973
Alignment:
Q  266 ttccaccctccttgtatctccgaggttgagtccttgattgatttcgtttagttgatc 322  Q
    ||||||||||||||| |||| | |||||||| |||  |||||||| |||||||||||    
T  12504917 ttccaccctccttgtgtctctggggttgagttcttcgttgatttcatttagttgatc 12504973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 99; Significance: 9e-49; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 70 - 368
Target Start/End: Original strand, 12309600 - 12309898
Alignment:
Q  70 ctacctaaacataatttcatggccgaatcaaattgttgagaatatctttcggcgatctcagcaacgtagcttccaactcaatcaccgtgaacatgtgttc 169  Q
    ||||||||||||||| |  |||| |||||||| | |||||||||||||   |||||||||||||| | ||||||| |||||||  || ||||||| | |     
T  12309600 ctacctaaacataatcttgtggcagaatcaaactcttgagaatatcttcatgcgatctcagcaacctggcttccatctcaatcctcgggaacatgcggtg 12309699  T
Q  170 ccgataatatctggagaacatgctcttcacatagtcatcgtctgccagcattatcttttggcccttcaaataaccgggacatgcatactgaaggtcttcc 269  Q
    | ||  ||||  ||||||||||||| ||||| ||||||||||||||| ||||||||  | |  || |||  ||||||||| ||||||||||| ||| |||    
T  12309700 ctgacgatatacggagaacatgctcctcacacagtcatcgtctgccatcattatctcgtcggactgcaataaaccgggacgtgcatactgaacgtcctcc 12309799  T
Q  270 accctccttgtatctccgaggttgagtccttgattgatttcgtttagttgatccttcatatcctttagcgtgatatcgacccggaccttgaacaaatga 368  Q
    |||||| |||| |||||| ||||||||||||| |||||||  || ||||| ||||| | |||||||||||||| ||||||| | |||||||||||||||    
T  12309800 accctctttgtgtctccggggttgagtccttggttgattttattaagttggtcctttagatcctttagcgtgacatcgacctgaaccttgaacaaatga 12309898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 72 - 368
Target Start/End: Complemental strand, 26926711 - 26926415
Alignment:
Q  72 acctaaacataatttcatggccgaatcaaattgttgagaatatctttcggcgatctcagcaacgtagcttccaactcaatcaccgtgaacatgtgttccc 171  Q
    ||||||| ||||| |  |||| |||||||| | |||||||||||||  |||||||||| ||| | |||||||| |||||||  |  |||||||   | |     
T  26926711 acctaaatataatcttgtggcagaatcaaactcttgagaatatcttcaggcgatctcatcaatgcagcttccatctcaatcctcaagaacatgcagtgct 26926612  T
Q  172 gataatatctggagaacatgctcttcacatagtcatcgtctgccagcattatcttttggcccttcaaataaccgggacatgcatactgaaggtcttccac 271  Q
     |  |||| |||||||||||||| ||||||  ||||||| || |||||||||||||| |  || ||||||| |||||| ||||| ||||||||| |||||    
T  26926611 aacgatatatggagaacatgctcctcacattatcatcgtttgtcagcattatcttttcggactacaaataatcgggacgtgcatcctgaaggtcctccac 26926512  T
Q  272 cctccttgtatctccgaggttgagtccttgattgatttcgtttagttgatccttcatatcctttagcgtgatatcgacccggaccttgaacaaatga 368  Q
    ||||||||| |||||| | || ||||||||||||||||| || ||||||||||||| |||||||||| ||| ||| ||||| |||||||||||||||    
T  26926511 cctccttgtgtctccgggtttcagtccttgattgatttcattcagttgatccttcagatcctttagcatgacatcaacccgaaccttgaacaaatga 26926415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 236 - 366
Target Start/End: Complemental strand, 7062274 - 7062144
Alignment:
Q  236 caaataaccgggacatgcatactgaaggtcttccaccctccttgtatctccgaggttgagtccttgattgatttcgtttagttgatccttcatatccttt 335  Q
    ||||||||||||||||||||||| |||||| |||||||||||||  |||||  ||||||| |||||||||||||| || ||||| ||||||| |||||||    
T  7062274 caaataaccgggacatgcatactaaaggtcctccaccctccttgcgtctccagggttgaggccttgattgatttcattcagttgttccttcagatccttt 7062175  T
Q  336 agcgtgatatcgacccggaccttgaacaaat 366  Q
    ||||||| || ||||||||||||| ||||||    
T  7062174 agcgtgacattgacccggaccttggacaaat 7062144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 70 - 278
Target Start/End: Complemental strand, 7066869 - 7066661
Alignment:
Q  70 ctacctaaacataatttcatggccgaatcaaattgttgagaatatctttcggcgatctcagcaacgtagcttccaactcaatcaccgtgaacatgtgttc 169  Q
    ||||||||||||||| |  |||| |||||||  | || ||||||| ||  ||||||||||||||||||||||||| |||||||  |  ||||||| | |     
T  7066869 ctacctaaacataatcttgtggcagaatcaagctcttaagaatatattcaggcgatctcagcaacgtagcttccatctcaatcctcaggaacatgcggtg 7066770  T
Q  170 ccgataatatctggagaacatgctcttcacatagtcatcgtctgccagcattatcttttggcccttcaaataaccgggacatgcatactgaaggtcttcc 269  Q
    | ||  |||| ||||||||||||||  |||  | |||||||||| ||||||||||||||    || |||||||||||||| ||||||||||||||| |||    
T  7066769 ctgacgatatatggagaacatgctccacactcaatcatcgtctgtcagcattatcttttctgactgcaaataaccgggacgtgcatactgaaggtcctcc 7066670  T
Q  270 accctcctt 278  Q
    |||||||||    
T  7066669 accctcctt 7066661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 16 - 129
Target Start/End: Original strand, 5282213 - 5282324
Alignment:
Q  16 acatcatcagcaaactaacaagaattaaacttaaattccaacaaaataaagacactacctaaacataatttcatggccgaatcaaattgttgagaatatc 115  Q
    ||||| |||||||||||||||| ||| || |||||||||||||| |  ||| |||||||||||||||||||  |||| ||||||||  ||||||||||||    
T  5282213 acatcttcagcaaactaacaagtatttaatttaaattccaacaaca--aaggcactacctaaacataattttctggcagaatcaaaccgttgagaatatc 5282310  T
Q  116 tttcggcgatctca 129  Q
    ||  ||||||||||    
T  5282311 ttcaggcgatctca 5282324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 15 - 73
Target Start/End: Complemental strand, 28066538 - 28066480
Alignment:
Q  15 gacatcatcagcaaactaacaagaattaaacttaaattccaacaaaataaagacactac 73  Q
    |||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  28066538 gacatcttcagtaaactaacaagaattaaacttaaattccaacaaaataaagacactac 28066480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 16 - 73
Target Start/End: Original strand, 7414126 - 7414183
Alignment:
Q  16 acatcatcagcaaactaacaagaattaaacttaaattccaacaaaataaagacactac 73  Q
    ||||| ||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  7414126 acatcttcagcaaactaacaagaattaaacttaaattcacacaaaataaagacactac 7414183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 31267357 - 31267301
Alignment:
Q  17 catcatcagcaaactaacaagaattaaacttaaattccaacaaaataaagacactac 73  Q
    |||| ||||||||||| ||||||||||||||||||||| ||||||||||||||||||    
T  31267357 catcttcagcaaactatcaagaattaaacttaaattcccacaaaataaagacactac 31267301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 3925026 - 3924973
Alignment:
Q  16 acatcatcagcaaactaacaagaattaaacttaaattccaacaaaataaagaca 69  Q
    ||||| ||||| |||||| |||||||||||||||||||||||||||||||||||    
T  3925026 acatcttcagcgaactaataagaattaaacttaaattccaacaaaataaagaca 3924973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 16 - 73
Target Start/End: Complemental strand, 12083213 - 12083156
Alignment:
Q  16 acatcatcagcaaactaacaagaattaaacttaaattccaacaaaataaagacactac 73  Q
    ||||| |||| |||| |||||||||||||||||||||| |||||||||||||||||||    
T  12083213 acatcttcagaaaacaaacaagaattaaacttaaattcgaacaaaataaagacactac 12083156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 266 - 327
Target Start/End: Original strand, 27318030 - 27318091
Alignment:
Q  266 ttccaccctccttgtatctccgaggttgagtccttgattgatttcgtttagttgatccttca 327  Q
    ||||||||||||||| ||||| || |||||||||||||||||||| || |||||||||||||    
T  27318030 ttccaccctccttgtgtctccaagattgagtccttgattgatttcattcagttgatccttca 27318091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 25 - 73
Target Start/End: Original strand, 27317754 - 27317802
Alignment:
Q  25 gcaaactaacaagaattaaacttaaattccaacaaaataaagacactac 73  Q
    |||||||||||||| ||||| ||||||||||||||||||||||||||||    
T  27317754 gcaaactaacaagatttaaatttaaattccaacaaaataaagacactac 27317802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 26 - 77
Target Start/End: Original strand, 3380501 - 3380552
Alignment:
Q  26 caaactaacaagaattaaacttaaattccaacaaaataaagacactacctaa 77  Q
    ||||| |||||||||| || ||||||||||||||||||||||||||||||||    
T  3380501 caaaccaacaagaatttaatttaaattccaacaaaataaagacactacctaa 3380552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 266 - 325
Target Start/End: Complemental strand, 18146972 - 18146913
Alignment:
Q  266 ttccaccctccttgtatctccgaggttgagtccttgattgatttcgtttagttgatcctt 325  Q
    ||||||||||||||| |||||| ||||||||||||| |||||||| || |||||||||||    
T  18146972 ttccaccctccttgtgtctccggggttgagtccttggttgatttcattcagttgatcctt 18146913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 277 - 368
Target Start/End: Original strand, 41935570 - 41935661
Alignment:
Q  277 ttgtatctccgaggttgagtccttgattgatttcgtttagttgatccttcatatcctttagcgtgatatcgacccggaccttgaacaaatga 368  Q
    |||| |||| ||||||||||||||  ||||||| ||| || |||||||||| |||||||||||||| | || |||| |||||| ||||||||    
T  41935570 ttgtgtctctgaggttgagtccttatttgattttgttcagctgatccttcagatcctttagcgtgacagcggcccgaaccttgcacaaatga 41935661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 266 - 368
Target Start/End: Complemental strand, 3924825 - 3924723
Alignment:
Q  266 ttccaccctccttgtatctccgaggttgagtccttgattgatttcgtttagttgatccttcatatcctttagcgtgatatcgacccggaccttgaacaaa 365  Q
    ||||||||||||||| ||||   ||||||||| ||| ||||||| ||| |||||||| |||| |||||||||||| | ||||| ||| |||||| | |||    
T  3924825 ttccaccctccttgtgtctctagggttgagtctttggttgattttgttcagttgatctttcagatcctttagcgtcacatcgaaccgaaccttgcataaa 3924726  T
Q  366 tga 368  Q
    |||    
T  3924725 tga 3924723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 73
Target Start/End: Complemental strand, 7066931 - 7066882
Alignment:
Q  24 agcaaactaacaagaattaaacttaaattccaacaaaataaagacactac 73  Q
    ||||||||  || |||||||||||||||||||||||||||||||||||||    
T  7066931 agcaaactttcatgaattaaacttaaattccaacaaaataaagacactac 7066882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 26 - 77
Target Start/End: Complemental strand, 11825028 - 11824977
Alignment:
Q  26 caaactaacaagaattaaacttaaattccaacaaaataaagacactacctaa 77  Q
    ||||| |||||||||| || |||||||||||||||| |||||||||||||||    
T  11825028 caaaccaacaagaatttaatttaaattccaacaaaagaaagacactacctaa 11824977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 69
Target Start/End: Original strand, 12309536 - 12309583
Alignment:
Q  22 tcagcaaactaacaagaattaaacttaaattccaacaaaataaagaca 69  Q
    ||||||||||  || |||||||||||||||||||||||||||||||||    
T  12309536 tcagcaaacttccatgaattaaacttaaattccaacaaaataaagaca 12309583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 58
Target Start/End: Original strand, 5282475 - 5282517
Alignment:
Q  16 acatcatcagcaaactaacaagaattaaacttaaattccaaca 58  Q
    ||||| ||||||||||||||||||||| |||||||||||||||    
T  5282475 acatcttcagcaaactaacaagaattagacttaaattccaaca 5282517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 247 - 366
Target Start/End: Original strand, 16886675 - 16886794
Alignment:
Q  247 gacatgcatactgaaggtcttccaccctccttgtatctccgaggttgagtccttgattgatttcgtttagttgatccttcatatcctttagcgtgatatc 346  Q
    ||||| |||| |||| ||||| || | ||||||| ||||   |||||| |||| | |||||||  || ||||||||||||| |||||||||||||| ||     
T  16886675 gacatccatattgaatgtctttcagcttccttgtgtctcttgggttgactcctaggttgattttattcagttgatccttcagatcctttagcgtgacatt 16886774  T
Q  347 gacccggaccttgaacaaat 366  Q
    |||||  ||||| |||||||    
T  16886775 gacccaaacctttaacaaat 16886794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 94 - 136
Target Start/End: Complemental strand, 150276 - 150234
Alignment:
Q  94 gaatcaaattgttgagaatatctttcggcgatctcagcaacgt 136  Q
    ||||||||||||||||||||||||  |||||||||| ||||||    
T  150276 gaatcaaattgttgagaatatcttcaggcgatctcaacaacgt 150234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 16886428 - 16886481
Alignment:
Q  16 acatcatcagcaaactaacaagaattaaacttaaattccaacaaaataaagaca 69  Q
    ||||| |||||||||| |||| ||||||| |||||||| || ||||||||||||    
T  16886428 acatcttcagcaaactgacaataattaaatttaaattcaaagaaaataaagaca 16886481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 310
Target Start/End: Complemental strand, 150092 - 150048
Alignment:
Q  266 ttccaccctccttgtatctccgaggttgagtccttgattgatttc 310  Q
    ||||||||| ||||| ||||| |||||||||||||| ||||||||    
T  150092 ttccacccttcttgtgtctccaaggttgagtccttggttgatttc 150048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 1321574 - 1321621
Alignment:
Q  22 tcagcaaactaacaagaattaaacttaaattccaacaaaataaagacac 70  Q
    ||||||||||| || ||||||||||| |||||||||||||||| |||||    
T  1321574 tcagcaaactaccatgaattaaactt-aattccaacaaaataacgacac 1321621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 310
Target Start/End: Complemental strand, 12082935 - 12082891
Alignment:
Q  266 ttccaccctccttgtatctccgaggttgagtccttgattgatttc 310  Q
    ||||||||||||||| |||||| ||||||||| ||| ||||||||    
T  12082935 ttccaccctccttgtgtctccggggttgagtcgttggttgatttc 12082891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 37 - 65
Target Start/End: Complemental strand, 23553642 - 23553614
Alignment:
Q  37 gaattaaacttaaattccaacaaaataaa 65  Q
    |||||||||||||||||||||||||||||    
T  23553642 gaattaaacttaaattccaacaaaataaa 23553614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 325
Target Start/End: Complemental strand, 28066256 - 28066200
Alignment:
Q  269 caccctccttgtatctccgaggttgagtccttgattgatttcgtttagttgatcctt 325  Q
    |||||||||||| || ||| ||||||| ||||| |||||||| | ||||||||||||    
T  28066256 caccctccttgtgtcgccggggttgagaccttggttgatttcatctagttgatcctt 28066200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0591 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0591
Description:

Target: scaffold0591; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 2894 - 2842
Alignment:
Q  16 acatcatcagcaaactaacaagaattaaacttaaattccaacaaaataaagaca 69  Q
    ||||| ||||||||||||||||||||||| ||||| ||||||||||||| ||||    
T  2894 acatcttcagcaaactaacaagaattaaa-ttaaaatccaacaaaataatgaca 2842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 73
Target Start/End: Complemental strand, 5623 - 5574
Alignment:
Q  24 agcaaactaacaagaattaaacttaaattccaacaaaataaagacactac 73  Q
    ||||||||||||| ||||||||||||||||  |||| | |||||||||||    
T  5623 agcaaactaacaacaattaaacttaaattcgcacaagacaaagacactac 5574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 70
Target Start/End: Complemental strand, 1294 - 1251
Alignment:
Q  26 caaactaacaagaattaaacttaaattccaacaaaataaagacac 70  Q
    |||||||||||||||||||| |||| ||||||||||||| |||||    
T  1294 caaactaacaagaattaaac-taaaatccaacaaaataatgacac 1251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 73
Target Start/End: Complemental strand, 36946 - 36894
Alignment:
Q  22 tcagcaaactaacaagaattaaa-cttaaattccaacaaaataaagacactac 73  Q
    ||||||||||||||| ||||||| |||||||| |||| ||||| |||||||||    
T  36946 tcagcaaactaacaaaaattaaaacttaaattgcaactaaatatagacactac 36894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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