View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5323_high_5 (Length: 357)
Name: NF5323_high_5
Description: NF5323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5323_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 1 - 328
Target Start/End: Original strand, 21120695 - 21121022
Alignment:
| Q |
1 |
aattccggttcactaagtttctcccgaaacatttcccaatctagagtcctttcacaaggtacgttctctttgaatacggtccagaggcgtggtgttgttg |
100 |
Q |
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| T |
21120695 |
aattccggttcactaagtttctcccgaaacatttcccaatctagagtcctttcacaaggtacgttctctttgaatacggtccagaggcgtggtgttgttg |
21120794 |
T |
|
| Q |
101 |
ttgtttgcgaggctgctccaaagaaggttgattccgccattaagaaagctcttcaggctgagaggcgtcgcgtttacaacaaagctcgtaaatccgagat |
200 |
Q |
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| T |
21120795 |
ttgtttgcgaggctgctccaaagaaggttgattccgccattaagaaagctcttcaggctgagaggcgtcgcgtttacaacaaagctcgtaaatccgagat |
21120894 |
T |
|
| Q |
201 |
tagaacccgtactaagaaggtaccataactgtaactttaactattttattttagattgctgtattatagctatgacattttctcgaattattatcggtgt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21120895 |
tagaacccgtactaagaaggtaccataactgtaactttaactattttattttagattgctgtattatagctatgacattttctcgaattattatcggtgt |
21120994 |
T |
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| Q |
301 |
cggcatgttagtgttggttggtgtcagt |
328 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
21120995 |
cggcatgttagtgttggttggtgtcagt |
21121022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 271 - 315
Target Start/End: Original strand, 4859142 - 4859186
Alignment:
| Q |
271 |
tatgacattttctcgaattattatcggtgtcggcatgttagtgtt |
315 |
Q |
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| T |
4859142 |
tatgtcattttctcaaattattattggtgtcgacatgttagtgtt |
4859186 |
T |
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