View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5324-Insertion-2 (Length: 1041)
Name: NF5324-Insertion-2
Description: NF5324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5324-Insertion-2 |
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Alignment Details
Target: chr1 (Bit Score: 512; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 7 - 609
Target Start/End: Original strand, 11824674 - 11825286
Alignment:
| Q |
7 |
atgtgtatcaattttcaatagattcctaaagttatttgatgtcatttaactccttattttcaataagtagtgttcgaaaaagttgtaactacta------ |
100 |
Q |
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| T |
11824674 |
atgtgtatcaattttcaatagattcctaaagttatttgatgtcatttaactccttattttcaataagtagtgttagaaaaagttgtaactactataacct |
11824773 |
T |
|
| Q |
101 |
-atgttgtttctctttttctatacaataggatcatccaagcattgttgaggaaaagtaggactgaataatacttcattgtgctaccttcaatattaatat |
199 |
Q |
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| T |
11824774 |
tatgttgtttctctttttctatacaataggatcatccaagcattgttgaggaaaagtaggactgaataatacttcattgtgctaccttcaatattaatat |
11824873 |
T |
|
| Q |
200 |
cgttgatgggttcttgtatttttaaatgttcattgtagtgtatgtgtattgtcatatgtatcatttttcataccttgtttt-ttatgccattacttaggt |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |
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| T |
11824874 |
cgttgatgggttcttgtatttttaaatgttcattgtagtgcatgtgtattgtcatatgtatcatttttcataccttgtttttttatgccattacttagat |
11824973 |
T |
|
| Q |
299 |
atgtttgttggtactttggatgcacaatacttacttttttaataatgcagttggtgtttggtctatcttcacaatattattcacaataatgcagttggta |
398 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||||| |
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| T |
11824974 |
atgtttgttggtactttggatgcacaatacttacttttttaataatgcaattggtgtttggtctatcttcacaatatcattcacaataatgccgttggta |
11825073 |
T |
|
| Q |
399 |
ttggctatttaaagagagagtcacaatatcattcacacgaagatatatatcttcatgtgaatgatatctatcttcac--atgcacgaattatgtaaatac |
496 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |||||||||| |
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| T |
11825074 |
ttggctatttaaagagagaatcacaatatcattcacacgaagatatatatcttcatgtgaatgatatctatcttcacatatatacgaatgatgtaaatac |
11825173 |
T |
|
| Q |
497 |
gattttggtaagggttttggaaatttatagctctcaaactatatatttcaaattatatcttcatatatcaaatctcaagccactcgatctttggcagtta |
596 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| |
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| T |
11825174 |
gatttcggtaagggttttggaaatttatagctctcaaactatatatttcaaattatctcttcatatatcaaatctcaagccactcaatctttggcagtta |
11825273 |
T |
|
| Q |
597 |
aaaaccttactaa |
609 |
Q |
| |
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| ||||||||||| |
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| T |
11825274 |
agaaccttactaa |
11825286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 652 - 971
Target Start/End: Original strand, 11825332 - 11825653
Alignment:
| Q |
652 |
tattagttagtacaggattctaatattattcatttggttggttgatttattggatcatattgctacaacctagattttgtgtcgaaaaaatcaatacgtt |
751 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
11825332 |
tattagttagtacatgattctaatattattcatttggttggttgatttattggatcatattgctacaacctagattttgtgtcgaaaaaatcaacacgtt |
11825431 |
T |
|
| Q |
752 |
tgtaaaactcaagcctacccaattcatatatttagttctggaaccattccgttgacttagactcgcaatttagcttattccgcaaaatacgtgccaaaac |
851 |
Q |
| |
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| T |
11825432 |
tgtaaaactcaagcctaccgaattcatatatttagttctggaaccattccgttgacttagactcgcaatttaacttattccgcaaaatacgcgccaaaac |
11825531 |
T |
|
| Q |
852 |
ccgtaagcatttttccagcagaaaacccaacttc-aaaccactttctgagttcgtttctagtccgaatcacac-aaacttatattcgaattgaagggaat |
949 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
11825532 |
ccgtaagcatttttccagcagaaaacccaacttcaaaagcactttccgagttcgtttctagtccgaatcacacaaaacttatattcgaattgaagggaat |
11825631 |
T |
|
| Q |
950 |
taagtgtagaatccaaatatcc |
971 |
Q |
| |
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|||| ||||||||||||||||| |
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| T |
11825632 |
taagcgtagaatccaaatatcc |
11825653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 144; E-Value: 3e-75
Query Start/End: Original strand, 7 - 330
Target Start/End: Original strand, 10353326 - 10353642
Alignment:
| Q |
7 |
atgtgtatcaattttcaatagattcctaaagttatttgatgtcatttaactccttattttcaataagtagtgttcgaaaaagttgtaactacta------ |
100 |
Q |
| |
|
|||||||| |||||||||||||||| | ||||| ||| ||||||| |||||||||||||||||||||||||||| ||||||||| | | ||||| |
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| T |
10353326 |
atgtgtattaattttcaatagattcttgaagttcttttatgtcatgtaactccttattttcaataagtagtgttagaaaaagtttttattactataactt |
10353425 |
T |
|
| Q |
101 |
-atgttgtttctctttttctatacaataggatcatccaagcattgttgaggaaaagtaggactgaataatacttcattgtgctaccttcaatattaatat |
199 |
Q |
| |
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| T |
10353426 |
tatgttgtttctctttttctatacaacaggatcatccaagctttgttgagg-aaagtgggaatgaataatacttcattatgctaccttc------aagat |
10353518 |
T |
|
| Q |
200 |
cgttgatgggttcttgtatttttaaatgttcattgtagtgtatgtgtattgtcatatgtatcatttttcataccttgttttttatgccattacttaggta |
299 |
Q |
| |
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||||||||||||||| |||||||||||||||| |||||| |||||||||||||||||| |||| |||||||| |||| | || ||||||| || |
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| T |
10353519 |
cgttgatgggttcttttatttttaaatgttcaatgtagtatatgtgtattgtcatatgcatcagttttcataacttg-------tagcactacttagata |
10353611 |
T |
|
| Q |
300 |
tgtttgttggtactttggatgcacaatactt |
330 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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| T |
10353612 |
tgtttgttggtactttggatgcacaatactt |
10353642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 903 - 971
Target Start/End: Complemental strand, 10214749 - 10214680
Alignment:
| Q |
903 |
cgtttctagtccgaatcacac-aaacttatattcgaattgaagggaattaagtgtagaatccaaatatcc |
971 |
Q |
| |
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| T |
10214749 |
cgtttctaatccgaatcatacgaaatttatatccgaattgaagggaattaaacgtagaatctaaatatcc |
10214680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 424 - 465
Target Start/End: Complemental strand, 11825140 - 11825099
Alignment:
| Q |
424 |
atatcattcacacgaagatatatatcttcatgtgaatgatat |
465 |
Q |
| |
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| T |
11825140 |
atatcattcacatgaagatatatatcttcgtgtgaatgatat |
11825099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 785 - 875
Target Start/End: Complemental strand, 14175701 - 14175611
Alignment:
| Q |
785 |
agttctggaaccattccgttgacttagactcgcaatttagcttattccgcaaaatacgtgccaaaacccgtaagcatttttccagcagaaa |
875 |
Q |
| |
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||||||||| ||||||| | ||| | |||| || | |||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
14175701 |
agttctggagccattccatcaactaaaactcacagtatagcttattccgcaaaatctacatcaaaacccgtaagcatttttccagcagaaa |
14175611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 924 - 966
Target Start/End: Original strand, 14191445 - 14191487
Alignment:
| Q |
924 |
aaacttatattcgaattgaagggaattaagtgtagaatccaaa |
966 |
Q |
| |
|
|||||||||| |||||||||||||||| |||||| |||||||| |
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|
| T |
14191445 |
aaacttatatccgaattgaagggaattgagtgtacaatccaaa |
14191487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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